BLASTX nr result

ID: Coptis24_contig00010116 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010116
         (983 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521713.1| dihydrodipicolinate synthase, putative [Rici...   479   e-133
ref|XP_002279840.1| PREDICTED: dihydrodipicolinate synthase 2, c...   479   e-133
pdb|3TUU|A Chain A, Structure Of Dihydrodipicolinate Synthase Fr...   476   e-132
ref|XP_002301301.1| predicted protein [Populus trichocarpa] gi|2...   471   e-130
ref|XP_002320068.1| predicted protein [Populus trichocarpa] gi|2...   465   e-129

>ref|XP_002521713.1| dihydrodipicolinate synthase, putative [Ricinus communis]
           gi|223539104|gb|EEF40700.1| dihydrodipicolinate
           synthase, putative [Ricinus communis]
          Length = 367

 Score =  479 bits (1234), Expect = e-133
 Identities = 225/273 (82%), Positives = 253/273 (92%)
 Frame = -2

Query: 982 MQIVNGADGVIVGGTTGEGHLMTWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAMHAS 803
           MQIVNGA+GVIVGGTTGEG LM+WDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREA+HA+
Sbjct: 95  MQIVNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHAT 154

Query: 802 EQGFTVGMHAALHINPYYGKTSLDGMVSHFEGVLSMGPTIIYNVPSRTCQDIPPSVIHRI 623
           EQGF VGMHAALHINPYYGKTSL+G+VSHF+ VL MGPTIIYNVPSRT QDIPP VIH I
Sbjct: 155 EQGFAVGMHAALHINPYYGKTSLEGLVSHFDSVLPMGPTIIYNVPSRTGQDIPPCVIHTI 214

Query: 622 AKNANFAGIKECMGNDRIKEYTDKGIAVWSGNDDQCHDARWNFGACGVITVASNLVPGLM 443
           A++ N AG+KEC+GNDR++EYT+KGI VWSGNDDQCHD+RWN GA GVI+V SNLVPGLM
Sbjct: 215 AQSPNLAGVKECVGNDRVEEYTEKGIVVWSGNDDQCHDSRWNHGATGVISVTSNLVPGLM 274

Query: 442 HELMFGGCNTSLNSKLMPLIDWLFREPNPIGLNTALAQLGVVRPVFRLPYVPLPLARRIE 263
            +L+F G N +LNSKL+PLIDWLF+EPNPIGLNTALAQLGVVRPVFRLPYVPLPLA+R+E
Sbjct: 275 RQLVFEGKNPALNSKLLPLIDWLFQEPNPIGLNTALAQLGVVRPVFRLPYVPLPLAQRVE 334

Query: 262 FVNIVKELGRENFVGEKDLQVLYDDDFKLVGRY 164
           FVN+VK +GRENFVGEKD++VL DDDF L+GRY
Sbjct: 335 FVNLVKAIGRENFVGEKDVRVLDDDDFILIGRY 367


>ref|XP_002279840.1| PREDICTED: dihydrodipicolinate synthase 2, chloroplastic [Vitis
           vinifera] gi|296089164|emb|CBI38867.3| unnamed protein
           product [Vitis vinifera]
          Length = 365

 Score =  479 bits (1232), Expect = e-133
 Identities = 223/273 (81%), Positives = 253/273 (92%)
 Frame = -2

Query: 982 MQIVNGADGVIVGGTTGEGHLMTWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAMHAS 803
           MQIV+GA+GVIVGGTTGEG LM+WDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREA+HA+
Sbjct: 93  MQIVDGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHAT 152

Query: 802 EQGFTVGMHAALHINPYYGKTSLDGMVSHFEGVLSMGPTIIYNVPSRTCQDIPPSVIHRI 623
           EQGF VGMHAALHINPYYGKTSL+G+VSHFE VL MGPT+IYNVPSRT QDIPP VIH +
Sbjct: 153 EQGFAVGMHAALHINPYYGKTSLEGLVSHFESVLPMGPTVIYNVPSRTGQDIPPGVIHTV 212

Query: 622 AKNANFAGIKECMGNDRIKEYTDKGIAVWSGNDDQCHDARWNFGACGVITVASNLVPGLM 443
           A++AN AG+KEC+GNDRIK+YTD  I VWSGNDDQCHDA+W++GA GVI+V SNL+PGLM
Sbjct: 213 AQSANLAGVKECVGNDRIKQYTDNRIVVWSGNDDQCHDAKWDYGATGVISVTSNLIPGLM 272

Query: 442 HELMFGGCNTSLNSKLMPLIDWLFREPNPIGLNTALAQLGVVRPVFRLPYVPLPLARRIE 263
            +L+F G N SLN+K+MPL++WLF EPNPIGLNTALAQLGVVRPVFRLPYVPLPLA+R+E
Sbjct: 273 RQLLFKGKNPSLNAKIMPLVNWLFEEPNPIGLNTALAQLGVVRPVFRLPYVPLPLAKRVE 332

Query: 262 FVNIVKELGRENFVGEKDLQVLYDDDFKLVGRY 164
           FVNIVKE+GRENFVGEKD++VL DDDF LVGRY
Sbjct: 333 FVNIVKEIGRENFVGEKDVKVLDDDDFILVGRY 365


>pdb|3TUU|A Chain A, Structure Of Dihydrodipicolinate Synthase From The Common
           Grapevine gi|400261064|pdb|3TUU|B Chain B, Structure Of
           Dihydrodipicolinate Synthase From The Common Grapevine
           gi|400261065|pdb|3TUU|C Chain C, Structure Of
           Dihydrodipicolinate Synthase From The Common Grapevine
           gi|400261066|pdb|3TUU|D Chain D, Structure Of
           Dihydrodipicolinate Synthase From The Common Grapevine
           gi|400261067|pdb|3TUU|E Chain E, Structure Of
           Dihydrodipicolinate Synthase From The Common Grapevine
           gi|400261068|pdb|3TUU|F Chain F, Structure Of
           Dihydrodipicolinate Synthase From The Common Grapevine
           gi|400261069|pdb|3TUU|G Chain G, Structure Of
           Dihydrodipicolinate Synthase From The Common Grapevine
           gi|400261070|pdb|3TUU|H Chain H, Structure Of
           Dihydrodipicolinate Synthase From The Common Grapevine
          Length = 346

 Score =  476 bits (1226), Expect = e-132
 Identities = 222/273 (81%), Positives = 252/273 (92%)
 Frame = -2

Query: 982 MQIVNGADGVIVGGTTGEGHLMTWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAMHAS 803
           MQIV+GA+GVIVGGTTGEG LM+WDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREA+HA+
Sbjct: 74  MQIVDGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHAT 133

Query: 802 EQGFTVGMHAALHINPYYGKTSLDGMVSHFEGVLSMGPTIIYNVPSRTCQDIPPSVIHRI 623
           EQGF VGMHAALHINPYYGKTSL+G+VSHFE VL MGPT+IYNVPSRT QDIPP VIH +
Sbjct: 134 EQGFAVGMHAALHINPYYGKTSLEGLVSHFESVLPMGPTVIYNVPSRTGQDIPPGVIHTV 193

Query: 622 AKNANFAGIKECMGNDRIKEYTDKGIAVWSGNDDQCHDARWNFGACGVITVASNLVPGLM 443
           A++AN AG+ EC+GNDRIK+YTD  I VWSGNDDQCHDA+W++GA GVI+V SNL+PGLM
Sbjct: 194 AQSANLAGVXECVGNDRIKQYTDNRIVVWSGNDDQCHDAKWDYGATGVISVTSNLIPGLM 253

Query: 442 HELMFGGCNTSLNSKLMPLIDWLFREPNPIGLNTALAQLGVVRPVFRLPYVPLPLARRIE 263
            +L+F G N SLN+K+MPL++WLF EPNPIGLNTALAQLGVVRPVFRLPYVPLPLA+R+E
Sbjct: 254 RQLLFKGKNPSLNAKIMPLVNWLFEEPNPIGLNTALAQLGVVRPVFRLPYVPLPLAKRVE 313

Query: 262 FVNIVKELGRENFVGEKDLQVLYDDDFKLVGRY 164
           FVNIVKE+GRENFVGEKD++VL DDDF LVGRY
Sbjct: 314 FVNIVKEIGRENFVGEKDVKVLDDDDFILVGRY 346


>ref|XP_002301301.1| predicted protein [Populus trichocarpa] gi|222843027|gb|EEE80574.1|
           predicted protein [Populus trichocarpa]
          Length = 365

 Score =  471 bits (1212), Expect = e-130
 Identities = 221/273 (80%), Positives = 250/273 (91%)
 Frame = -2

Query: 982 MQIVNGADGVIVGGTTGEGHLMTWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAMHAS 803
           MQIVNGA+GVIVGGTTGEG LM+WDEHIMLIGHTVNCFG S+KVIGNTGSNSTREA+HA+
Sbjct: 93  MQIVNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGSSVKVIGNTGSNSTREAIHAT 152

Query: 802 EQGFTVGMHAALHINPYYGKTSLDGMVSHFEGVLSMGPTIIYNVPSRTCQDIPPSVIHRI 623
           EQGF VGMHAALHINPYYGKTS++GMVSHF+ VL MGPTIIYNVPSRT QDIPP VIH I
Sbjct: 153 EQGFAVGMHAALHINPYYGKTSVEGMVSHFDCVLPMGPTIIYNVPSRTGQDIPPRVIHTI 212

Query: 622 AKNANFAGIKECMGNDRIKEYTDKGIAVWSGNDDQCHDARWNFGACGVITVASNLVPGLM 443
           A++ N AG+KEC+GNDR+++YTDKGI VWSGNDDQCHDARWN GA GVI+V SNL+PGLM
Sbjct: 213 AQSPNLAGVKECVGNDRVEQYTDKGIVVWSGNDDQCHDARWNHGATGVISVTSNLLPGLM 272

Query: 442 HELMFGGCNTSLNSKLMPLIDWLFREPNPIGLNTALAQLGVVRPVFRLPYVPLPLARRIE 263
            +LMF G N+ LNSKL+PLIDWLF+EPNPI LNTALAQLGVVRPVFRLPY+PLPLA+RIE
Sbjct: 273 RKLMFEGKNSELNSKLLPLIDWLFQEPNPIALNTALAQLGVVRPVFRLPYMPLPLAKRIE 332

Query: 262 FVNIVKELGRENFVGEKDLQVLYDDDFKLVGRY 164
           FVN+VK++GRENFVGE ++QVL DDDF L+ RY
Sbjct: 333 FVNLVKKIGRENFVGENNVQVLDDDDFILISRY 365


>ref|XP_002320068.1| predicted protein [Populus trichocarpa] gi|222860841|gb|EEE98383.1|
           predicted protein [Populus trichocarpa]
          Length = 363

 Score =  465 bits (1196), Expect = e-129
 Identities = 217/272 (79%), Positives = 243/272 (89%)
 Frame = -2

Query: 982 MQIVNGADGVIVGGTTGEGHLMTWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAMHAS 803
           MQI NGA+GV+VGGTTGEG LM+WDEHIMLIGHTVNCFG SIKVIGNTGSNSTREA+HA+
Sbjct: 90  MQIANGAEGVVVGGTTGEGQLMSWDEHIMLIGHTVNCFGSSIKVIGNTGSNSTREAIHAT 149

Query: 802 EQGFTVGMHAALHINPYYGKTSLDGMVSHFEGVLSMGPTIIYNVPSRTCQDIPPSVIHRI 623
           EQGF VGMHAALHINPYYGKTS++GMVSHF+ VL MGPTIIYNVP RT QDIPP VIH I
Sbjct: 150 EQGFAVGMHAALHINPYYGKTSVEGMVSHFDSVLPMGPTIIYNVPGRTGQDIPPRVIHTI 209

Query: 622 AKNANFAGIKECMGNDRIKEYTDKGIAVWSGNDDQCHDARWNFGACGVITVASNLVPGLM 443
           A++ N AG+KEC GNDR+++YTDKGI VWSGNDDQCHDARWN GA GV++V SNLVPGLM
Sbjct: 210 AQSPNLAGVKECAGNDRVEQYTDKGIVVWSGNDDQCHDARWNHGATGVVSVTSNLVPGLM 269

Query: 442 HELMFGGCNTSLNSKLMPLIDWLFREPNPIGLNTALAQLGVVRPVFRLPYVPLPLARRIE 263
             LMF G N  LNSKL+PLIDWLF+EPNPI LNTALAQLGV RPVFRLPYVPLP A+R+E
Sbjct: 270 RRLMFEGKNAELNSKLLPLIDWLFQEPNPIALNTALAQLGVARPVFRLPYVPLPSAQRVE 329

Query: 262 FVNIVKELGRENFVGEKDLQVLYDDDFKLVGR 167
           FVN+VK++GRENFVGE+D+QVL DDDF L+ R
Sbjct: 330 FVNLVKKIGRENFVGEEDVQVLEDDDFILIAR 361


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