BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010127
         (408 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-lik...    88   3e-34
ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-lik...    88   3e-34
ref|XP_002331405.1| predicted protein [Populus trichocarpa] gi|2...    87   5e-32
ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus ...    85   5e-31
ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-lik...    85   4e-30

>ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score = 88.2 bits (217), Expect(2) = 3e-34
 Identities = 47/88 (53%), Positives = 57/88 (64%), Gaps = 8/88 (9%)
 Frame = -2

Query: 401 RPWQNVVDFYSNVVNGKVSLSS----SILFQNEDTKTCINEVVEETKRRT----TGRWER 246
           RPWQ V+DFYS+ VNG+ SLSS     I   ++D +T +     E  R      TGRW R
Sbjct: 58  RPWQEVLDFYSHAVNGRFSLSSLLGTEICRDHDDAETPLIYNSAELNRAAVKDKTGRWAR 117

Query: 245 VTFKILLSYHETSFNGWKKQPGLNTVQG 162
            TFKI+LSY   SF+GW+KQPGLNTVQG
Sbjct: 118 ATFKIVLSYDGNSFDGWQKQPGLNTVQG 145



 Score = 82.0 bits (201), Expect(2) = 3e-34
 Identities = 37/48 (77%), Positives = 42/48 (87%)
 Frame = -3

Query: 163 VERFLGRFVDDKKAEKLKDKCLPLEGCTTVEGRTDKGVTALKQACSFW 20
           VER LG+FVD+KKA+ LKDKCLPLEGC  V GRTDKGVTAL+Q CSF+
Sbjct: 147 VERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTALRQVCSFY 194


>ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score = 88.2 bits (217), Expect(2) = 3e-34
 Identities = 47/88 (53%), Positives = 57/88 (64%), Gaps = 8/88 (9%)
 Frame = -2

Query: 401 RPWQNVVDFYSNVVNGKVSLSS----SILFQNEDTKTCINEVVEETKRRT----TGRWER 246
           RPWQ V+DFYS+ VNG+ SLSS     I   ++D +T +     E  R      TGRW R
Sbjct: 58  RPWQEVLDFYSHAVNGRFSLSSLLGTEICRDHDDAETPLIYNSAELNRAAVKDKTGRWAR 117

Query: 245 VTFKILLSYHETSFNGWKKQPGLNTVQG 162
            TFKI+LSY   SF+GW+KQPGLNTVQG
Sbjct: 118 ATFKIVLSYDGNSFDGWQKQPGLNTVQG 145



 Score = 82.0 bits (201), Expect(2) = 3e-34
 Identities = 37/48 (77%), Positives = 42/48 (87%)
 Frame = -3

Query: 163 VERFLGRFVDDKKAEKLKDKCLPLEGCTTVEGRTDKGVTALKQACSFW 20
           VER LG+FVD+KKA+ LKDKCLPLEGC  V GRTDKGVTAL+Q CSF+
Sbjct: 147 VERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTALRQVCSFY 194


>ref|XP_002331405.1| predicted protein [Populus trichocarpa] gi|222873619|gb|EEF10750.1|
           predicted protein [Populus trichocarpa]
          Length = 428

 Score = 86.7 bits (213), Expect(2) = 5e-32
 Identities = 48/99 (48%), Positives = 60/99 (60%), Gaps = 18/99 (18%)
 Frame = -2

Query: 404 SRPWQNVVDFYSNVVNGKVSL----SSSILFQNEDTKTC---INEVVEETKRRT------ 264
           +RPWQ VVDFYS  VNG++SL     + + F  E  K      ++ +EE    T      
Sbjct: 34  ARPWQEVVDFYSKSVNGQLSLLELFGTQVFFTMELKKAHDVHCDDKIEEVSNETGLLEGV 93

Query: 263 -----TGRWERVTFKILLSYHETSFNGWKKQPGLNTVQG 162
                +GRW RVTFKI+LSYH  SF+GW+KQPGLNTVQG
Sbjct: 94  SNVDKSGRWARVTFKIVLSYHGGSFDGWQKQPGLNTVQG 132



 Score = 76.3 bits (186), Expect(2) = 5e-32
 Identities = 33/48 (68%), Positives = 43/48 (89%)
 Frame = -3

Query: 163 VERFLGRFVDDKKAEKLKDKCLPLEGCTTVEGRTDKGVTALKQACSFW 20
           VE+ LGRFVD+KKA++LK++C PLEGC +V GRTDKGV+AL+Q CSF+
Sbjct: 134 VEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSFY 181


>ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis]
           gi|223536579|gb|EEF38224.1| pseudouridylate synthase,
           putative [Ricinus communis]
          Length = 443

 Score = 85.1 bits (209), Expect(2) = 5e-31
 Identities = 47/95 (49%), Positives = 57/95 (60%), Gaps = 14/95 (14%)
 Frame = -2

Query: 404 SRPWQNVVDFYSNVVNGKVSL----SSSILFQNEDTKTCINEVVEETKRRTT-------- 261
           +RPWQ V DFYSNVVNG++S      S + F  +D K      ++E   +T         
Sbjct: 59  ARPWQEVSDFYSNVVNGRLSFLELFRSQMHFVRDDAK------IQEDSNKTELEHFSNED 112

Query: 260 --GRWERVTFKILLSYHETSFNGWKKQPGLNTVQG 162
             GRW RV FKI LSYH  SF+GW+KQPGLNTVQG
Sbjct: 113 RFGRWARVNFKIDLSYHGGSFDGWQKQPGLNTVQG 147



 Score = 74.3 bits (181), Expect(2) = 5e-31
 Identities = 32/48 (66%), Positives = 41/48 (85%)
 Frame = -3

Query: 163 VERFLGRFVDDKKAEKLKDKCLPLEGCTTVEGRTDKGVTALKQACSFW 20
           VE+ LG+FVD+KKA++LK+ C PLEGC  V GRTDKGV+AL+Q CSF+
Sbjct: 149 VEKSLGKFVDEKKAQQLKEACKPLEGCAVVAGRTDKGVSALRQVCSFY 196


>ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-like [Vitis vinifera]
          Length = 433

 Score = 85.1 bits (209), Expect(2) = 4e-30
 Identities = 44/89 (49%), Positives = 55/89 (61%), Gaps = 9/89 (10%)
 Frame = -2

Query: 401 RPWQNVVDFYSNVVNGKVSLSSSILFQNEDTKTCINEVVEETKRRTTG---------RWE 249
           RPWQ V+DFYSNVV G+ SL   +  +         E+VE + +   G         RW 
Sbjct: 49  RPWQQVLDFYSNVVTGRCSLLGLLGIETHPIHD--GEIVEASDKTEFGNVLTKDRGGRWA 106

Query: 248 RVTFKILLSYHETSFNGWKKQPGLNTVQG 162
           R+TFKI+LSYH  SF+GW+KQPGLNTVQG
Sbjct: 107 RLTFKIVLSYHGASFDGWQKQPGLNTVQG 135



 Score = 71.2 bits (173), Expect(2) = 4e-30
 Identities = 33/48 (68%), Positives = 41/48 (85%)
 Frame = -3

Query: 163 VERFLGRFVDDKKAEKLKDKCLPLEGCTTVEGRTDKGVTALKQACSFW 20
           VE  LGRFVD++KA++LK+K LP+EG  TV GRTDKGVTAL+Q CSF+
Sbjct: 137 VEASLGRFVDERKAQQLKEKNLPVEGMVTVAGRTDKGVTALQQVCSFY 184