BLASTX nr result
ID: Coptis24_contig00010090
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00010090 (1718 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAN60906.1| hypothetical protein VITISV_028450 [Vitis vinifera] 140 1e-35 ref|XP_003633851.1| PREDICTED: ATP-dependent RNA helicase SUPV3L... 140 1e-35 ref|XP_004159798.1| PREDICTED: ATP-dependent RNA helicase SUPV3L... 141 6e-31 ref|XP_004138587.1| PREDICTED: ATP-dependent RNA helicase SUPV3L... 141 6e-31 ref|XP_002524370.1| ATP-dependent RNA and DNA helicase, putative... 134 4e-30 >emb|CAN60906.1| hypothetical protein VITISV_028450 [Vitis vinifera] Length = 906 Score = 140 bits (352), Expect(2) = 1e-35 Identities = 72/132 (54%), Positives = 85/132 (64%) Frame = -2 Query: 1717 NFCFAPVNVRDPKVMFHLQKFAQSYSQNLPVSIQMGMPKYSARNNTELLDLEMKHQILSM 1538 NFCFAPVN+RDPK M+HL +FA SYSQNLPV+I MGMPK SARN++ELLDLE KHQ+LSM Sbjct: 701 NFCFAPVNIRDPKAMYHLLRFASSYSQNLPVNIAMGMPKGSARNDSELLDLETKHQVLSM 760 Query: 1537 YLWLSFHFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXYATKAASMATDIAELLGKSIMN 1358 YLWLS HF E Y KA +MAT IA+LLG+S+ Sbjct: 761 YLWLSHHFTEE------------------------TFPYVKKAETMATGIADLLGQSLSK 796 Query: 1357 SNWKPRSKADSK 1322 + WKP S+ K Sbjct: 797 ACWKPESRQAGK 808 Score = 38.1 bits (87), Expect(2) = 1e-35 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = -3 Query: 1344 PEAKQTARPDTSKKGEGYERPLSLVNTFQKKTSEETSQ 1231 PE++Q +P +K +GYERP SLV F ++ E++ + Sbjct: 801 PESRQAGKPKPQQKEDGYERPRSLVKLFDERRHEKSPE 838 Score = 46.2 bits (108), Expect(4) = 5e-12 Identities = 24/46 (52%), Positives = 30/46 (65%) Frame = -1 Query: 575 FVNGLARTLRSEDLCYLIECLDQPFLQVKKVGVSP*VEQCLLCSCQ 438 + +GL TL +DL YLIECL QPF +KKVG+ P EQ L + Q Sbjct: 605 YPDGLTTTLHLDDLDYLIECLKQPFDDIKKVGLFPFFEQVELFAGQ 650 Score = 43.9 bits (102), Expect(4) = 5e-12 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Frame = -1 Query: 1082 FLPLVVETNALLGDLRNVQSEDCVVVIFQEQ--KYTR*RRRLRGEHCCGVVIYETMQPVV 909 F PLVVE LLG+L+NV+S DCVV + + + + CC VIY + P Sbjct: 478 FKPLVVEAKTLLGELQNVRSGDCVVAFSRREIFEVKLAIEKHTNHRCC--VIYGALPPET 535 Query: 908 CREQAKL 888 R+QA L Sbjct: 536 RRQQASL 542 Score = 23.9 bits (50), Expect(4) = 5e-12 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -2 Query: 772 LVASEIVGTSLKLTQKMVVSYTL 704 LVAS+ VG L L + VV Y+L Sbjct: 553 LVASDAVGMGLNLNIRRVVFYSL 575 Score = 23.1 bits (48), Expect(4) = 5e-12 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -3 Query: 639 LPVLWTLVKQIARRAGCLGNTF 574 +PV T VKQIA RAG G+ + Sbjct: 584 VPVPATQVKQIAGRAGRRGSRY 605 Score = 54.3 bits (129), Expect(2) = 9e-06 Identities = 24/26 (92%), Positives = 26/26 (100%) Frame = -3 Query: 126 GMPKGSARNDTELLDLETKHQILSMY 49 GMPKGSARND+ELLDLETKHQ+LSMY Sbjct: 736 GMPKGSARNDSELLDLETKHQVLSMY 761 Score = 23.1 bits (48), Expect(2) = 9e-06 Identities = 8/9 (88%), Positives = 8/9 (88%) Frame = -2 Query: 46 MYLWLSFHF 20 MYLWLS HF Sbjct: 760 MYLWLSHHF 768 >ref|XP_003633851.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Vitis vinifera] Length = 806 Score = 140 bits (352), Expect(2) = 1e-35 Identities = 72/132 (54%), Positives = 85/132 (64%) Frame = -2 Query: 1717 NFCFAPVNVRDPKVMFHLQKFAQSYSQNLPVSIQMGMPKYSARNNTELLDLEMKHQILSM 1538 NFCFAPVN+RDPK M+HL +FA SYSQNLPV+I MGMPK SARN++ELLDLE KHQ+LSM Sbjct: 654 NFCFAPVNIRDPKAMYHLLRFASSYSQNLPVNIAMGMPKGSARNDSELLDLETKHQVLSM 713 Query: 1537 YLWLSFHFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXYATKAASMATDIAELLGKSIMN 1358 YLWLS HF E Y KA +MAT IA+LLG+S+ Sbjct: 714 YLWLSHHFTEE------------------------TFPYVKKAETMATGIADLLGQSLSK 749 Query: 1357 SNWKPRSKADSK 1322 + WKP S+ K Sbjct: 750 ACWKPESRQAGK 761 Score = 38.1 bits (87), Expect(2) = 1e-35 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = -3 Query: 1344 PEAKQTARPDTSKKGEGYERPLSLVNTFQKKTSEETSQ 1231 PE++Q +P +K +GYERP SLV F ++ E++ + Sbjct: 754 PESRQAGKPKPQQKEDGYERPRSLVKLFDERRHEKSPE 791 Score = 46.2 bits (108), Expect(4) = 5e-12 Identities = 24/46 (52%), Positives = 30/46 (65%) Frame = -1 Query: 575 FVNGLARTLRSEDLCYLIECLDQPFLQVKKVGVSP*VEQCLLCSCQ 438 + +GL TL +DL YLIECL QPF +KKVG+ P EQ L + Q Sbjct: 558 YPDGLTTTLHLDDLDYLIECLKQPFDDIKKVGLFPFFEQVELFAGQ 603 Score = 43.9 bits (102), Expect(4) = 5e-12 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Frame = -1 Query: 1082 FLPLVVETNALLGDLRNVQSEDCVVVIFQEQ--KYTR*RRRLRGEHCCGVVIYETMQPVV 909 F PLVVE LLG+L+NV+S DCVV + + + + CC VIY + P Sbjct: 431 FKPLVVEAKTLLGELQNVRSGDCVVAFSRREIFEVKLAIEKHTNHRCC--VIYGALPPET 488 Query: 908 CREQAKL 888 R+QA L Sbjct: 489 RRQQASL 495 Score = 23.9 bits (50), Expect(4) = 5e-12 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -2 Query: 772 LVASEIVGTSLKLTQKMVVSYTL 704 LVAS+ VG L L + VV Y+L Sbjct: 506 LVASDAVGMGLNLNIRRVVFYSL 528 Score = 23.1 bits (48), Expect(4) = 5e-12 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -3 Query: 639 LPVLWTLVKQIARRAGCLGNTF 574 +PV T VKQIA RAG G+ + Sbjct: 537 VPVPATQVKQIAGRAGRRGSRY 558 Score = 54.3 bits (129), Expect(2) = 9e-06 Identities = 24/26 (92%), Positives = 26/26 (100%) Frame = -3 Query: 126 GMPKGSARNDTELLDLETKHQILSMY 49 GMPKGSARND+ELLDLETKHQ+LSMY Sbjct: 689 GMPKGSARNDSELLDLETKHQVLSMY 714 Score = 23.1 bits (48), Expect(2) = 9e-06 Identities = 8/9 (88%), Positives = 8/9 (88%) Frame = -2 Query: 46 MYLWLSFHF 20 MYLWLS HF Sbjct: 713 MYLWLSHHF 721 >ref|XP_004159798.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Cucumis sativus] Length = 795 Score = 141 bits (355), Expect = 6e-31 Identities = 73/132 (55%), Positives = 85/132 (64%) Frame = -2 Query: 1717 NFCFAPVNVRDPKVMFHLQKFAQSYSQNLPVSIQMGMPKYSARNNTELLDLEMKHQILSM 1538 NFCFAPVNVRDPK M+HL +FA SYS N+PVSI MGMPK SAR+++ELLDLE KHQ+LSM Sbjct: 664 NFCFAPVNVRDPKAMYHLLRFASSYSHNVPVSIAMGMPKGSARSDSELLDLESKHQVLSM 723 Query: 1537 YLWLSFHFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXYATKAASMATDIAELLGKSIMN 1358 YLWLS HFK E Y K MATDIA+LLG+S+ Sbjct: 724 YLWLSQHFKEE------------------------TFPYVKKVEVMATDIAKLLGQSLTK 759 Query: 1357 SNWKPRSKADSK 1322 +NWKP S+ K Sbjct: 760 ANWKPESRQAGK 771 >ref|XP_004138587.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Cucumis sativus] Length = 777 Score = 141 bits (355), Expect = 6e-31 Identities = 73/132 (55%), Positives = 85/132 (64%) Frame = -2 Query: 1717 NFCFAPVNVRDPKVMFHLQKFAQSYSQNLPVSIQMGMPKYSARNNTELLDLEMKHQILSM 1538 NFCFAPVNVRDPK M+HL +FA SYS N+PVSI MGMPK SAR+++ELLDLE KHQ+LSM Sbjct: 646 NFCFAPVNVRDPKAMYHLLRFASSYSHNVPVSIAMGMPKGSARSDSELLDLESKHQVLSM 705 Query: 1537 YLWLSFHFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXYATKAASMATDIAELLGKSIMN 1358 YLWLS HFK E Y K MATDIA+LLG+S+ Sbjct: 706 YLWLSQHFKEE------------------------TFPYVKKVEVMATDIAKLLGQSLTK 741 Query: 1357 SNWKPRSKADSK 1322 +NWKP S+ K Sbjct: 742 ANWKPESRQAGK 753 >ref|XP_002524370.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis] gi|223536331|gb|EEF37981.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis] Length = 820 Score = 134 bits (336), Expect(2) = 4e-30 Identities = 70/133 (52%), Positives = 83/133 (62%) Frame = -2 Query: 1717 NFCFAPVNVRDPKVMFHLQKFAQSYSQNLPVSIQMGMPKYSARNNTELLDLEMKHQILSM 1538 NFCFAPVN+RDPK M+HL +FA SYSQ +PV I MGMPK SARN+TELL+LE KHQ+LSM Sbjct: 674 NFCFAPVNIRDPKAMYHLLRFASSYSQKVPVGIAMGMPKGSARNDTELLNLETKHQVLSM 733 Query: 1537 YLWLSFHFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXYATKAASMATDIAELLGKSIMN 1358 YLWLS FK E Y KA +MAT+IA+LLG S+ Sbjct: 734 YLWLSHQFKEE------------------------TFPYKKKAEAMATEIADLLGDSLTK 769 Query: 1357 SNWKPRSKADSKA 1319 + WK S+ KA Sbjct: 770 ARWKLESRQAGKA 782 Score = 25.8 bits (55), Expect(2) = 4e-30 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = -3 Query: 1341 EAKQTARPDTSKKGEGYERPLSLVNTFQKKTSEE 1240 E++Q + ++ +GY+RP SL+ + K+T E+ Sbjct: 775 ESRQAGKARAKQQKDGYKRPNSLIKRY-KETMED 807