BLASTX nr result
ID: Coptis24_contig00010090
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00010090
(1718 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN60906.1| hypothetical protein VITISV_028450 [Vitis vinifera] 140 1e-35
ref|XP_003633851.1| PREDICTED: ATP-dependent RNA helicase SUPV3L... 140 1e-35
ref|XP_004159798.1| PREDICTED: ATP-dependent RNA helicase SUPV3L... 141 6e-31
ref|XP_004138587.1| PREDICTED: ATP-dependent RNA helicase SUPV3L... 141 6e-31
ref|XP_002524370.1| ATP-dependent RNA and DNA helicase, putative... 134 4e-30
>emb|CAN60906.1| hypothetical protein VITISV_028450 [Vitis vinifera]
Length = 906
Score = 140 bits (352), Expect(2) = 1e-35
Identities = 72/132 (54%), Positives = 85/132 (64%)
Frame = -2
Query: 1717 NFCFAPVNVRDPKVMFHLQKFAQSYSQNLPVSIQMGMPKYSARNNTELLDLEMKHQILSM 1538
NFCFAPVN+RDPK M+HL +FA SYSQNLPV+I MGMPK SARN++ELLDLE KHQ+LSM
Sbjct: 701 NFCFAPVNIRDPKAMYHLLRFASSYSQNLPVNIAMGMPKGSARNDSELLDLETKHQVLSM 760
Query: 1537 YLWLSFHFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXYATKAASMATDIAELLGKSIMN 1358
YLWLS HF E Y KA +MAT IA+LLG+S+
Sbjct: 761 YLWLSHHFTEE------------------------TFPYVKKAETMATGIADLLGQSLSK 796
Query: 1357 SNWKPRSKADSK 1322
+ WKP S+ K
Sbjct: 797 ACWKPESRQAGK 808
Score = 38.1 bits (87), Expect(2) = 1e-35
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = -3
Query: 1344 PEAKQTARPDTSKKGEGYERPLSLVNTFQKKTSEETSQ 1231
PE++Q +P +K +GYERP SLV F ++ E++ +
Sbjct: 801 PESRQAGKPKPQQKEDGYERPRSLVKLFDERRHEKSPE 838
Score = 46.2 bits (108), Expect(4) = 5e-12
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = -1
Query: 575 FVNGLARTLRSEDLCYLIECLDQPFLQVKKVGVSP*VEQCLLCSCQ 438
+ +GL TL +DL YLIECL QPF +KKVG+ P EQ L + Q
Sbjct: 605 YPDGLTTTLHLDDLDYLIECLKQPFDDIKKVGLFPFFEQVELFAGQ 650
Score = 43.9 bits (102), Expect(4) = 5e-12
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = -1
Query: 1082 FLPLVVETNALLGDLRNVQSEDCVVVIFQEQ--KYTR*RRRLRGEHCCGVVIYETMQPVV 909
F PLVVE LLG+L+NV+S DCVV + + + + CC VIY + P
Sbjct: 478 FKPLVVEAKTLLGELQNVRSGDCVVAFSRREIFEVKLAIEKHTNHRCC--VIYGALPPET 535
Query: 908 CREQAKL 888
R+QA L
Sbjct: 536 RRQQASL 542
Score = 23.9 bits (50), Expect(4) = 5e-12
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 772 LVASEIVGTSLKLTQKMVVSYTL 704
LVAS+ VG L L + VV Y+L
Sbjct: 553 LVASDAVGMGLNLNIRRVVFYSL 575
Score = 23.1 bits (48), Expect(4) = 5e-12
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 639 LPVLWTLVKQIARRAGCLGNTF 574
+PV T VKQIA RAG G+ +
Sbjct: 584 VPVPATQVKQIAGRAGRRGSRY 605
Score = 54.3 bits (129), Expect(2) = 9e-06
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = -3
Query: 126 GMPKGSARNDTELLDLETKHQILSMY 49
GMPKGSARND+ELLDLETKHQ+LSMY
Sbjct: 736 GMPKGSARNDSELLDLETKHQVLSMY 761
Score = 23.1 bits (48), Expect(2) = 9e-06
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 46 MYLWLSFHF 20
MYLWLS HF
Sbjct: 760 MYLWLSHHF 768
>ref|XP_003633851.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Vitis vinifera]
Length = 806
Score = 140 bits (352), Expect(2) = 1e-35
Identities = 72/132 (54%), Positives = 85/132 (64%)
Frame = -2
Query: 1717 NFCFAPVNVRDPKVMFHLQKFAQSYSQNLPVSIQMGMPKYSARNNTELLDLEMKHQILSM 1538
NFCFAPVN+RDPK M+HL +FA SYSQNLPV+I MGMPK SARN++ELLDLE KHQ+LSM
Sbjct: 654 NFCFAPVNIRDPKAMYHLLRFASSYSQNLPVNIAMGMPKGSARNDSELLDLETKHQVLSM 713
Query: 1537 YLWLSFHFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXYATKAASMATDIAELLGKSIMN 1358
YLWLS HF E Y KA +MAT IA+LLG+S+
Sbjct: 714 YLWLSHHFTEE------------------------TFPYVKKAETMATGIADLLGQSLSK 749
Query: 1357 SNWKPRSKADSK 1322
+ WKP S+ K
Sbjct: 750 ACWKPESRQAGK 761
Score = 38.1 bits (87), Expect(2) = 1e-35
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = -3
Query: 1344 PEAKQTARPDTSKKGEGYERPLSLVNTFQKKTSEETSQ 1231
PE++Q +P +K +GYERP SLV F ++ E++ +
Sbjct: 754 PESRQAGKPKPQQKEDGYERPRSLVKLFDERRHEKSPE 791
Score = 46.2 bits (108), Expect(4) = 5e-12
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = -1
Query: 575 FVNGLARTLRSEDLCYLIECLDQPFLQVKKVGVSP*VEQCLLCSCQ 438
+ +GL TL +DL YLIECL QPF +KKVG+ P EQ L + Q
Sbjct: 558 YPDGLTTTLHLDDLDYLIECLKQPFDDIKKVGLFPFFEQVELFAGQ 603
Score = 43.9 bits (102), Expect(4) = 5e-12
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = -1
Query: 1082 FLPLVVETNALLGDLRNVQSEDCVVVIFQEQ--KYTR*RRRLRGEHCCGVVIYETMQPVV 909
F PLVVE LLG+L+NV+S DCVV + + + + CC VIY + P
Sbjct: 431 FKPLVVEAKTLLGELQNVRSGDCVVAFSRREIFEVKLAIEKHTNHRCC--VIYGALPPET 488
Query: 908 CREQAKL 888
R+QA L
Sbjct: 489 RRQQASL 495
Score = 23.9 bits (50), Expect(4) = 5e-12
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 772 LVASEIVGTSLKLTQKMVVSYTL 704
LVAS+ VG L L + VV Y+L
Sbjct: 506 LVASDAVGMGLNLNIRRVVFYSL 528
Score = 23.1 bits (48), Expect(4) = 5e-12
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 639 LPVLWTLVKQIARRAGCLGNTF 574
+PV T VKQIA RAG G+ +
Sbjct: 537 VPVPATQVKQIAGRAGRRGSRY 558
Score = 54.3 bits (129), Expect(2) = 9e-06
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = -3
Query: 126 GMPKGSARNDTELLDLETKHQILSMY 49
GMPKGSARND+ELLDLETKHQ+LSMY
Sbjct: 689 GMPKGSARNDSELLDLETKHQVLSMY 714
Score = 23.1 bits (48), Expect(2) = 9e-06
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 46 MYLWLSFHF 20
MYLWLS HF
Sbjct: 713 MYLWLSHHF 721
>ref|XP_004159798.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Cucumis sativus]
Length = 795
Score = 141 bits (355), Expect = 6e-31
Identities = 73/132 (55%), Positives = 85/132 (64%)
Frame = -2
Query: 1717 NFCFAPVNVRDPKVMFHLQKFAQSYSQNLPVSIQMGMPKYSARNNTELLDLEMKHQILSM 1538
NFCFAPVNVRDPK M+HL +FA SYS N+PVSI MGMPK SAR+++ELLDLE KHQ+LSM
Sbjct: 664 NFCFAPVNVRDPKAMYHLLRFASSYSHNVPVSIAMGMPKGSARSDSELLDLESKHQVLSM 723
Query: 1537 YLWLSFHFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXYATKAASMATDIAELLGKSIMN 1358
YLWLS HFK E Y K MATDIA+LLG+S+
Sbjct: 724 YLWLSQHFKEE------------------------TFPYVKKVEVMATDIAKLLGQSLTK 759
Query: 1357 SNWKPRSKADSK 1322
+NWKP S+ K
Sbjct: 760 ANWKPESRQAGK 771
>ref|XP_004138587.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Cucumis sativus]
Length = 777
Score = 141 bits (355), Expect = 6e-31
Identities = 73/132 (55%), Positives = 85/132 (64%)
Frame = -2
Query: 1717 NFCFAPVNVRDPKVMFHLQKFAQSYSQNLPVSIQMGMPKYSARNNTELLDLEMKHQILSM 1538
NFCFAPVNVRDPK M+HL +FA SYS N+PVSI MGMPK SAR+++ELLDLE KHQ+LSM
Sbjct: 646 NFCFAPVNVRDPKAMYHLLRFASSYSHNVPVSIAMGMPKGSARSDSELLDLESKHQVLSM 705
Query: 1537 YLWLSFHFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXYATKAASMATDIAELLGKSIMN 1358
YLWLS HFK E Y K MATDIA+LLG+S+
Sbjct: 706 YLWLSQHFKEE------------------------TFPYVKKVEVMATDIAKLLGQSLTK 741
Query: 1357 SNWKPRSKADSK 1322
+NWKP S+ K
Sbjct: 742 ANWKPESRQAGK 753
>ref|XP_002524370.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
gi|223536331|gb|EEF37981.1| ATP-dependent RNA and DNA
helicase, putative [Ricinus communis]
Length = 820
Score = 134 bits (336), Expect(2) = 4e-30
Identities = 70/133 (52%), Positives = 83/133 (62%)
Frame = -2
Query: 1717 NFCFAPVNVRDPKVMFHLQKFAQSYSQNLPVSIQMGMPKYSARNNTELLDLEMKHQILSM 1538
NFCFAPVN+RDPK M+HL +FA SYSQ +PV I MGMPK SARN+TELL+LE KHQ+LSM
Sbjct: 674 NFCFAPVNIRDPKAMYHLLRFASSYSQKVPVGIAMGMPKGSARNDTELLNLETKHQVLSM 733
Query: 1537 YLWLSFHFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXYATKAASMATDIAELLGKSIMN 1358
YLWLS FK E Y KA +MAT+IA+LLG S+
Sbjct: 734 YLWLSHQFKEE------------------------TFPYKKKAEAMATEIADLLGDSLTK 769
Query: 1357 SNWKPRSKADSKA 1319
+ WK S+ KA
Sbjct: 770 ARWKLESRQAGKA 782
Score = 25.8 bits (55), Expect(2) = 4e-30
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -3
Query: 1341 EAKQTARPDTSKKGEGYERPLSLVNTFQKKTSEE 1240
E++Q + ++ +GY+RP SL+ + K+T E+
Sbjct: 775 ESRQAGKARAKQQKDGYKRPNSLIKRY-KETMED 807