BLASTX nr result
ID: Coptis24_contig00010152
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00010152
(1263 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras... 709 0.0
emb|CBI36559.3| unnamed protein product [Vitis vinifera] 708 0.0
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch... 708 0.0
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras... 703 0.0
ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|2... 701 0.0
>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
subunit RNA polymerase 3; Flags: Precursor
gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
Full=DNA-directed RNA polymerase 3A, chloroplastic;
AltName: Full=NictaRpoT3-syl; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 3A;
Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
RNA polymerase [Nicotiana sylvestris]
gi|21425679|emb|CAC95027.2| plastid RNA polymerase
[Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris]
Length = 977
Score = 709 bits (1831), Expect = 0.0
Identities = 340/401 (84%), Positives = 372/401 (92%)
Frame = -3
Query: 1261 FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFGEGRPLGEAGLRWLKIHLANLYAGGV 1082
FYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEF EGRPLG++GLRWLKIHLA+LYAGG+
Sbjct: 549 FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGI 608
Query: 1081 EKLSYDRRLAFTENHLTDIVDSADKPIDGKRWWLNAEDPFQCLAACINLSEALKSSSPHN 902
EKL YD RLAF ENH+ DI+DSA+ P++G RWWLNAEDPFQCLAACINLSEALKSSSPH
Sbjct: 609 EKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHT 668
Query: 901 VISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGDKPADVYSEIASRVLSIMTRDCK 722
V SHLPIHQDGSCNGLQHYAALGRD++EAAAVNLVAGDKPADVY+EIA RV I+ D
Sbjct: 669 VFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSI 728
Query: 721 KDPATDPAAALAKVLINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEERGEITDDRLL 542
KDPATDP A LAK+LI+QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE+G I DDRLL
Sbjct: 729 KDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLL 788
Query: 541 FSASCYAAKVTLTALGEMFQAARSIMGWLGDCAKIIASENQPVRWITPLGLPVVQPYRKS 362
F+ASCYAAKVTL ALGE+FQAAR M WLGDCAK+IASENQPVRW TPLGLPVVQPY K+
Sbjct: 789 FTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKT 848
Query: 361 ERHLIRTSLQVLALQREGDSVELKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGV 182
+RH+IRTSLQVLALQREGD+VE+++QRTAFPPNFVHSLDGSHMMMTAVACRDAGL FAGV
Sbjct: 849 QRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGV 908
Query: 181 HDSFWTHACDVDKMNRILREKFIELYDIPILDDLLKSFQTS 59
HDSFWTHACDVD+MNRILREKF+ELY +PIL+DLL+SFQ S
Sbjct: 909 HDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQNS 949
>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
Length = 808
Score = 708 bits (1827), Expect = 0.0
Identities = 343/415 (82%), Positives = 375/415 (90%)
Frame = -3
Query: 1261 FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFGEGRPLGEAGLRWLKIHLANLYAGGV 1082
FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF EGRPLG++GLRWLKI LANLYAGGV
Sbjct: 380 FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGV 439
Query: 1081 EKLSYDRRLAFTENHLTDIVDSADKPIDGKRWWLNAEDPFQCLAACINLSEALKSSSPHN 902
EKLSYD RLAF +NHL D+ DSAD P++G RWWL AEDPFQCLAACINLSEAL+SSSPH
Sbjct: 440 EKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHT 499
Query: 901 VISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGDKPADVYSEIASRVLSIMTRDCK 722
VISHLPIHQDGSCNGLQHYAALGR++LEA+AVNLVAG+KPADVYSEIA+RV IM RD
Sbjct: 500 VISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPADVYSEIAARVHEIMKRDSN 559
Query: 721 KDPATDPAAALAKVLINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEERGEITDDRLL 542
KDPATDP A LAKVLI QVDRKLVKQTVMTSVYGVTY+GAREQIKRRL E+G ITD+RLL
Sbjct: 560 KDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLAEKGLITDERLL 619
Query: 541 FSASCYAAKVTLTALGEMFQAARSIMGWLGDCAKIIASENQPVRWITPLGLPVVQPYRKS 362
F+A+CYAAKVTL ALGE+FQAAR IM WLG+CAK+IASENQPV+W TPLGLPV+QPY KS
Sbjct: 620 FTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQPVQWTTPLGLPVIQPYCKS 679
Query: 361 ERHLIRTSLQVLALQREGDSVELKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGV 182
ERHLIRTSLQVLALQREG V +++QRTAFPPNFVHSLDGSHMMMTAVACRDAGL FAGV
Sbjct: 680 ERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGV 739
Query: 181 HDSFWTHACDVDKMNRILREKFIELYDIPILDDLLKSFQTSXXXXXXXXXPDRAD 17
HDSFWTHACDVDKMN+ILREKF+ELY +PIL++LL+SFQTS PDR +
Sbjct: 740 HDSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTSHPTLTFPPLPDRGN 794
>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
vinifera]
Length = 979
Score = 708 bits (1827), Expect = 0.0
Identities = 343/415 (82%), Positives = 375/415 (90%)
Frame = -3
Query: 1261 FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFGEGRPLGEAGLRWLKIHLANLYAGGV 1082
FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF EGRPLG++GLRWLKI LANLYAGGV
Sbjct: 551 FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGV 610
Query: 1081 EKLSYDRRLAFTENHLTDIVDSADKPIDGKRWWLNAEDPFQCLAACINLSEALKSSSPHN 902
EKLSYD RLAF +NHL D+ DSAD P++G RWWL AEDPFQCLAACINLSEAL+SSSPH
Sbjct: 611 EKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHT 670
Query: 901 VISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGDKPADVYSEIASRVLSIMTRDCK 722
VISHLPIHQDGSCNGLQHYAALGR++LEA+AVNLVAG+KPADVYSEIA+RV IM RD
Sbjct: 671 VISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPADVYSEIAARVHEIMKRDSN 730
Query: 721 KDPATDPAAALAKVLINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEERGEITDDRLL 542
KDPATDP A LAKVLI QVDRKLVKQTVMTSVYGVTY+GAREQIKRRL E+G ITD+RLL
Sbjct: 731 KDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLAEKGLITDERLL 790
Query: 541 FSASCYAAKVTLTALGEMFQAARSIMGWLGDCAKIIASENQPVRWITPLGLPVVQPYRKS 362
F+A+CYAAKVTL ALGE+FQAAR IM WLG+CAK+IASENQPV+W TPLGLPV+QPY KS
Sbjct: 791 FTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQPVQWTTPLGLPVIQPYCKS 850
Query: 361 ERHLIRTSLQVLALQREGDSVELKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGV 182
ERHLIRTSLQVLALQREG V +++QRTAFPPNFVHSLDGSHMMMTAVACRDAGL FAGV
Sbjct: 851 ERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGV 910
Query: 181 HDSFWTHACDVDKMNRILREKFIELYDIPILDDLLKSFQTSXXXXXXXXXPDRAD 17
HDSFWTHACDVDKMN+ILREKF+ELY +PIL++LL+SFQTS PDR +
Sbjct: 911 HDSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTSHPTLTFPPLPDRGN 965
>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 3B; Flags: Precursor
gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
[Nicotiana tabacum]
Length = 977
Score = 703 bits (1815), Expect = 0.0
Identities = 337/401 (84%), Positives = 371/401 (92%)
Frame = -3
Query: 1261 FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFGEGRPLGEAGLRWLKIHLANLYAGGV 1082
FYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEF EGRPLG++GLRWLKIHLA+LYAGGV
Sbjct: 549 FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGV 608
Query: 1081 EKLSYDRRLAFTENHLTDIVDSADKPIDGKRWWLNAEDPFQCLAACINLSEALKSSSPHN 902
EKL YD RLAF ENH+ DI+DSA+ P++G RWWLNAEDPFQCLAACINLSEALKSSSPH
Sbjct: 609 EKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHT 668
Query: 901 VISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGDKPADVYSEIASRVLSIMTRDCK 722
VISHLPIHQDGSCNGLQHYAALGRD++EAAAVNLVAG+KPADVY+EIA RV I+ D
Sbjct: 669 VISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSI 728
Query: 721 KDPATDPAAALAKVLINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEERGEITDDRLL 542
KDPA DP A LAK+LI+QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE+G I DDRLL
Sbjct: 729 KDPAIDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLL 788
Query: 541 FSASCYAAKVTLTALGEMFQAARSIMGWLGDCAKIIASENQPVRWITPLGLPVVQPYRKS 362
F+ASCYAAKVTL ALGE+FQAAR M WLGDCAK+IA ENQPVRW TPLGLPVVQPY K+
Sbjct: 789 FTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKT 848
Query: 361 ERHLIRTSLQVLALQREGDSVELKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGV 182
+RH+IRTSLQ+LALQREGD+VE+++QRTAFPPNFVHSLDGSHMMMTAVACRDAGL FAGV
Sbjct: 849 QRHVIRTSLQILALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGV 908
Query: 181 HDSFWTHACDVDKMNRILREKFIELYDIPILDDLLKSFQTS 59
HDSFWTHACDVD+MNRILREKF+ELY +PIL+DLL++FQ S
Sbjct: 909 HDSFWTHACDVDQMNRILREKFVELYSLPILEDLLENFQKS 949
>ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|222866553|gb|EEF03684.1|
predicted protein [Populus trichocarpa]
Length = 882
Score = 701 bits (1809), Expect = 0.0
Identities = 337/401 (84%), Positives = 371/401 (92%)
Frame = -3
Query: 1261 FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFGEGRPLGEAGLRWLKIHLANLYAGGV 1082
FYYPHNLDFRGRAYPMHPHL HLSSDLCRGVLEF EGRPLG++GLRWLKIHLANLY+GGV
Sbjct: 454 FYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFEEGRPLGKSGLRWLKIHLANLYSGGV 513
Query: 1081 EKLSYDRRLAFTENHLTDIVDSADKPIDGKRWWLNAEDPFQCLAACINLSEALKSSSPHN 902
EKLS+D RLAF ENHL++I DSA P++GKRWWL AEDPFQCLAACINLSEAL S+SPH
Sbjct: 514 EKLSHDGRLAFVENHLSEIFDSAKNPVNGKRWWLKAEDPFQCLAACINLSEALNSASPHT 573
Query: 901 VISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGDKPADVYSEIASRVLSIMTRDCK 722
VISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVA +KP+DVYSEIA RV I+ RD
Sbjct: 574 VISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAAEKPSDVYSEIAVRVHEIIRRDSN 633
Query: 721 KDPATDPAAALAKVLINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEERGEITDDRLL 542
KDPAT+P A LAK+L++QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE+G ITDDRLL
Sbjct: 634 KDPATNPHALLAKILVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRLL 693
Query: 541 FSASCYAAKVTLTALGEMFQAARSIMGWLGDCAKIIASENQPVRWITPLGLPVVQPYRKS 362
FSA+CY AKVTLTALGE+FQAAR IM WLGDCAKIIASE+QPV+W TPLGLPVVQPY K+
Sbjct: 694 FSAACYTAKVTLTALGELFQAARDIMSWLGDCAKIIASEDQPVQWTTPLGLPVVQPYYKT 753
Query: 361 ERHLIRTSLQVLALQREGDSVELKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGV 182
ERHLI+TSLQ+LALQREG SV++++QRTAFPPNFVHSLDGSHMMMTAVACRDAGL FAGV
Sbjct: 754 ERHLIKTSLQILALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGV 813
Query: 181 HDSFWTHACDVDKMNRILREKFIELYDIPILDDLLKSFQTS 59
HDSFWTHA DVD MNRILREKF+ELY++PIL++LL+ FQTS
Sbjct: 814 HDSFWTHATDVDLMNRILREKFVELYNMPILENLLEDFQTS 854