BLASTX nr result

ID: Coptis24_contig00010357 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010357
         (2288 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285332.1| PREDICTED: probable E3 ubiquitin-protein lig...   726   0.0  
ref|XP_002321983.1| predicted protein [Populus trichocarpa] gi|2...   729   0.0  
emb|CAN77314.1| hypothetical protein VITISV_008041 [Vitis vinifera]   721   0.0  
ref|XP_003551939.1| PREDICTED: probable E3 ubiquitin-protein lig...   718   0.0  
ref|XP_003601869.1| RCC1 domain-containing protein [Medicago tru...   717   0.0  

>ref|XP_002285332.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2 isoform 1
            [Vitis vinifera] gi|296081404|emb|CBI16837.3| unnamed
            protein product [Vitis vinifera]
          Length = 534

 Score =  726 bits (1875), Expect(2) = 0.0
 Identities = 358/457 (78%), Positives = 387/457 (84%)
 Frame = -1

Query: 1622 ATCSFFKQPANFAPDYELSISELAALDMCRKRAVFKPMTTSEQEELKQRCGGSWKLVLRF 1443
            ATCSFF+QPA+FAPD+ELSISELAALDMC KRA+F+PM   E+E LKQRCGGSWKLVLRF
Sbjct: 76   ATCSFFRQPAHFAPDFELSISELAALDMCLKRAIFRPMMLEEREVLKQRCGGSWKLVLRF 135

Query: 1442 LLAGEACCRREKFQAIAGPGHSIVVTSKGKVYSFGSNSSGQLGHGTLEEESRPHPIRSLQ 1263
            LLAGEACCRREK QAIAGPGHSI VT KG VYSFGSNSSGQLGHGT +EE RP  IRSL+
Sbjct: 136  LLAGEACCRREKSQAIAGPGHSIAVTVKGAVYSFGSNSSGQLGHGTTDEEWRPRQIRSLE 195

Query: 1262 GVRIIQAAAGAGRTMLISDAGHVYAFGKDSFGEAEYGAQGTKFVMTPHRLESLKNIFVVQ 1083
            G+RIIQAAAGAGRTMLISDAG VYAFGKDSFGEAEYG QGTK V TP  +ESLKNIFVVQ
Sbjct: 196  GIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTTPQLVESLKNIFVVQ 255

Query: 1082 AAIGNFFTAILSREGRVYTFSWGNDATLGHQTDPSDLEPHPLLGPLENVPIVQIXXXXXX 903
            AAIGNFFTA+LSREGRVYTFSWGNDA LGHQT+ +DLEPHPLLG LEN+P+VQI      
Sbjct: 256  AAIGNFFTAVLSREGRVYTFSWGNDAKLGHQTEANDLEPHPLLGALENIPVVQIAAGYCY 315

Query: 902  XXXXXCQPGGMSVYSVXXXXXXXXXXGSRTDERYPKLIEQFQTLNLQPXXXXXXXXXXXX 723
                 CQP GMSVYSV          G+RTDE++P+LIEQF+ LNLQP            
Sbjct: 316  LLALACQPNGMSVYSVGCGLGGKLGHGTRTDEKHPRLIEQFRILNLQPMVVAAGAWHAAV 375

Query: 722  VGRDGRVCTWGWGRYGCLGHGNEECESIPKVVEALAEIKAVHVATGDYTTFVVSEDGDVY 543
            VGRDGRVCTWGWGRYGCLGHGNEECES+PKVVEAL  +KAVHVATGDYTTFVVS+DGDVY
Sbjct: 376  VGRDGRVCTWGWGRYGCLGHGNEECESVPKVVEALINVKAVHVATGDYTTFVVSDDGDVY 435

Query: 542  SFGCGESSSLGHNAGADGQENRHTNVLTPELVTSLKQVNERFVQISLTNSIYWNAHTFAL 363
            SFGCGESSSLGHN G DGQ NRH N+L+PELVTSLKQ+ ER VQISLTNSIYWNAHTFAL
Sbjct: 436  SFGCGESSSLGHNNGPDGQGNRHANILSPELVTSLKQIKERMVQISLTNSIYWNAHTFAL 495

Query: 362  TESGKLYAFGAGDKGQLGLELAGQQSERGKPELVDID 252
            TE+GKLYAFGAGDKGQLG+EL   Q+ERG PE VDID
Sbjct: 496  TETGKLYAFGAGDKGQLGVELVANQTERGNPERVDID 532



 Score =  115 bits (289), Expect(2) = 0.0
 Identities = 54/76 (71%), Positives = 60/76 (78%)
 Frame = -2

Query: 1915 MDTTVSGTPSIHYHNIVDQXXXXXXXXXSPTFQRQQRHCFGESTPGEFPLAANPSIVLHV 1736
            MD T SGTP++ YHNI DQ          PTFQRQQRHCFG+S+PGEFPLAANPSIVLHV
Sbjct: 1    MDATRSGTPTVQYHNIPDQPIAAIVTSPLPTFQRQQRHCFGDSSPGEFPLAANPSIVLHV 60

Query: 1735 LTGCDLDPQDLATLEA 1688
            LT C+L+PQDLA LEA
Sbjct: 61   LTACNLEPQDLAKLEA 76


>ref|XP_002321983.1| predicted protein [Populus trichocarpa] gi|222868979|gb|EEF06110.1|
            predicted protein [Populus trichocarpa]
          Length = 538

 Score =  729 bits (1881), Expect(2) = 0.0
 Identities = 356/457 (77%), Positives = 389/457 (85%)
 Frame = -1

Query: 1622 ATCSFFKQPANFAPDYELSISELAALDMCRKRAVFKPMTTSEQEELKQRCGGSWKLVLRF 1443
            ATCSFF+QPA+FAPDYELS+SELAALDMC+KRA+FKPMT  E+++LKQRCGGSWKLVLRF
Sbjct: 80   ATCSFFRQPASFAPDYELSMSELAALDMCQKRAIFKPMTPEERQDLKQRCGGSWKLVLRF 139

Query: 1442 LLAGEACCRREKFQAIAGPGHSIVVTSKGKVYSFGSNSSGQLGHGTLEEESRPHPIRSLQ 1263
            LLAGEACCRRE+ QAIAGPGHSI VTS G  YSFGSNSSGQLGHGT EEE RP  IRSLQ
Sbjct: 140  LLAGEACCRRERSQAIAGPGHSIAVTSNGVAYSFGSNSSGQLGHGTTEEEWRPRQIRSLQ 199

Query: 1262 GVRIIQAAAGAGRTMLISDAGHVYAFGKDSFGEAEYGAQGTKFVMTPHRLESLKNIFVVQ 1083
            G+RIIQAAAG GRTMLISDAG VYAFGKDSFGEAEYG QGTK V TP  +ESLKNIFVVQ
Sbjct: 200  GIRIIQAAAGPGRTMLISDAGEVYAFGKDSFGEAEYGVQGTKTVTTPQLVESLKNIFVVQ 259

Query: 1082 AAIGNFFTAILSREGRVYTFSWGNDATLGHQTDPSDLEPHPLLGPLENVPIVQIXXXXXX 903
            AAIGNFFTA+LSREGRVYTFSWGND  LGHQT+P+D+ PHPLLG LEN+P+VQI      
Sbjct: 260  AAIGNFFTAVLSREGRVYTFSWGNDGKLGHQTEPNDVVPHPLLGALENIPVVQIAAGYCY 319

Query: 902  XXXXXCQPGGMSVYSVXXXXXXXXXXGSRTDERYPKLIEQFQTLNLQPXXXXXXXXXXXX 723
                 CQP GMSVYSV          GSRTDE+YP+LIEQFQ LNLQP            
Sbjct: 320  LLALACQPSGMSVYSVGCGLGGKLGHGSRTDEKYPRLIEQFQLLNLQPMVVAAGAWHAAV 379

Query: 722  VGRDGRVCTWGWGRYGCLGHGNEECESIPKVVEALAEIKAVHVATGDYTTFVVSEDGDVY 543
            VGRDGRVCTWGWGRYGCLGHGNEECES+PKVV+AL+++KAVHVATGDYTTFVVS+DGDVY
Sbjct: 380  VGRDGRVCTWGWGRYGCLGHGNEECESVPKVVDALSKVKAVHVATGDYTTFVVSDDGDVY 439

Query: 542  SFGCGESSSLGHNAGADGQENRHTNVLTPELVTSLKQVNERFVQISLTNSIYWNAHTFAL 363
            SFGCGES+SLGHN   DGQ NRHTNVL+PELVTSLK+V ER VQISLTNS+YWNAHTFAL
Sbjct: 440  SFGCGESASLGHNGDGDGQGNRHTNVLSPELVTSLKEVKERVVQISLTNSVYWNAHTFAL 499

Query: 362  TESGKLYAFGAGDKGQLGLELAGQQSERGKPELVDID 252
            TESGKL+AFGAGDKGQLG+EL   Q+ERG PE VD+D
Sbjct: 500  TESGKLFAFGAGDKGQLGMELVNNQTERGNPEQVDVD 536



 Score =  112 bits (280), Expect(2) = 0.0
 Identities = 53/76 (69%), Positives = 58/76 (76%)
 Frame = -2

Query: 1915 MDTTVSGTPSIHYHNIVDQXXXXXXXXXSPTFQRQQRHCFGESTPGEFPLAANPSIVLHV 1736
            MD+T SGTP+I YHNI DQ           T+QR QRHCFG+S PGEFPLAANPSIVLHV
Sbjct: 1    MDSTTSGTPTIQYHNITDQPVTAIVAVPVSTYQRNQRHCFGDSIPGEFPLAANPSIVLHV 60

Query: 1735 LTGCDLDPQDLATLEA 1688
            LT C+LDPQDLA LEA
Sbjct: 61   LTTCNLDPQDLAKLEA 76


>emb|CAN77314.1| hypothetical protein VITISV_008041 [Vitis vinifera]
          Length = 541

 Score =  721 bits (1860), Expect(2) = 0.0
 Identities = 355/452 (78%), Positives = 383/452 (84%)
 Frame = -1

Query: 1622 ATCSFFKQPANFAPDYELSISELAALDMCRKRAVFKPMTTSEQEELKQRCGGSWKLVLRF 1443
            ATCSFF+QPA+FAPD+ELSISELAALDMC KRA+F+PM   E+E LKQRCGGSWKLVLRF
Sbjct: 78   ATCSFFRQPAHFAPDFELSISELAALDMCLKRAIFRPMXLEEREVLKQRCGGSWKLVLRF 137

Query: 1442 LLAGEACCRREKFQAIAGPGHSIVVTSKGKVYSFGSNSSGQLGHGTLEEESRPHPIRSLQ 1263
            LLAGEACCRREK QAIAGPGHSI VT KG VYSFGSNSSGQLGHGT +EE RP  IRSL+
Sbjct: 138  LLAGEACCRREKSQAIAGPGHSIAVTVKGAVYSFGSNSSGQLGHGTTDEEWRPRQIRSLE 197

Query: 1262 GVRIIQAAAGAGRTMLISDAGHVYAFGKDSFGEAEYGAQGTKFVMTPHRLESLKNIFVVQ 1083
            G+RIIQAAAGAGRTMLISDAG VYAFGKDSFGEAEYG QGTK V TP  +ESLKNIFVVQ
Sbjct: 198  GIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTTPQLVESLKNIFVVQ 257

Query: 1082 AAIGNFFTAILSREGRVYTFSWGNDATLGHQTDPSDLEPHPLLGPLENVPIVQIXXXXXX 903
            AAIGNFFTA+LSREGRVYTFSWGNDA LGHQT+ +DLEPHPLLG LEN+P+VQI      
Sbjct: 258  AAIGNFFTAVLSREGRVYTFSWGNDAKLGHQTEANDLEPHPLLGALENIPVVQIAAGYCY 317

Query: 902  XXXXXCQPGGMSVYSVXXXXXXXXXXGSRTDERYPKLIEQFQTLNLQPXXXXXXXXXXXX 723
                 CQP GMSVYSV          G+RTDE++P+LIEQFQ LNLQP            
Sbjct: 318  LLALACQPNGMSVYSVGCGLGGKLGHGTRTDEKHPRLIEQFQILNLQPMVVAAGAWHAAV 377

Query: 722  VGRDGRVCTWGWGRYGCLGHGNEECESIPKVVEALAEIKAVHVATGDYTTFVVSEDGDVY 543
            VGRDGRVCTWGWGRYGCLGHGNEECES+PKVVEAL  +KAVHVATGDYTTFVVS+DGDVY
Sbjct: 378  VGRDGRVCTWGWGRYGCLGHGNEECESVPKVVEALINVKAVHVATGDYTTFVVSDDGDVY 437

Query: 542  SFGCGESSSLGHNAGADGQENRHTNVLTPELVTSLKQVNERFVQISLTNSIYWNAHTFAL 363
            SFGCGESSSLGHN G DGQ NRH N+L+PELVTSLKQ+ ER VQISLTNSIYWNAHTFAL
Sbjct: 438  SFGCGESSSLGHNNGPDGQGNRHANILSPELVTSLKQIKERMVQISLTNSIYWNAHTFAL 497

Query: 362  TESGKLYAFGAGDKGQLGLELAGQQSERGKPE 267
            TE+GKLYAFGAGDKGQLG+EL   Q+ERG PE
Sbjct: 498  TETGKLYAFGAGDKGQLGVELVXNQTERGNPE 529



 Score =  115 bits (289), Expect(2) = 0.0
 Identities = 54/76 (71%), Positives = 60/76 (78%)
 Frame = -2

Query: 1915 MDTTVSGTPSIHYHNIVDQXXXXXXXXXSPTFQRQQRHCFGESTPGEFPLAANPSIVLHV 1736
            MD T SGTP++ YHNI DQ          PTFQRQQRHCFG+S+PGEFPLAANPSIVLHV
Sbjct: 1    MDATRSGTPTVQYHNIPDQPIAAIVTSPLPTFQRQQRHCFGDSSPGEFPLAANPSIVLHV 60

Query: 1735 LTGCDLDPQDLATLEA 1688
            LT C+L+PQDLA LEA
Sbjct: 61   LTACNLEPQDLAKLEA 76


>ref|XP_003551939.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine
            max]
          Length = 535

 Score =  718 bits (1853), Expect(2) = 0.0
 Identities = 353/458 (77%), Positives = 388/458 (84%), Gaps = 1/458 (0%)
 Frame = -1

Query: 1622 ATCSFFKQPANFAPDYELSISELAALDMCRKRAVFKPMTTSEQEELKQRCGGSWKLVLRF 1443
            ATCSFF+QPANFAPD +LS+SELAALDMC+KRA+FKPMTT ++++LK RCGGSWKL LR+
Sbjct: 76   ATCSFFRQPANFAPDLDLSLSELAALDMCQKRAIFKPMTTEQRQDLKLRCGGSWKLALRY 135

Query: 1442 LLAGEACCRREKFQAIAGPGHSIVVTSKGKVYSFGSNSSGQLGHGTLEEESRPHPIRSLQ 1263
            L+AGEACCRREK QAIAGPGHSI VTSKG VYSFGSNSSGQLGHGT +EE RP PIR+LQ
Sbjct: 136  LMAGEACCRREKSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTDEEWRPRPIRTLQ 195

Query: 1262 GVRIIQAAAGAGRTMLISDAGHVYAFGKDSFGEAEYGAQGTKFVMTPHRLESLKNIFVVQ 1083
            G+RIIQAAAGAGRTML+SD+G VYAFGKDSFGEAEYG QG+K V  P  +ESLKNIFVVQ
Sbjct: 196  GIRIIQAAAGAGRTMLVSDSGQVYAFGKDSFGEAEYGVQGSKTVAAPQIVESLKNIFVVQ 255

Query: 1082 AAIGNFFTAILSREGRVYTFSWGNDATLGHQTDPSDLEPHPLLGPLENVPIVQIXXXXXX 903
            AAIGNFFTA+LSREGRVYTFSWG+D  LGH TD SD+EPHPLLG LEN+P+VQI      
Sbjct: 256  AAIGNFFTAVLSREGRVYTFSWGSDGKLGHHTDQSDVEPHPLLGALENIPVVQIAAGYCY 315

Query: 902  XXXXXCQPGGMSVYSVXXXXXXXXXXGSRTDERYPKLIEQFQTLNLQPXXXXXXXXXXXX 723
                 CQP GMSVYSV          GSRTDE+YP+LIEQF  LNLQP            
Sbjct: 316  LLCLACQPSGMSVYSVGCGLGGKLGHGSRTDEKYPRLIEQFGLLNLQPMVVAAGAWHAAV 375

Query: 722  VGRDGRVCTWGWGRYGCLGHGNEECESIPKVVEALAEIKAVHVATGDYTTFVVSEDGDVY 543
            VGRDGRVCTWGWGRYGCLGHGNEECES+PKVVEAL+ +KAVHVATGDYTTFVVS+DGDVY
Sbjct: 376  VGRDGRVCTWGWGRYGCLGHGNEECESVPKVVEALSNVKAVHVATGDYTTFVVSDDGDVY 435

Query: 542  SFGCGESSSLGHN-AGADGQENRHTNVLTPELVTSLKQVNERFVQISLTNSIYWNAHTFA 366
            SFGCGES+SLGHN AG D Q NRH NVL+PELVTSLKQ+NER VQISLTNSIYWNAHTFA
Sbjct: 436  SFGCGESASLGHNAAGNDEQGNRHANVLSPELVTSLKQINERVVQISLTNSIYWNAHTFA 495

Query: 365  LTESGKLYAFGAGDKGQLGLELAGQQSERGKPELVDID 252
            LTESGKLYAFGAGDKGQLG+EL   Q+ERG PE V+ID
Sbjct: 496  LTESGKLYAFGAGDKGQLGIELVANQTERGNPERVEID 533



 Score =  117 bits (293), Expect(2) = 0.0
 Identities = 54/76 (71%), Positives = 60/76 (78%)
 Frame = -2

Query: 1915 MDTTVSGTPSIHYHNIVDQXXXXXXXXXSPTFQRQQRHCFGESTPGEFPLAANPSIVLHV 1736
            MD T SGTP++ YHNI DQ          PTFQRQQRHCFG+STPGEFPL+ANPSIVLHV
Sbjct: 1    MDATTSGTPTVQYHNIPDQPITAIIATPLPTFQRQQRHCFGDSTPGEFPLSANPSIVLHV 60

Query: 1735 LTGCDLDPQDLATLEA 1688
            LT C+L+PQDLA LEA
Sbjct: 61   LTACNLEPQDLAKLEA 76


>ref|XP_003601869.1| RCC1 domain-containing protein [Medicago truncatula]
            gi|355490917|gb|AES72120.1| RCC1 domain-containing
            protein [Medicago truncatula]
          Length = 535

 Score =  717 bits (1850), Expect(2) = 0.0
 Identities = 350/457 (76%), Positives = 386/457 (84%)
 Frame = -1

Query: 1622 ATCSFFKQPANFAPDYELSISELAALDMCRKRAVFKPMTTSEQEELKQRCGGSWKLVLRF 1443
            ATCSFF+QPANFAPD+ LS++ELAA DMC KRA+FKPMTT E+++LKQRCGGSWKLVLR+
Sbjct: 77   ATCSFFRQPANFAPDFALSLAELAAFDMCMKRAIFKPMTTEERQDLKQRCGGSWKLVLRY 136

Query: 1442 LLAGEACCRREKFQAIAGPGHSIVVTSKGKVYSFGSNSSGQLGHGTLEEESRPHPIRSLQ 1263
            LLAGEACCRREK QAIAGPGHSI VTSKG VYSFGSNSSGQLGHGT EEE RP PIR+LQ
Sbjct: 137  LLAGEACCRREKSQAIAGPGHSIAVTSKGDVYSFGSNSSGQLGHGTTEEEWRPKPIRTLQ 196

Query: 1262 GVRIIQAAAGAGRTMLISDAGHVYAFGKDSFGEAEYGAQGTKFVMTPHRLESLKNIFVVQ 1083
            G+RIIQAAAGAGRTMLI+D+G VYAFGKDSFGEAEYG QG+K V+ P  +ESLKNIFVVQ
Sbjct: 197  GIRIIQAAAGAGRTMLITDSGQVYAFGKDSFGEAEYGGQGSKTVIAPRLVESLKNIFVVQ 256

Query: 1082 AAIGNFFTAILSREGRVYTFSWGNDATLGHQTDPSDLEPHPLLGPLENVPIVQIXXXXXX 903
            AAIGNFFTA+LSREGRVYTFSWG+D  LGH TD +D+EPHPLLG LE++P+VQI      
Sbjct: 257  AAIGNFFTAVLSREGRVYTFSWGSDGKLGHHTDSNDMEPHPLLGALEDIPVVQIAAGYCY 316

Query: 902  XXXXXCQPGGMSVYSVXXXXXXXXXXGSRTDERYPKLIEQFQTLNLQPXXXXXXXXXXXX 723
                 CQP GMSVYSV          G+RTDE++P+LIEQFQTLNLQP            
Sbjct: 317  LLCLACQPSGMSVYSVGCGLGGKLGHGTRTDEKFPRLIEQFQTLNLQPMVISAGAWHAAV 376

Query: 722  VGRDGRVCTWGWGRYGCLGHGNEECESIPKVVEALAEIKAVHVATGDYTTFVVSEDGDVY 543
            VGRDGRVCTWGWGRYGCLGHGNEECE+ PKVV+AL  +KAVHVATGDYTTFVV+EDGDVY
Sbjct: 377  VGRDGRVCTWGWGRYGCLGHGNEECEAAPKVVDALTNVKAVHVATGDYTTFVVAEDGDVY 436

Query: 542  SFGCGESSSLGHNAGADGQENRHTNVLTPELVTSLKQVNERFVQISLTNSIYWNAHTFAL 363
            SFGCGES+SLGHNA  D + NRH NVL PELVTSLKQ+NER VQISLTNSIYWNAHTFAL
Sbjct: 437  SFGCGESASLGHNAVIDAEGNRHANVLNPELVTSLKQINERVVQISLTNSIYWNAHTFAL 496

Query: 362  TESGKLYAFGAGDKGQLGLELAGQQSERGKPELVDID 252
            TESGKLYAFGAGDKGQLG+EL   Q+ER  PE VDID
Sbjct: 497  TESGKLYAFGAGDKGQLGIELVANQTERVNPEQVDID 533



 Score =  107 bits (267), Expect(2) = 0.0
 Identities = 53/77 (68%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
 Frame = -2

Query: 1915 MDTTVSGTPSIHYHNIVDQXXXXXXXXXS-PTFQRQQRHCFGESTPGEFPLAANPSIVLH 1739
            MD T SGTP+I YHNI DQ           PTFQRQQR C G STPGEFPL+A+PSIVLH
Sbjct: 1    MDATTSGTPTIQYHNITDQTITAIVVATPLPTFQRQQRQCLGNSTPGEFPLSASPSIVLH 60

Query: 1738 VLTGCDLDPQDLATLEA 1688
            VLT C+LDPQDLA LEA
Sbjct: 61   VLTSCNLDPQDLAKLEA 77


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