BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010404
         (809 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002315361.1| predicted protein [Populus trichocarpa] gi|1...   207   2e-51
ref|XP_002270173.1| PREDICTED: transcription elongation factor S...   205   8e-51
ref|XP_002310913.1| predicted protein [Populus trichocarpa] gi|2...   204   2e-50
ref|XP_002513156.1| suppressor of ty, putative [Ricinus communis...   201   1e-49
ref|NP_001150575.1| transcription elongation factor SPT4 [Zea ma...   200   4e-49

>ref|XP_002315361.1| predicted protein [Populus trichocarpa] gi|118489920|gb|ABK96757.1|
           unknown [Populus trichocarpa x Populus deltoides]
           gi|222864401|gb|EEF01532.1| predicted protein [Populus
           trichocarpa]
          Length = 116

 Score =  207 bits (527), Expect = 2e-51
 Identities = 94/114 (82%), Positives = 102/114 (89%)
 Frame = +3

Query: 144 SNVAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFDMDKEHEVVGDCTTSNFTGI 323
           S  AQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFF MD++HE V DCTT NFTGI
Sbjct: 3   SAAAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFTGI 62

Query: 324 ISVMDPTRSWAAKWLRIGRFLPGCYTLAVTEVLPEEYQTLCAENHVPYIPPKRV 485
           ISVMDP+RSWAA+WLRIGRF+PGCYTLAV+E LPE+ Q LC +  VPYIPPKRV
Sbjct: 63  ISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVPYIPPKRV 116


>ref|XP_002270173.1| PREDICTED: transcription elongation factor SPT4 homolog 2 [Vitis
           vinifera] gi|297742714|emb|CBI35348.3| unnamed protein
           product [Vitis vinifera]
          Length = 114

 Score =  205 bits (522), Expect = 8e-51
 Identities = 92/114 (80%), Positives = 101/114 (88%)
 Frame = +3

Query: 141 MSNVAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFDMDKEHEVVGDCTTSNFTG 320
           MSN AQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFF MD++HE V DCTT NF G
Sbjct: 1   MSNAAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNG 60

Query: 321 IISVMDPTRSWAAKWLRIGRFLPGCYTLAVTEVLPEEYQTLCAENHVPYIPPKR 482
           IIS+MDP+RSWAA+WLRIGRF+PGCYTLAV+E LPE+ Q LC E  V Y+PPKR
Sbjct: 61  IISMMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYVPPKR 114


>ref|XP_002310913.1| predicted protein [Populus trichocarpa] gi|222850733|gb|EEE88280.1|
           predicted protein [Populus trichocarpa]
          Length = 116

 Score =  204 bits (519), Expect = 2e-50
 Identities = 93/114 (81%), Positives = 101/114 (88%)
 Frame = +3

Query: 144 SNVAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFDMDKEHEVVGDCTTSNFTGI 323
           S  AQIPTSFGHELRACLRCRLVKTYDQFRESGCENC FF MD++HE V DCTT NFTGI
Sbjct: 3   SAAAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCSFFKMDEDHERVVDCTTPNFTGI 62

Query: 324 ISVMDPTRSWAAKWLRIGRFLPGCYTLAVTEVLPEEYQTLCAENHVPYIPPKRV 485
           ISVMDP+RSWAA+WLRIGRF+PGCYTLAV+E LPE+ Q LC +  VPYIPPKRV
Sbjct: 63  ISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVPYIPPKRV 116


>ref|XP_002513156.1| suppressor of ty, putative [Ricinus communis]
           gi|223548167|gb|EEF49659.1| suppressor of ty, putative
           [Ricinus communis]
          Length = 116

 Score =  201 bits (512), Expect = 1e-49
 Identities = 92/111 (82%), Positives = 98/111 (88%)
 Frame = +3

Query: 153 AQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFDMDKEHEVVGDCTTSNFTGIISV 332
           AQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFF MD++HE V DCTT NF GIISV
Sbjct: 6   AQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISV 65

Query: 333 MDPTRSWAAKWLRIGRFLPGCYTLAVTEVLPEEYQTLCAENHVPYIPPKRV 485
           MDPTRSWAA+WLRIGRF+PGCYTLAV+E LPE+ Q LC E  V Y PPKRV
Sbjct: 66  MDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQALCEEERVQYNPPKRV 116


>ref|NP_001150575.1| transcription elongation factor SPT4 [Zea mays]
           gi|195640310|gb|ACG39623.1| transcription elongation
           factor SPT4 [Zea mays] gi|414590937|tpg|DAA41508.1| TPA:
           transcription elongation factor SPT4 [Zea mays]
          Length = 129

 Score =  200 bits (508), Expect = 4e-49
 Identities = 89/122 (72%), Positives = 106/122 (86%)
 Frame = +3

Query: 120 GRVERENMSNVAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFDMDKEHEVVGDC 299
           G ++ E     A+IPTSFG ELRACLRCRLVKTYDQFRE+GCENCPF +MD+EH+ V +C
Sbjct: 8   GMMDDEERVGHAEIPTSFGPELRACLRCRLVKTYDQFRENGCENCPFLEMDREHDNVVNC 67

Query: 300 TTSNFTGIISVMDPTRSWAAKWLRIGRFLPGCYTLAVTEVLPEEYQTLCAENHVPYIPPK 479
           TT NFTGIIS+MDP+RSWAA+WLRIGRF+PGCYTLAV+E LPEEYQ +C +N+V Y+PPK
Sbjct: 68  TTPNFTGIISLMDPSRSWAARWLRIGRFIPGCYTLAVSEELPEEYQGICQDNNVQYVPPK 127

Query: 480 RV 485
           RV
Sbjct: 128 RV 129