BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010414
         (487 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI25589.3| unnamed protein product [Vitis vinifera]              250   1e-64
ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...   250   1e-64
ref|XP_002532501.1| 116 kD U5 small nuclear ribonucleoprotein co...   247   6e-64
ref|XP_003609507.1| 116 kDa U5 small nuclear ribonucleoprotein c...   246   1e-63
ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [A...   242   2e-62

>emb|CBI25589.3| unnamed protein product [Vitis vinifera]
          Length = 931

 Score =  250 bits (638), Expect = 1e-64
 Identities = 129/166 (77%), Positives = 140/166 (84%), Gaps = 4/166 (2%)
 Frame = +2

Query: 2    CNVNYGEDIYIFMPLLFNTLPVVKMAAEPLNPSELPKMVEGLRKISKS*PLAITKVEESG 181
            CN++Y ED+YIF PLLFNTLPVVK A EPLNPSELPKMVEGLRKISKS PLAITKVEESG
Sbjct: 524  CNLDYDEDVYIFRPLLFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESG 583

Query: 182  EHTILGTGKLYLDCIMKDLRELYSEVEVKVADSVVSFCETVVESSYIHEMFC*NTQQKEQ 361
            EHTILGTG+LYLD IMKDLRELYSEVEVKVAD VVSFCETVVESS    M C      ++
Sbjct: 584  EHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS---SMKCFAETPNKK 640

Query: 362  NHY----EPFEKGLAQDIENGIVSIDWNRKTIGEFFQTKYDWDLLA 487
            N      EP EKGLA+DIENG+VSIDW+RK +G+FFQTKYDWDLLA
Sbjct: 641  NKITMIAEPLEKGLAEDIENGVVSIDWHRKKLGDFFQTKYDWDLLA 686


>ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
            [Vitis vinifera] gi|147858113|emb|CAN81413.1|
            hypothetical protein VITISV_031170 [Vitis vinifera]
          Length = 988

 Score =  250 bits (638), Expect = 1e-64
 Identities = 129/166 (77%), Positives = 140/166 (84%), Gaps = 4/166 (2%)
 Frame = +2

Query: 2    CNVNYGEDIYIFMPLLFNTLPVVKMAAEPLNPSELPKMVEGLRKISKS*PLAITKVEESG 181
            CN++Y ED+YIF PLLFNTLPVVK A EPLNPSELPKMVEGLRKISKS PLAITKVEESG
Sbjct: 581  CNLDYDEDVYIFRPLLFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESG 640

Query: 182  EHTILGTGKLYLDCIMKDLRELYSEVEVKVADSVVSFCETVVESSYIHEMFC*NTQQKEQ 361
            EHTILGTG+LYLD IMKDLRELYSEVEVKVAD VVSFCETVVESS    M C      ++
Sbjct: 641  EHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS---SMKCFAETPNKK 697

Query: 362  NHY----EPFEKGLAQDIENGIVSIDWNRKTIGEFFQTKYDWDLLA 487
            N      EP EKGLA+DIENG+VSIDW+RK +G+FFQTKYDWDLLA
Sbjct: 698  NKITMIAEPLEKGLAEDIENGVVSIDWHRKKLGDFFQTKYDWDLLA 743


>ref|XP_002532501.1| 116 kD U5 small nuclear ribonucleoprotein component, putative
            [Ricinus communis] gi|223527776|gb|EEF29877.1| 116 kD U5
            small nuclear ribonucleoprotein component, putative
            [Ricinus communis]
          Length = 992

 Score =  247 bits (631), Expect = 6e-64
 Identities = 130/167 (77%), Positives = 139/167 (83%), Gaps = 5/167 (2%)
 Frame = +2

Query: 2    CNVNYG-EDIYIFMPLLFNTLPVVKMAAEPLNPSELPKMVEGLRKISKS*PLAITKVEES 178
            CNVNY  ED+YIF PL FNTLPVVK A EPLNPSELPKMVEGLRKISKS PLAITKVEES
Sbjct: 584  CNVNYSYEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEES 643

Query: 179  GEHTILGTGKLYLDCIMKDLRELYSEVEVKVADSVVSFCETVVESSYIHEMFC*NTQQKE 358
            GEHTILGTG+LYLD IMKDLRELYSEVEVKVAD VVSFCETVVESS    M C      +
Sbjct: 644  GEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS---SMKCFAETPNK 700

Query: 359  QNHY----EPFEKGLAQDIENGIVSIDWNRKTIGEFFQTKYDWDLLA 487
            +N      EP EKGLA+DIENG+VSIDWNRK +G+FF+TKYDWDLLA
Sbjct: 701  KNKITMIAEPLEKGLAEDIENGVVSIDWNRKALGDFFKTKYDWDLLA 747


>ref|XP_003609507.1| 116 kDa U5 small nuclear ribonucleoprotein component [Medicago
            truncatula] gi|355510562|gb|AES91704.1| 116 kDa U5 small
            nuclear ribonucleoprotein component [Medicago truncatula]
          Length = 983

 Score =  246 bits (628), Expect = 1e-63
 Identities = 127/166 (76%), Positives = 138/166 (83%), Gaps = 4/166 (2%)
 Frame = +2

Query: 2    CNVNYGEDIYIFMPLLFNTLPVVKMAAEPLNPSELPKMVEGLRKISKS*PLAITKVEESG 181
            CNV++ ED+YIF PLLFNTL VVK A EPLNPSELPKMVEGLRKISKS PLA+TKVEESG
Sbjct: 581  CNVDFDEDVYIFRPLLFNTLSVVKTATEPLNPSELPKMVEGLRKISKSYPLAVTKVEESG 640

Query: 182  EHTILGTGKLYLDCIMKDLRELYSEVEVKVADSVVSFCETVVESSYIHEMFC*NTQQKEQ 361
            EHTILGTG+LYLD IMKDLRELYSEVEVKVAD VVSFCETVVESS    M C      ++
Sbjct: 641  EHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS---SMKCFAETPNKK 697

Query: 362  NHY----EPFEKGLAQDIENGIVSIDWNRKTIGEFFQTKYDWDLLA 487
            N      EP E+GLA+DIENG+VS DWNRK +GEFFQTKYDWDLLA
Sbjct: 698  NKITMIAEPLERGLAEDIENGVVSTDWNRKKLGEFFQTKYDWDLLA 743


>ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana]
            gi|30679607|ref|NP_849600.1| U5 small nuclear
            ribonucleoprotein component [Arabidopsis thaliana]
            gi|8844127|gb|AAF80219.1|AC025290_8 Contains similarity
            to an U5 snRNP-specific protein 116 kD from Homo sapiens
            gi|4759280 and contains elongation factor G C-terminus
            PF|00679 and is a member of the elongation factor Tu
            family PF|00009 [Arabidopsis thaliana]
            gi|110741512|dbj|BAE98706.1| elongation factor like
            protein [Arabidopsis thaliana]
            gi|332189840|gb|AEE27961.1| U5 small nuclear
            ribonucleoprotein component [Arabidopsis thaliana]
            gi|332189841|gb|AEE27962.1| U5 small nuclear
            ribonucleoprotein component [Arabidopsis thaliana]
          Length = 987

 Score =  242 bits (618), Expect = 2e-62
 Identities = 125/166 (75%), Positives = 137/166 (82%), Gaps = 4/166 (2%)
 Frame = +2

Query: 2    CNVNYGEDIYIFMPLLFNTLPVVKMAAEPLNPSELPKMVEGLRKISKS*PLAITKVEESG 181
            CN +Y ED+YIF  L FNTLPVVK A EPLNPSELPKMVEGLRKISKS PLAITKVEESG
Sbjct: 580  CNASYDEDVYIFRALQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESG 639

Query: 182  EHTILGTGKLYLDCIMKDLRELYSEVEVKVADSVVSFCETVVESSYIHEMFC*NTQQKEQ 361
            EHTILGTG+LYLD IMKDLRELYSEVEVKVAD VVSFCETVVESS    M C      ++
Sbjct: 640  EHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS---SMKCFAETPNKK 696

Query: 362  NHY----EPFEKGLAQDIENGIVSIDWNRKTIGEFFQTKYDWDLLA 487
            N      EP ++GLA+DIENG+VSIDWNRK +G+FF+TKYDWDLLA
Sbjct: 697  NKITMIAEPLDRGLAEDIENGVVSIDWNRKQLGDFFRTKYDWDLLA 742