BLASTX nr result

ID: Coptis24_contig00010090 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010090
         (1718 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN60906.1| hypothetical protein VITISV_028450 [Vitis vinifera]   140   1e-35
ref|XP_003633851.1| PREDICTED: ATP-dependent RNA helicase SUPV3L...   140   1e-35
ref|XP_004159798.1| PREDICTED: ATP-dependent RNA helicase SUPV3L...   141   6e-31
ref|XP_004138587.1| PREDICTED: ATP-dependent RNA helicase SUPV3L...   141   6e-31
ref|XP_002524370.1| ATP-dependent RNA and DNA helicase, putative...   134   4e-30

>emb|CAN60906.1| hypothetical protein VITISV_028450 [Vitis vinifera]
          Length = 906

 Score =  140 bits (352), Expect(2) = 1e-35
 Identities = 72/132 (54%), Positives = 85/132 (64%)
 Frame = -2

Query: 1717 NFCFAPVNVRDPKVMFHLQKFAQSYSQNLPVSIQMGMPKYSARNNTELLDLEMKHQILSM 1538
            NFCFAPVN+RDPK M+HL +FA SYSQNLPV+I MGMPK SARN++ELLDLE KHQ+LSM
Sbjct: 701  NFCFAPVNIRDPKAMYHLLRFASSYSQNLPVNIAMGMPKGSARNDSELLDLETKHQVLSM 760

Query: 1537 YLWLSFHFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXYATKAASMATDIAELLGKSIMN 1358
            YLWLS HF  E                           Y  KA +MAT IA+LLG+S+  
Sbjct: 761  YLWLSHHFTEE------------------------TFPYVKKAETMATGIADLLGQSLSK 796

Query: 1357 SNWKPRSKADSK 1322
            + WKP S+   K
Sbjct: 797  ACWKPESRQAGK 808



 Score = 38.1 bits (87), Expect(2) = 1e-35
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = -3

Query: 1344 PEAKQTARPDTSKKGEGYERPLSLVNTFQKKTSEETSQ 1231
            PE++Q  +P   +K +GYERP SLV  F ++  E++ +
Sbjct: 801  PESRQAGKPKPQQKEDGYERPRSLVKLFDERRHEKSPE 838



 Score = 46.2 bits (108), Expect(4) = 5e-12
 Identities = 24/46 (52%), Positives = 30/46 (65%)
 Frame = -1

Query: 575 FVNGLARTLRSEDLCYLIECLDQPFLQVKKVGVSP*VEQCLLCSCQ 438
           + +GL  TL  +DL YLIECL QPF  +KKVG+ P  EQ  L + Q
Sbjct: 605 YPDGLTTTLHLDDLDYLIECLKQPFDDIKKVGLFPFFEQVELFAGQ 650



 Score = 43.9 bits (102), Expect(4) = 5e-12
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = -1

Query: 1082 FLPLVVETNALLGDLRNVQSEDCVVVIFQEQ--KYTR*RRRLRGEHCCGVVIYETMQPVV 909
            F PLVVE   LLG+L+NV+S DCVV   + +  +      +     CC  VIY  + P  
Sbjct: 478  FKPLVVEAKTLLGELQNVRSGDCVVAFSRREIFEVKLAIEKHTNHRCC--VIYGALPPET 535

Query: 908  CREQAKL 888
             R+QA L
Sbjct: 536  RRQQASL 542



 Score = 23.9 bits (50), Expect(4) = 5e-12
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 772 LVASEIVGTSLKLTQKMVVSYTL 704
           LVAS+ VG  L L  + VV Y+L
Sbjct: 553 LVASDAVGMGLNLNIRRVVFYSL 575



 Score = 23.1 bits (48), Expect(4) = 5e-12
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 639 LPVLWTLVKQIARRAGCLGNTF 574
           +PV  T VKQIA RAG  G+ +
Sbjct: 584 VPVPATQVKQIAGRAGRRGSRY 605



 Score = 54.3 bits (129), Expect(2) = 9e-06
 Identities = 24/26 (92%), Positives = 26/26 (100%)
 Frame = -3

Query: 126 GMPKGSARNDTELLDLETKHQILSMY 49
           GMPKGSARND+ELLDLETKHQ+LSMY
Sbjct: 736 GMPKGSARNDSELLDLETKHQVLSMY 761



 Score = 23.1 bits (48), Expect(2) = 9e-06
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 46  MYLWLSFHF 20
           MYLWLS HF
Sbjct: 760 MYLWLSHHF 768


>ref|XP_003633851.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
            [Vitis vinifera]
          Length = 806

 Score =  140 bits (352), Expect(2) = 1e-35
 Identities = 72/132 (54%), Positives = 85/132 (64%)
 Frame = -2

Query: 1717 NFCFAPVNVRDPKVMFHLQKFAQSYSQNLPVSIQMGMPKYSARNNTELLDLEMKHQILSM 1538
            NFCFAPVN+RDPK M+HL +FA SYSQNLPV+I MGMPK SARN++ELLDLE KHQ+LSM
Sbjct: 654  NFCFAPVNIRDPKAMYHLLRFASSYSQNLPVNIAMGMPKGSARNDSELLDLETKHQVLSM 713

Query: 1537 YLWLSFHFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXYATKAASMATDIAELLGKSIMN 1358
            YLWLS HF  E                           Y  KA +MAT IA+LLG+S+  
Sbjct: 714  YLWLSHHFTEE------------------------TFPYVKKAETMATGIADLLGQSLSK 749

Query: 1357 SNWKPRSKADSK 1322
            + WKP S+   K
Sbjct: 750  ACWKPESRQAGK 761



 Score = 38.1 bits (87), Expect(2) = 1e-35
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = -3

Query: 1344 PEAKQTARPDTSKKGEGYERPLSLVNTFQKKTSEETSQ 1231
            PE++Q  +P   +K +GYERP SLV  F ++  E++ +
Sbjct: 754  PESRQAGKPKPQQKEDGYERPRSLVKLFDERRHEKSPE 791



 Score = 46.2 bits (108), Expect(4) = 5e-12
 Identities = 24/46 (52%), Positives = 30/46 (65%)
 Frame = -1

Query: 575 FVNGLARTLRSEDLCYLIECLDQPFLQVKKVGVSP*VEQCLLCSCQ 438
           + +GL  TL  +DL YLIECL QPF  +KKVG+ P  EQ  L + Q
Sbjct: 558 YPDGLTTTLHLDDLDYLIECLKQPFDDIKKVGLFPFFEQVELFAGQ 603



 Score = 43.9 bits (102), Expect(4) = 5e-12
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = -1

Query: 1082 FLPLVVETNALLGDLRNVQSEDCVVVIFQEQ--KYTR*RRRLRGEHCCGVVIYETMQPVV 909
            F PLVVE   LLG+L+NV+S DCVV   + +  +      +     CC  VIY  + P  
Sbjct: 431  FKPLVVEAKTLLGELQNVRSGDCVVAFSRREIFEVKLAIEKHTNHRCC--VIYGALPPET 488

Query: 908  CREQAKL 888
             R+QA L
Sbjct: 489  RRQQASL 495



 Score = 23.9 bits (50), Expect(4) = 5e-12
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 772 LVASEIVGTSLKLTQKMVVSYTL 704
           LVAS+ VG  L L  + VV Y+L
Sbjct: 506 LVASDAVGMGLNLNIRRVVFYSL 528



 Score = 23.1 bits (48), Expect(4) = 5e-12
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 639 LPVLWTLVKQIARRAGCLGNTF 574
           +PV  T VKQIA RAG  G+ +
Sbjct: 537 VPVPATQVKQIAGRAGRRGSRY 558



 Score = 54.3 bits (129), Expect(2) = 9e-06
 Identities = 24/26 (92%), Positives = 26/26 (100%)
 Frame = -3

Query: 126 GMPKGSARNDTELLDLETKHQILSMY 49
           GMPKGSARND+ELLDLETKHQ+LSMY
Sbjct: 689 GMPKGSARNDSELLDLETKHQVLSMY 714



 Score = 23.1 bits (48), Expect(2) = 9e-06
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 46  MYLWLSFHF 20
           MYLWLS HF
Sbjct: 713 MYLWLSHHF 721


>ref|XP_004159798.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
            [Cucumis sativus]
          Length = 795

 Score =  141 bits (355), Expect = 6e-31
 Identities = 73/132 (55%), Positives = 85/132 (64%)
 Frame = -2

Query: 1717 NFCFAPVNVRDPKVMFHLQKFAQSYSQNLPVSIQMGMPKYSARNNTELLDLEMKHQILSM 1538
            NFCFAPVNVRDPK M+HL +FA SYS N+PVSI MGMPK SAR+++ELLDLE KHQ+LSM
Sbjct: 664  NFCFAPVNVRDPKAMYHLLRFASSYSHNVPVSIAMGMPKGSARSDSELLDLESKHQVLSM 723

Query: 1537 YLWLSFHFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXYATKAASMATDIAELLGKSIMN 1358
            YLWLS HFK E                           Y  K   MATDIA+LLG+S+  
Sbjct: 724  YLWLSQHFKEE------------------------TFPYVKKVEVMATDIAKLLGQSLTK 759

Query: 1357 SNWKPRSKADSK 1322
            +NWKP S+   K
Sbjct: 760  ANWKPESRQAGK 771


>ref|XP_004138587.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
            [Cucumis sativus]
          Length = 777

 Score =  141 bits (355), Expect = 6e-31
 Identities = 73/132 (55%), Positives = 85/132 (64%)
 Frame = -2

Query: 1717 NFCFAPVNVRDPKVMFHLQKFAQSYSQNLPVSIQMGMPKYSARNNTELLDLEMKHQILSM 1538
            NFCFAPVNVRDPK M+HL +FA SYS N+PVSI MGMPK SAR+++ELLDLE KHQ+LSM
Sbjct: 646  NFCFAPVNVRDPKAMYHLLRFASSYSHNVPVSIAMGMPKGSARSDSELLDLESKHQVLSM 705

Query: 1537 YLWLSFHFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXYATKAASMATDIAELLGKSIMN 1358
            YLWLS HFK E                           Y  K   MATDIA+LLG+S+  
Sbjct: 706  YLWLSQHFKEE------------------------TFPYVKKVEVMATDIAKLLGQSLTK 741

Query: 1357 SNWKPRSKADSK 1322
            +NWKP S+   K
Sbjct: 742  ANWKPESRQAGK 753


>ref|XP_002524370.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
            gi|223536331|gb|EEF37981.1| ATP-dependent RNA and DNA
            helicase, putative [Ricinus communis]
          Length = 820

 Score =  134 bits (336), Expect(2) = 4e-30
 Identities = 70/133 (52%), Positives = 83/133 (62%)
 Frame = -2

Query: 1717 NFCFAPVNVRDPKVMFHLQKFAQSYSQNLPVSIQMGMPKYSARNNTELLDLEMKHQILSM 1538
            NFCFAPVN+RDPK M+HL +FA SYSQ +PV I MGMPK SARN+TELL+LE KHQ+LSM
Sbjct: 674  NFCFAPVNIRDPKAMYHLLRFASSYSQKVPVGIAMGMPKGSARNDTELLNLETKHQVLSM 733

Query: 1537 YLWLSFHFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXYATKAASMATDIAELLGKSIMN 1358
            YLWLS  FK E                           Y  KA +MAT+IA+LLG S+  
Sbjct: 734  YLWLSHQFKEE------------------------TFPYKKKAEAMATEIADLLGDSLTK 769

Query: 1357 SNWKPRSKADSKA 1319
            + WK  S+   KA
Sbjct: 770  ARWKLESRQAGKA 782



 Score = 25.8 bits (55), Expect(2) = 4e-30
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 1341 EAKQTARPDTSKKGEGYERPLSLVNTFQKKTSEE 1240
            E++Q  +    ++ +GY+RP SL+  + K+T E+
Sbjct: 775  ESRQAGKARAKQQKDGYKRPNSLIKRY-KETMED 807


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