BLASTX nr result
ID: Coptis24_contig00010357
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00010357
(2288 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285332.1| PREDICTED: probable E3 ubiquitin-protein lig... 726 0.0
ref|XP_002321983.1| predicted protein [Populus trichocarpa] gi|2... 729 0.0
emb|CAN77314.1| hypothetical protein VITISV_008041 [Vitis vinifera] 721 0.0
ref|XP_003551939.1| PREDICTED: probable E3 ubiquitin-protein lig... 718 0.0
ref|XP_003601869.1| RCC1 domain-containing protein [Medicago tru... 717 0.0
>ref|XP_002285332.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2 isoform 1
[Vitis vinifera] gi|296081404|emb|CBI16837.3| unnamed
protein product [Vitis vinifera]
Length = 534
Score = 726 bits (1875), Expect(2) = 0.0
Identities = 358/457 (78%), Positives = 387/457 (84%)
Frame = -1
Query: 1622 ATCSFFKQPANFAPDYELSISELAALDMCRKRAVFKPMTTSEQEELKQRCGGSWKLVLRF 1443
ATCSFF+QPA+FAPD+ELSISELAALDMC KRA+F+PM E+E LKQRCGGSWKLVLRF
Sbjct: 76 ATCSFFRQPAHFAPDFELSISELAALDMCLKRAIFRPMMLEEREVLKQRCGGSWKLVLRF 135
Query: 1442 LLAGEACCRREKFQAIAGPGHSIVVTSKGKVYSFGSNSSGQLGHGTLEEESRPHPIRSLQ 1263
LLAGEACCRREK QAIAGPGHSI VT KG VYSFGSNSSGQLGHGT +EE RP IRSL+
Sbjct: 136 LLAGEACCRREKSQAIAGPGHSIAVTVKGAVYSFGSNSSGQLGHGTTDEEWRPRQIRSLE 195
Query: 1262 GVRIIQAAAGAGRTMLISDAGHVYAFGKDSFGEAEYGAQGTKFVMTPHRLESLKNIFVVQ 1083
G+RIIQAAAGAGRTMLISDAG VYAFGKDSFGEAEYG QGTK V TP +ESLKNIFVVQ
Sbjct: 196 GIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTTPQLVESLKNIFVVQ 255
Query: 1082 AAIGNFFTAILSREGRVYTFSWGNDATLGHQTDPSDLEPHPLLGPLENVPIVQIXXXXXX 903
AAIGNFFTA+LSREGRVYTFSWGNDA LGHQT+ +DLEPHPLLG LEN+P+VQI
Sbjct: 256 AAIGNFFTAVLSREGRVYTFSWGNDAKLGHQTEANDLEPHPLLGALENIPVVQIAAGYCY 315
Query: 902 XXXXXCQPGGMSVYSVXXXXXXXXXXGSRTDERYPKLIEQFQTLNLQPXXXXXXXXXXXX 723
CQP GMSVYSV G+RTDE++P+LIEQF+ LNLQP
Sbjct: 316 LLALACQPNGMSVYSVGCGLGGKLGHGTRTDEKHPRLIEQFRILNLQPMVVAAGAWHAAV 375
Query: 722 VGRDGRVCTWGWGRYGCLGHGNEECESIPKVVEALAEIKAVHVATGDYTTFVVSEDGDVY 543
VGRDGRVCTWGWGRYGCLGHGNEECES+PKVVEAL +KAVHVATGDYTTFVVS+DGDVY
Sbjct: 376 VGRDGRVCTWGWGRYGCLGHGNEECESVPKVVEALINVKAVHVATGDYTTFVVSDDGDVY 435
Query: 542 SFGCGESSSLGHNAGADGQENRHTNVLTPELVTSLKQVNERFVQISLTNSIYWNAHTFAL 363
SFGCGESSSLGHN G DGQ NRH N+L+PELVTSLKQ+ ER VQISLTNSIYWNAHTFAL
Sbjct: 436 SFGCGESSSLGHNNGPDGQGNRHANILSPELVTSLKQIKERMVQISLTNSIYWNAHTFAL 495
Query: 362 TESGKLYAFGAGDKGQLGLELAGQQSERGKPELVDID 252
TE+GKLYAFGAGDKGQLG+EL Q+ERG PE VDID
Sbjct: 496 TETGKLYAFGAGDKGQLGVELVANQTERGNPERVDID 532
Score = 115 bits (289), Expect(2) = 0.0
Identities = 54/76 (71%), Positives = 60/76 (78%)
Frame = -2
Query: 1915 MDTTVSGTPSIHYHNIVDQXXXXXXXXXSPTFQRQQRHCFGESTPGEFPLAANPSIVLHV 1736
MD T SGTP++ YHNI DQ PTFQRQQRHCFG+S+PGEFPLAANPSIVLHV
Sbjct: 1 MDATRSGTPTVQYHNIPDQPIAAIVTSPLPTFQRQQRHCFGDSSPGEFPLAANPSIVLHV 60
Query: 1735 LTGCDLDPQDLATLEA 1688
LT C+L+PQDLA LEA
Sbjct: 61 LTACNLEPQDLAKLEA 76
>ref|XP_002321983.1| predicted protein [Populus trichocarpa] gi|222868979|gb|EEF06110.1|
predicted protein [Populus trichocarpa]
Length = 538
Score = 729 bits (1881), Expect(2) = 0.0
Identities = 356/457 (77%), Positives = 389/457 (85%)
Frame = -1
Query: 1622 ATCSFFKQPANFAPDYELSISELAALDMCRKRAVFKPMTTSEQEELKQRCGGSWKLVLRF 1443
ATCSFF+QPA+FAPDYELS+SELAALDMC+KRA+FKPMT E+++LKQRCGGSWKLVLRF
Sbjct: 80 ATCSFFRQPASFAPDYELSMSELAALDMCQKRAIFKPMTPEERQDLKQRCGGSWKLVLRF 139
Query: 1442 LLAGEACCRREKFQAIAGPGHSIVVTSKGKVYSFGSNSSGQLGHGTLEEESRPHPIRSLQ 1263
LLAGEACCRRE+ QAIAGPGHSI VTS G YSFGSNSSGQLGHGT EEE RP IRSLQ
Sbjct: 140 LLAGEACCRRERSQAIAGPGHSIAVTSNGVAYSFGSNSSGQLGHGTTEEEWRPRQIRSLQ 199
Query: 1262 GVRIIQAAAGAGRTMLISDAGHVYAFGKDSFGEAEYGAQGTKFVMTPHRLESLKNIFVVQ 1083
G+RIIQAAAG GRTMLISDAG VYAFGKDSFGEAEYG QGTK V TP +ESLKNIFVVQ
Sbjct: 200 GIRIIQAAAGPGRTMLISDAGEVYAFGKDSFGEAEYGVQGTKTVTTPQLVESLKNIFVVQ 259
Query: 1082 AAIGNFFTAILSREGRVYTFSWGNDATLGHQTDPSDLEPHPLLGPLENVPIVQIXXXXXX 903
AAIGNFFTA+LSREGRVYTFSWGND LGHQT+P+D+ PHPLLG LEN+P+VQI
Sbjct: 260 AAIGNFFTAVLSREGRVYTFSWGNDGKLGHQTEPNDVVPHPLLGALENIPVVQIAAGYCY 319
Query: 902 XXXXXCQPGGMSVYSVXXXXXXXXXXGSRTDERYPKLIEQFQTLNLQPXXXXXXXXXXXX 723
CQP GMSVYSV GSRTDE+YP+LIEQFQ LNLQP
Sbjct: 320 LLALACQPSGMSVYSVGCGLGGKLGHGSRTDEKYPRLIEQFQLLNLQPMVVAAGAWHAAV 379
Query: 722 VGRDGRVCTWGWGRYGCLGHGNEECESIPKVVEALAEIKAVHVATGDYTTFVVSEDGDVY 543
VGRDGRVCTWGWGRYGCLGHGNEECES+PKVV+AL+++KAVHVATGDYTTFVVS+DGDVY
Sbjct: 380 VGRDGRVCTWGWGRYGCLGHGNEECESVPKVVDALSKVKAVHVATGDYTTFVVSDDGDVY 439
Query: 542 SFGCGESSSLGHNAGADGQENRHTNVLTPELVTSLKQVNERFVQISLTNSIYWNAHTFAL 363
SFGCGES+SLGHN DGQ NRHTNVL+PELVTSLK+V ER VQISLTNS+YWNAHTFAL
Sbjct: 440 SFGCGESASLGHNGDGDGQGNRHTNVLSPELVTSLKEVKERVVQISLTNSVYWNAHTFAL 499
Query: 362 TESGKLYAFGAGDKGQLGLELAGQQSERGKPELVDID 252
TESGKL+AFGAGDKGQLG+EL Q+ERG PE VD+D
Sbjct: 500 TESGKLFAFGAGDKGQLGMELVNNQTERGNPEQVDVD 536
Score = 112 bits (280), Expect(2) = 0.0
Identities = 53/76 (69%), Positives = 58/76 (76%)
Frame = -2
Query: 1915 MDTTVSGTPSIHYHNIVDQXXXXXXXXXSPTFQRQQRHCFGESTPGEFPLAANPSIVLHV 1736
MD+T SGTP+I YHNI DQ T+QR QRHCFG+S PGEFPLAANPSIVLHV
Sbjct: 1 MDSTTSGTPTIQYHNITDQPVTAIVAVPVSTYQRNQRHCFGDSIPGEFPLAANPSIVLHV 60
Query: 1735 LTGCDLDPQDLATLEA 1688
LT C+LDPQDLA LEA
Sbjct: 61 LTTCNLDPQDLAKLEA 76
>emb|CAN77314.1| hypothetical protein VITISV_008041 [Vitis vinifera]
Length = 541
Score = 721 bits (1860), Expect(2) = 0.0
Identities = 355/452 (78%), Positives = 383/452 (84%)
Frame = -1
Query: 1622 ATCSFFKQPANFAPDYELSISELAALDMCRKRAVFKPMTTSEQEELKQRCGGSWKLVLRF 1443
ATCSFF+QPA+FAPD+ELSISELAALDMC KRA+F+PM E+E LKQRCGGSWKLVLRF
Sbjct: 78 ATCSFFRQPAHFAPDFELSISELAALDMCLKRAIFRPMXLEEREVLKQRCGGSWKLVLRF 137
Query: 1442 LLAGEACCRREKFQAIAGPGHSIVVTSKGKVYSFGSNSSGQLGHGTLEEESRPHPIRSLQ 1263
LLAGEACCRREK QAIAGPGHSI VT KG VYSFGSNSSGQLGHGT +EE RP IRSL+
Sbjct: 138 LLAGEACCRREKSQAIAGPGHSIAVTVKGAVYSFGSNSSGQLGHGTTDEEWRPRQIRSLE 197
Query: 1262 GVRIIQAAAGAGRTMLISDAGHVYAFGKDSFGEAEYGAQGTKFVMTPHRLESLKNIFVVQ 1083
G+RIIQAAAGAGRTMLISDAG VYAFGKDSFGEAEYG QGTK V TP +ESLKNIFVVQ
Sbjct: 198 GIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTTPQLVESLKNIFVVQ 257
Query: 1082 AAIGNFFTAILSREGRVYTFSWGNDATLGHQTDPSDLEPHPLLGPLENVPIVQIXXXXXX 903
AAIGNFFTA+LSREGRVYTFSWGNDA LGHQT+ +DLEPHPLLG LEN+P+VQI
Sbjct: 258 AAIGNFFTAVLSREGRVYTFSWGNDAKLGHQTEANDLEPHPLLGALENIPVVQIAAGYCY 317
Query: 902 XXXXXCQPGGMSVYSVXXXXXXXXXXGSRTDERYPKLIEQFQTLNLQPXXXXXXXXXXXX 723
CQP GMSVYSV G+RTDE++P+LIEQFQ LNLQP
Sbjct: 318 LLALACQPNGMSVYSVGCGLGGKLGHGTRTDEKHPRLIEQFQILNLQPMVVAAGAWHAAV 377
Query: 722 VGRDGRVCTWGWGRYGCLGHGNEECESIPKVVEALAEIKAVHVATGDYTTFVVSEDGDVY 543
VGRDGRVCTWGWGRYGCLGHGNEECES+PKVVEAL +KAVHVATGDYTTFVVS+DGDVY
Sbjct: 378 VGRDGRVCTWGWGRYGCLGHGNEECESVPKVVEALINVKAVHVATGDYTTFVVSDDGDVY 437
Query: 542 SFGCGESSSLGHNAGADGQENRHTNVLTPELVTSLKQVNERFVQISLTNSIYWNAHTFAL 363
SFGCGESSSLGHN G DGQ NRH N+L+PELVTSLKQ+ ER VQISLTNSIYWNAHTFAL
Sbjct: 438 SFGCGESSSLGHNNGPDGQGNRHANILSPELVTSLKQIKERMVQISLTNSIYWNAHTFAL 497
Query: 362 TESGKLYAFGAGDKGQLGLELAGQQSERGKPE 267
TE+GKLYAFGAGDKGQLG+EL Q+ERG PE
Sbjct: 498 TETGKLYAFGAGDKGQLGVELVXNQTERGNPE 529
Score = 115 bits (289), Expect(2) = 0.0
Identities = 54/76 (71%), Positives = 60/76 (78%)
Frame = -2
Query: 1915 MDTTVSGTPSIHYHNIVDQXXXXXXXXXSPTFQRQQRHCFGESTPGEFPLAANPSIVLHV 1736
MD T SGTP++ YHNI DQ PTFQRQQRHCFG+S+PGEFPLAANPSIVLHV
Sbjct: 1 MDATRSGTPTVQYHNIPDQPIAAIVTSPLPTFQRQQRHCFGDSSPGEFPLAANPSIVLHV 60
Query: 1735 LTGCDLDPQDLATLEA 1688
LT C+L+PQDLA LEA
Sbjct: 61 LTACNLEPQDLAKLEA 76
>ref|XP_003551939.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine
max]
Length = 535
Score = 718 bits (1853), Expect(2) = 0.0
Identities = 353/458 (77%), Positives = 388/458 (84%), Gaps = 1/458 (0%)
Frame = -1
Query: 1622 ATCSFFKQPANFAPDYELSISELAALDMCRKRAVFKPMTTSEQEELKQRCGGSWKLVLRF 1443
ATCSFF+QPANFAPD +LS+SELAALDMC+KRA+FKPMTT ++++LK RCGGSWKL LR+
Sbjct: 76 ATCSFFRQPANFAPDLDLSLSELAALDMCQKRAIFKPMTTEQRQDLKLRCGGSWKLALRY 135
Query: 1442 LLAGEACCRREKFQAIAGPGHSIVVTSKGKVYSFGSNSSGQLGHGTLEEESRPHPIRSLQ 1263
L+AGEACCRREK QAIAGPGHSI VTSKG VYSFGSNSSGQLGHGT +EE RP PIR+LQ
Sbjct: 136 LMAGEACCRREKSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTDEEWRPRPIRTLQ 195
Query: 1262 GVRIIQAAAGAGRTMLISDAGHVYAFGKDSFGEAEYGAQGTKFVMTPHRLESLKNIFVVQ 1083
G+RIIQAAAGAGRTML+SD+G VYAFGKDSFGEAEYG QG+K V P +ESLKNIFVVQ
Sbjct: 196 GIRIIQAAAGAGRTMLVSDSGQVYAFGKDSFGEAEYGVQGSKTVAAPQIVESLKNIFVVQ 255
Query: 1082 AAIGNFFTAILSREGRVYTFSWGNDATLGHQTDPSDLEPHPLLGPLENVPIVQIXXXXXX 903
AAIGNFFTA+LSREGRVYTFSWG+D LGH TD SD+EPHPLLG LEN+P+VQI
Sbjct: 256 AAIGNFFTAVLSREGRVYTFSWGSDGKLGHHTDQSDVEPHPLLGALENIPVVQIAAGYCY 315
Query: 902 XXXXXCQPGGMSVYSVXXXXXXXXXXGSRTDERYPKLIEQFQTLNLQPXXXXXXXXXXXX 723
CQP GMSVYSV GSRTDE+YP+LIEQF LNLQP
Sbjct: 316 LLCLACQPSGMSVYSVGCGLGGKLGHGSRTDEKYPRLIEQFGLLNLQPMVVAAGAWHAAV 375
Query: 722 VGRDGRVCTWGWGRYGCLGHGNEECESIPKVVEALAEIKAVHVATGDYTTFVVSEDGDVY 543
VGRDGRVCTWGWGRYGCLGHGNEECES+PKVVEAL+ +KAVHVATGDYTTFVVS+DGDVY
Sbjct: 376 VGRDGRVCTWGWGRYGCLGHGNEECESVPKVVEALSNVKAVHVATGDYTTFVVSDDGDVY 435
Query: 542 SFGCGESSSLGHN-AGADGQENRHTNVLTPELVTSLKQVNERFVQISLTNSIYWNAHTFA 366
SFGCGES+SLGHN AG D Q NRH NVL+PELVTSLKQ+NER VQISLTNSIYWNAHTFA
Sbjct: 436 SFGCGESASLGHNAAGNDEQGNRHANVLSPELVTSLKQINERVVQISLTNSIYWNAHTFA 495
Query: 365 LTESGKLYAFGAGDKGQLGLELAGQQSERGKPELVDID 252
LTESGKLYAFGAGDKGQLG+EL Q+ERG PE V+ID
Sbjct: 496 LTESGKLYAFGAGDKGQLGIELVANQTERGNPERVEID 533
Score = 117 bits (293), Expect(2) = 0.0
Identities = 54/76 (71%), Positives = 60/76 (78%)
Frame = -2
Query: 1915 MDTTVSGTPSIHYHNIVDQXXXXXXXXXSPTFQRQQRHCFGESTPGEFPLAANPSIVLHV 1736
MD T SGTP++ YHNI DQ PTFQRQQRHCFG+STPGEFPL+ANPSIVLHV
Sbjct: 1 MDATTSGTPTVQYHNIPDQPITAIIATPLPTFQRQQRHCFGDSTPGEFPLSANPSIVLHV 60
Query: 1735 LTGCDLDPQDLATLEA 1688
LT C+L+PQDLA LEA
Sbjct: 61 LTACNLEPQDLAKLEA 76
>ref|XP_003601869.1| RCC1 domain-containing protein [Medicago truncatula]
gi|355490917|gb|AES72120.1| RCC1 domain-containing
protein [Medicago truncatula]
Length = 535
Score = 717 bits (1850), Expect(2) = 0.0
Identities = 350/457 (76%), Positives = 386/457 (84%)
Frame = -1
Query: 1622 ATCSFFKQPANFAPDYELSISELAALDMCRKRAVFKPMTTSEQEELKQRCGGSWKLVLRF 1443
ATCSFF+QPANFAPD+ LS++ELAA DMC KRA+FKPMTT E+++LKQRCGGSWKLVLR+
Sbjct: 77 ATCSFFRQPANFAPDFALSLAELAAFDMCMKRAIFKPMTTEERQDLKQRCGGSWKLVLRY 136
Query: 1442 LLAGEACCRREKFQAIAGPGHSIVVTSKGKVYSFGSNSSGQLGHGTLEEESRPHPIRSLQ 1263
LLAGEACCRREK QAIAGPGHSI VTSKG VYSFGSNSSGQLGHGT EEE RP PIR+LQ
Sbjct: 137 LLAGEACCRREKSQAIAGPGHSIAVTSKGDVYSFGSNSSGQLGHGTTEEEWRPKPIRTLQ 196
Query: 1262 GVRIIQAAAGAGRTMLISDAGHVYAFGKDSFGEAEYGAQGTKFVMTPHRLESLKNIFVVQ 1083
G+RIIQAAAGAGRTMLI+D+G VYAFGKDSFGEAEYG QG+K V+ P +ESLKNIFVVQ
Sbjct: 197 GIRIIQAAAGAGRTMLITDSGQVYAFGKDSFGEAEYGGQGSKTVIAPRLVESLKNIFVVQ 256
Query: 1082 AAIGNFFTAILSREGRVYTFSWGNDATLGHQTDPSDLEPHPLLGPLENVPIVQIXXXXXX 903
AAIGNFFTA+LSREGRVYTFSWG+D LGH TD +D+EPHPLLG LE++P+VQI
Sbjct: 257 AAIGNFFTAVLSREGRVYTFSWGSDGKLGHHTDSNDMEPHPLLGALEDIPVVQIAAGYCY 316
Query: 902 XXXXXCQPGGMSVYSVXXXXXXXXXXGSRTDERYPKLIEQFQTLNLQPXXXXXXXXXXXX 723
CQP GMSVYSV G+RTDE++P+LIEQFQTLNLQP
Sbjct: 317 LLCLACQPSGMSVYSVGCGLGGKLGHGTRTDEKFPRLIEQFQTLNLQPMVISAGAWHAAV 376
Query: 722 VGRDGRVCTWGWGRYGCLGHGNEECESIPKVVEALAEIKAVHVATGDYTTFVVSEDGDVY 543
VGRDGRVCTWGWGRYGCLGHGNEECE+ PKVV+AL +KAVHVATGDYTTFVV+EDGDVY
Sbjct: 377 VGRDGRVCTWGWGRYGCLGHGNEECEAAPKVVDALTNVKAVHVATGDYTTFVVAEDGDVY 436
Query: 542 SFGCGESSSLGHNAGADGQENRHTNVLTPELVTSLKQVNERFVQISLTNSIYWNAHTFAL 363
SFGCGES+SLGHNA D + NRH NVL PELVTSLKQ+NER VQISLTNSIYWNAHTFAL
Sbjct: 437 SFGCGESASLGHNAVIDAEGNRHANVLNPELVTSLKQINERVVQISLTNSIYWNAHTFAL 496
Query: 362 TESGKLYAFGAGDKGQLGLELAGQQSERGKPELVDID 252
TESGKLYAFGAGDKGQLG+EL Q+ER PE VDID
Sbjct: 497 TESGKLYAFGAGDKGQLGIELVANQTERVNPEQVDID 533
Score = 107 bits (267), Expect(2) = 0.0
Identities = 53/77 (68%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Frame = -2
Query: 1915 MDTTVSGTPSIHYHNIVDQXXXXXXXXXS-PTFQRQQRHCFGESTPGEFPLAANPSIVLH 1739
MD T SGTP+I YHNI DQ PTFQRQQR C G STPGEFPL+A+PSIVLH
Sbjct: 1 MDATTSGTPTIQYHNITDQTITAIVVATPLPTFQRQQRQCLGNSTPGEFPLSASPSIVLH 60
Query: 1738 VLTGCDLDPQDLATLEA 1688
VLT C+LDPQDLA LEA
Sbjct: 61 VLTSCNLDPQDLAKLEA 77