BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010392
         (1986 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo...   726   0.0  
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g...   726   0.0  
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S...   708   0.0  
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...   702   0.0  
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s...   680   0.0  

>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
          Length = 1321

 Score =  726 bits (1875), Expect = 0.0
 Identities = 382/548 (69%), Positives = 441/548 (80%), Gaps = 7/548 (1%)
 Frame = +3

Query: 3    TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSVQYDYTVRNASGGVVQFLYGD 182
            TEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLSV YD TVRNASGG+VQFLYGD
Sbjct: 774  TEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGD 833

Query: 183  DGMDPAKMEGKDGVPLNLERLYMKIRATCPANAHENLSPSEALKKVYERLEKPDISLDG- 359
            DGMDPAKMEGKDG PLNL++L+MK+ ATCP      LSP E L+ + ++L + D S D  
Sbjct: 834  DGMDPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDKLSEHDASSDDG 893

Query: 360  -ANKFKNSLRDFFEGVTDSLKKTRKFLDLDENNVEKNDPSFLEKIAANVSGISLKQLEVF 536
             + KFK  L  F E     LK TR+ L LDE++V +   SF E IAAN+SGIS+KQL+VF
Sbjct: 894  CSEKFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANISGISVKQLQVF 953

Query: 537  LDTCIDRYHLKRIEAGAPIGVIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 716
            LDTC+ RYHLK+IEAGA IG IGAQSIGEPGTQMTLKTFHFAGVASMN+TLGVPRIKEII
Sbjct: 954  LDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII 1013

Query: 717  NGAKNISTPIITAELESKENVTSARIVKGRIEKTVLGEVAKSIKMELTSRQASIVVSLDA 896
            N AK ISTPIITAEL S+++V SARIVKG +EK VLGEVA++IK+ L S Q ++VV LD 
Sbjct: 1014 NAAKKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQPNLVVKLDM 1073

Query: 897  ERIQALHLSISADSVKRSILQNLK-KLKDQHIRTIDGRKIRIFPPETDRNKLHFDLHSLK 1073
            +RI+ALH+ ISADSV+ SIL + K KLK +H+R ID  K+RI+P   D++KL ++LH LK
Sbjct: 1074 QRIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKLLYELHHLK 1133

Query: 1074 AMLPKVIVNGISTAERVVIS----EQKKKYKLLVEGKNLRAVMGTPGVVGCETVSNHITE 1241
            +MLPKVIV GI T ER VIS    E  K+YKLLVEG NL AVMGTPGV   +T SNHI E
Sbjct: 1134 SMLPKVIVKGIPTVERAVISETGEENDKRYKLLVEGTNLLAVMGTPGVDAMKTKSNHIME 1193

Query: 1242 VEETLGIEAARDRIIYEIQETMKGHGMSIDMRHMMLLADLMTYRGEVLGITRFGIQKMKE 1421
            V  TLGIEAAR  II EIQ TMK HGM+ID RHMMLLADLMTY+GE+LGITR+GI KMK 
Sbjct: 1194 VNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKS 1253

Query: 1422 SVLMLASFEKTADHLFNASFNGRHDDIEGVGECIIMGIPMQIGTGILKVRQRVQHVPSLT 1601
            SVLMLASFEKTA+HLFNAS++GR D IEGV ECIIMGIPMQ+GTGILKVRQR+ H+P   
Sbjct: 1254 SVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHLPEFK 1313

Query: 1602 YAMDPILS 1625
            Y  DPIL+
Sbjct: 1314 YQPDPILA 1321


>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
            gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
            Japonica Group] gi|38347455|emb|CAD41360.2|
            OSJNBa0076N16.24 [Oryza sativa Japonica Group]
            gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
            Japonica Group] gi|116310339|emb|CAH67354.1|
            OSIGBa0130B08.14 [Oryza sativa Indica Group]
            gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
            Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|218195112|gb|EEC77539.1| hypothetical protein
            OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score =  726 bits (1875), Expect = 0.0
 Identities = 382/548 (69%), Positives = 441/548 (80%), Gaps = 7/548 (1%)
 Frame = +3

Query: 3    TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSVQYDYTVRNASGGVVQFLYGD 182
            TEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLSV YD TVRNASGG+VQFLYGD
Sbjct: 836  TEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGD 895

Query: 183  DGMDPAKMEGKDGVPLNLERLYMKIRATCPANAHENLSPSEALKKVYERLEKPDISLDG- 359
            DGMDPAKMEGKDG PLNL++L+MK+ ATCP      LSP E L+ + ++L + D S D  
Sbjct: 896  DGMDPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDKLSEHDASSDDG 955

Query: 360  -ANKFKNSLRDFFEGVTDSLKKTRKFLDLDENNVEKNDPSFLEKIAANVSGISLKQLEVF 536
             + KFK  L  F E     LK TR+ L LDE++V +   SF E IAAN+SGIS+KQL+VF
Sbjct: 956  CSEKFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANISGISVKQLQVF 1015

Query: 537  LDTCIDRYHLKRIEAGAPIGVIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 716
            LDTC+ RYHLK+IEAGA IG IGAQSIGEPGTQMTLKTFHFAGVASMN+TLGVPRIKEII
Sbjct: 1016 LDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII 1075

Query: 717  NGAKNISTPIITAELESKENVTSARIVKGRIEKTVLGEVAKSIKMELTSRQASIVVSLDA 896
            N AK ISTPIITAEL S+++V SARIVKG +EK VLGEVA++IK+ L S Q ++VV LD 
Sbjct: 1076 NAAKKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQPNLVVKLDM 1135

Query: 897  ERIQALHLSISADSVKRSILQNLK-KLKDQHIRTIDGRKIRIFPPETDRNKLHFDLHSLK 1073
            +RI+ALH+ ISADSV+ SIL + K KLK +H+R ID  K+RI+P   D++KL ++LH LK
Sbjct: 1136 QRIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKLLYELHHLK 1195

Query: 1074 AMLPKVIVNGISTAERVVIS----EQKKKYKLLVEGKNLRAVMGTPGVVGCETVSNHITE 1241
            +MLPKVIV GI T ER VIS    E  K+YKLLVEG NL AVMGTPGV   +T SNHI E
Sbjct: 1196 SMLPKVIVKGIPTVERAVISETGEENDKRYKLLVEGTNLLAVMGTPGVDAMKTKSNHIME 1255

Query: 1242 VEETLGIEAARDRIIYEIQETMKGHGMSIDMRHMMLLADLMTYRGEVLGITRFGIQKMKE 1421
            V  TLGIEAAR  II EIQ TMK HGM+ID RHMMLLADLMTY+GE+LGITR+GI KMK 
Sbjct: 1256 VNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKS 1315

Query: 1422 SVLMLASFEKTADHLFNASFNGRHDDIEGVGECIIMGIPMQIGTGILKVRQRVQHVPSLT 1601
            SVLMLASFEKTA+HLFNAS++GR D IEGV ECIIMGIPMQ+GTGILKVRQR+ H+P   
Sbjct: 1316 SVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHLPEFK 1375

Query: 1602 YAMDPILS 1625
            Y  DPIL+
Sbjct: 1376 YQPDPILA 1383


>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
            gi|241937900|gb|EES11045.1| hypothetical protein
            SORBIDRAFT_06g021120 [Sorghum bicolor]
          Length = 1391

 Score =  708 bits (1827), Expect = 0.0
 Identities = 373/550 (67%), Positives = 442/550 (80%), Gaps = 9/550 (1%)
 Frame = +3

Query: 3    TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSVQYDYTVRNASGGVVQFLYGD 182
            TEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLSV YD TVRNASGG+VQFLYGD
Sbjct: 843  TEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGD 902

Query: 183  DGMDPAKMEGKDGVPLNLERLYMKIRATCPANAHENLSPSEALKKVYE-RLEKPDISLDG 359
            DGMDPAKMEGKDG+PLNL++L+MK+ ATCP    + LSP EA+K++ E +L + D S DG
Sbjct: 903  DGMDPAKMEGKDGMPLNLDQLFMKVMATCPQRGSDTLSP-EAIKQMLEDKLLQHDTSSDG 961

Query: 360  --ANKFKNSLRDFFEGVTDSLKKTRKFLDLDENNVEKNDPSFLEKIAANVSGISLKQLEV 533
              + +FK +L +F +   + +K TR+ L L E++VEK D    E +AA +SGIS KQL+V
Sbjct: 962  GCSEEFKKNLTEFLDKRIELMKCTRRALHLHEDHVEKKDSCVEESVAAIISGISAKQLQV 1021

Query: 534  FLDTCIDRYHLKRIEAGAPIGVIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEI 713
            FLDTC+ RY  K+IEAGA IG IGAQSIGEPGTQMTLKTFHFAGVASMN+TLGVPRIKEI
Sbjct: 1022 FLDTCLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1081

Query: 714  INGAKNISTPIITAELESKENVTSARIVKGRIEKTVLGEVAKSIKMELTSRQASIVVSLD 893
            IN A+ ISTPIITA+L SK++V SARIVKG +EK VLGEVA +I++ L S Q +++V LD
Sbjct: 1082 INAARKISTPIITAQLLSKKDVLSARIVKGSMEKAVLGEVAVAIQIVLKSSQPNLIVKLD 1141

Query: 894  AERIQALHLSISADSVKRSILQNLK-KLKDQHIRTIDGRKIRIFPPETDRNKLHFDLHSL 1070
             + I++LH+ ISADSV+ SIL + K KLK +H+R ID  K+RI+P  TD+ KL  +LH+L
Sbjct: 1142 MQLIESLHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKRKLQLELHNL 1201

Query: 1071 KAMLPKVIVNGISTAERVVISEQKKK-----YKLLVEGKNLRAVMGTPGVVGCETVSNHI 1235
            K++LPKVIV GI T ERVVI E K K     Y+LLVEG NL AVMGTPGV   +T SNHI
Sbjct: 1202 KSILPKVIVKGIPTVERVVIDEVKVKNETERYQLLVEGTNLLAVMGTPGVDATKTKSNHI 1261

Query: 1236 TEVEETLGIEAARDRIIYEIQETMKGHGMSIDMRHMMLLADLMTYRGEVLGITRFGIQKM 1415
             E  +TLGIEAAR  II EIQ TMK HGM+ID RHMMLLADLMTY+GE+LGITR+GI KM
Sbjct: 1262 METNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMMLLADLMTYKGEILGITRYGIAKM 1321

Query: 1416 KESVLMLASFEKTADHLFNASFNGRHDDIEGVGECIIMGIPMQIGTGILKVRQRVQHVPS 1595
            K SVLMLASFEKT++HLFNAS++GR D IEGV ECIIMGIPMQ+GTGILKVRQR+ HVP 
Sbjct: 1322 KSSVLMLASFEKTSEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHVPE 1381

Query: 1596 LTYAMDPILS 1625
              Y  DPILS
Sbjct: 1382 FKYQPDPILS 1391


>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score =  702 bits (1811), Expect = 0.0
 Identities = 367/544 (67%), Positives = 436/544 (80%), Gaps = 3/544 (0%)
 Frame = +3

Query: 3    TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSVQYDYTVRNASGGVVQFLYGD 182
            TEFFFHTMGGREGLVDTAVKTADTGYMSRRL+KALEDLS+QYD TVRNA+G +VQFLYGD
Sbjct: 842  TEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGD 901

Query: 183  DGMDPAKMEGKDGVPLNLERLYMKIRATCPANAHENLSPSEALKKVYERLEKPDISLDG- 359
            DGMDPA+MEGKDG PLN  RL++K++ATCPA  + +LS  + +++  +RL++ + S +G 
Sbjct: 902  DGMDPARMEGKDGFPLNFNRLFLKVKATCPAGENASLSALQ-IEETVKRLKEHNTSAEGC 960

Query: 360  ANKFKNSLRDFFEGVTDSLKKTRKFLDLDENNVEKNDPSFLEKIAANVSGISLKQLEVFL 539
            ++ FK +L  F E   +  K TR+ L L   +V + +    EK A N+SGI+ KQL+VFL
Sbjct: 961  SDAFKTNLSGFLEECKEKFKNTREALGLHGEHVGEENLDIQEKFAKNISGITSKQLQVFL 1020

Query: 540  DTCIDRYHLKRIEAGAPIGVIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN 719
            DTCI RY LKRIEAG  IG IGA SIGEPGTQMTLKTFHFAGVASMN+TLGVPRIKEIIN
Sbjct: 1021 DTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 1080

Query: 720  GAKNISTPIITAELESKENVTSARIVKGRIEKTVLGEVAKSIKMELTSRQASIVVSLDAE 899
            GAK ISTPIITA LE   NV +AR+VKGRIE+T LG+VAKSIK+ LTSR A I V+LD E
Sbjct: 1081 GAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLALIAVALDME 1140

Query: 900  RIQALHLSISADSVKRSILQNLK-KLKDQHIRTIDGRKIRIFPPETDRNKLHFDLHSLKA 1076
             IQA  LSI ++ V+ SIL+N + KLK QHI+ +D  K+ +  P+ DR+ +HF+LH+LK 
Sbjct: 1141 GIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEVH-PQGDRSTIHFELHALKN 1199

Query: 1077 MLPKVIVNGISTAERVVISEQKK-KYKLLVEGKNLRAVMGTPGVVGCETVSNHITEVEET 1253
            +LP V+V GI T ER VI++  K KY LLVEG  L+ VMGT GV+G ET SNHI EV++T
Sbjct: 1200 LLPTVVVKGIETVERAVINKDNKVKYNLLVEGTGLQTVMGTEGVIGRETTSNHIIEVQQT 1259

Query: 1254 LGIEAARDRIIYEIQETMKGHGMSIDMRHMMLLADLMTYRGEVLGITRFGIQKMKESVLM 1433
            LGIEAAR  II EIQ TM  HGMSID+RHMMLLADLMT+RGEVLGITRFGIQKM +SVLM
Sbjct: 1260 LGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLM 1319

Query: 1434 LASFEKTADHLFNASFNGRHDDIEGVGECIIMGIPMQIGTGILKVRQRVQHVPSLTYAMD 1613
            LASFEKTADHLFNAS +GR D IEGV ECIIMGIPMQ+GTGILKVRQR+Q VP L+Y +D
Sbjct: 1320 LASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQRLQQVPELSYGLD 1379

Query: 1614 PILS 1625
            PI+S
Sbjct: 1380 PIIS 1383


>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Brachypodium distachyon]
          Length = 1392

 Score =  680 bits (1755), Expect = 0.0
 Identities = 357/550 (64%), Positives = 432/550 (78%), Gaps = 9/550 (1%)
 Frame = +3

Query: 3    TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSVQYDYTVRNASGGVVQFLYGD 182
            TEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLSV YD TVRNAS G+VQF+YGD
Sbjct: 843  TEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASSGIVQFVYGD 902

Query: 183  DGMDPAKMEGKDGVPLNLERLYMKIRATCPANAHENLSPSEALKKVYERLEKPDISLDG- 359
            DGMDP KMEGK G PLNL++L+MK++ATCP   H+ LSP   ++ + ++L + D+S  G 
Sbjct: 903  DGMDPVKMEGKGGSPLNLDQLFMKVKATCPQRGHDMLSPEAIMQMLNDKLSEQDMSSGGC 962

Query: 360  ANKFKNSLRDFFEGVTDSLKKTRKFLDLDENNVEKNDPSFLEKIAANVSGISLKQLEVFL 539
            ++KFK  L  FFE     L+ TR+ L LDE++V   D S  E+IAAN+SGIS KQL+VFL
Sbjct: 963  SDKFKELLTKFFEDRIKMLRSTRRTLHLDEDHVGMKDSSIEERIAANISGISAKQLQVFL 1022

Query: 540  DTCIDRYHLKRIEAGAPIGVIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN 719
            DTC+ RYH K IEAGA IG IGAQSIGEPGTQMTLKTFHFAGVASMN+TLGVPRIKEIIN
Sbjct: 1023 DTCLSRYHSKIIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 1082

Query: 720  GAKNISTPIITAELESKENVTSARIVKGRIEKTVLGEVAKSIKMELTSRQASIVVSLDAE 899
             AKNISTPIITAEL S ++++ A  VK  +EK VLGEVA  IK+ L S Q ++VV LD +
Sbjct: 1083 AAKNISTPIITAELLSGQDMSFAVKVKRYVEKVVLGEVAAVIKIVLKSSQPNLVVKLDMQ 1142

Query: 900  RIQAL-HLSISADSVKRSILQNLK-KLKDQHIRTIDGRKIRIFPPETDRNKLHFDLHSLK 1073
            RI+A  ++ IS+DSV++SI+++ K KLK +H+R IDG K+RI+P  TD++KL  +LH+LK
Sbjct: 1143 RIEAQGYMGISSDSVQQSIIRHPKIKLKSEHVRVIDGAKLRIYPTGTDKSKLQLELHTLK 1202

Query: 1074 AMLPKVIVNGISTAERVVISEQKK------KYKLLVEGKNLRAVMGTPGVVGCETVSNHI 1235
            +MLPKVIV GI T ER V++  K+      +Y LLVEG NL  V+GTPGV   +T SNHI
Sbjct: 1203 SMLPKVIVKGIPTVERAVVNPVKRPDKTLDRYNLLVEGTNLLKVLGTPGVDAKKTKSNHI 1262

Query: 1236 TEVEETLGIEAARDRIIYEIQETMKGHGMSIDMRHMMLLADLMTYRGEVLGITRFGIQKM 1415
             EV +TLGIEAAR  II EI+ T + + M ID RHMMLLADLMTY+GEVLGITRFGI KM
Sbjct: 1263 MEVNQTLGIEAARRSIIDEIRYTFESNNMIIDQRHMMLLADLMTYKGEVLGITRFGIVKM 1322

Query: 1416 KESVLMLASFEKTADHLFNASFNGRHDDIEGVGECIIMGIPMQIGTGILKVRQRVQHVPS 1595
            K SVLMLASFEKT +HLFNAS++GR D+IEGV ECIIMGIPM +G+GILKVRQR+ H+P 
Sbjct: 1323 KSSVLMLASFEKTLEHLFNASYSGREDEIEGVSECIIMGIPMTLGSGILKVRQRLDHLPE 1382

Query: 1596 LTYAMDPILS 1625
              Y  D I+S
Sbjct: 1383 FNYQPDAIIS 1392