BLASTX nr result
ID: Coptis24_contig00010041
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00010041 (1525 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAJ33886.1| unnamed protein product [Thellungiella halophila] 654 0.0 ref|NP_172405.1| RNA binding protein [Arabidopsis thaliana] gi|7... 651 0.0 gb|AAL32648.1| g5bf protein [Arabidopsis thaliana] 650 0.0 emb|CAA71589.1| g5bf [Arabidopsis thaliana] 649 0.0 ref|XP_002889743.1| catalytic/ coenzyme binding protein [Arabido... 649 0.0 >dbj|BAJ33886.1| unnamed protein product [Thellungiella halophila] Length = 379 Score = 654 bits (1687), Expect = 0.0 Identities = 316/380 (83%), Positives = 351/380 (92%) Frame = +1 Query: 175 MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVWHKPRSALQVTASSAKKILIM 354 MA+++++QQ QP+ G + + +QYK+KV+ +P+ AL V+ASS KKILIM Sbjct: 1 MAKIMMLQQSQPSFSLLTSSLSDFNGAKLHLQVQYKRKVY-QPKGALYVSASSEKKILIM 59 Query: 355 GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 534 GGTRFIG+FLSRLLVKEGHQVTLFTRGK+PIA+QLPGES++DF+DFSSKILHLKGDRKDY Sbjct: 60 GGTRFIGVFLSRLLVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119 Query: 535 DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHVEVD 714 DFVK+SL+AEGFDVVYDINGREAEEVEPI+DALPKLEQYIYCSSAGVYLKSD+LPH EVD Sbjct: 120 DFVKSSLSAEGFDVVYDINGREAEEVEPIIDALPKLEQYIYCSSAGVYLKSDILPHCEVD 179 Query: 715 AVDPKSRHKGKLETENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 894 AVDPKSRHKGKLETE+LLQS+ VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN Sbjct: 180 AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 239 Query: 895 SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEI 1074 SG+QI+QLGHVKDLATAF+ VLGNEKAS++IFNISGEKY+TFDGLA+ACAKA GFPEPEI Sbjct: 240 SGIQISQLGHVKDLATAFLAVLGNEKASREIFNISGEKYITFDGLARACAKAGGFPEPEI 299 Query: 1075 VHYNPKEFDFGKKKAFPFRDQHFFASVDKAKSVLGWKPEFDLIEGLADSYNLDFGRGTFR 1254 VHYNPKEFDFGKKKAFPFRDQHFFASV+KAK VLGWKPEFDL+EGL DSYNLDFGRGTFR Sbjct: 300 VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFR 359 Query: 1255 KAADFTTDDMILSKNLVLQS 1314 K ADFTTDDMILSK LVLQS Sbjct: 360 KEADFTTDDMILSKKLVLQS 379 >ref|NP_172405.1| RNA binding protein [Arabidopsis thaliana] gi|75313128|sp|Q9SA52.1|CP41B_ARATH RecName: Full=Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic; Short=CSP41-b; AltName: Full=Heteroglycan-interacting protein 1.3; AltName: Full=Protein CHLOROPLAST RNA BINDING; AltName: Full=Protein Gb5f; Flags: Precursor gi|11762234|gb|AAG40395.1|AF325043_1 At1g09340 [Arabidopsis thaliana] gi|16226247|gb|AAL16114.1|AF428282_1 At1g09340/T31J12_6 [Arabidopsis thaliana] gi|4337177|gb|AAD18098.1| Identical to gb|Y10557 g5bf gene from Arabidopsis thaliana. ESTs gb|R30578, gb|R90475, gb|T22384, gb|T22425, gb|N64934 and gb|T46767 come from this gene [Arabidopsis thaliana] gi|14334754|gb|AAK59555.1| putative RNA-binding protein [Arabidopsis thaliana] gi|17979099|gb|AAL47493.1| putative RNA-binding protein [Arabidopsis thaliana] gi|332190310|gb|AEE28431.1| RNA binding protein [Arabidopsis thaliana] Length = 378 Score = 651 bits (1680), Expect = 0.0 Identities = 316/379 (83%), Positives = 349/379 (92%) Frame = +1 Query: 175 MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVWHKPRSALQVTASSAKKILIM 354 MA+++++QQ QP+ G + + +QYK+KV H+P+ AL V+ASS KKILIM Sbjct: 1 MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKV-HQPKGALYVSASSEKKILIM 59 Query: 355 GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 534 GGTRFIG+FLSR+LVKEGHQVTLFTRGK+PIA+QLPGES++DF+DFSSKILHLKGDRKDY Sbjct: 60 GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119 Query: 535 DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHVEVD 714 DFVK+SL+AEGFDVVYDINGREAEEVEPIL+ALPKLEQYIYCSSAGVYLKSD+LPH E D Sbjct: 120 DFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEED 179 Query: 715 AVDPKSRHKGKLETENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 894 AVDPKSRHKGKLETE+LLQS+ VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN Sbjct: 180 AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 239 Query: 895 SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEI 1074 SG+QI+QLGHVKDLATAF+ VLGNEKAS++IFNISGEKYVTFDGLAKACAKA GFPEPEI Sbjct: 240 SGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEI 299 Query: 1075 VHYNPKEFDFGKKKAFPFRDQHFFASVDKAKSVLGWKPEFDLIEGLADSYNLDFGRGTFR 1254 VHYNPKEFDFGKKKAFPFRDQHFFASV+KAK VLGWKPEFDL+EGL DSYNLDFGRGTFR Sbjct: 300 VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFR 359 Query: 1255 KAADFTTDDMILSKNLVLQ 1311 K ADFTTDDMILSK LVLQ Sbjct: 360 KEADFTTDDMILSKKLVLQ 378 >gb|AAL32648.1| g5bf protein [Arabidopsis thaliana] Length = 378 Score = 650 bits (1676), Expect = 0.0 Identities = 315/379 (83%), Positives = 349/379 (92%) Frame = +1 Query: 175 MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVWHKPRSALQVTASSAKKILIM 354 MA+++++QQ QP+ G + + +QYK+KV H+P+ AL V+ASS KKILIM Sbjct: 1 MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKV-HQPKGALYVSASSEKKILIM 59 Query: 355 GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 534 GGTRFIG+FLSR+LVKEGHQVTLFTRGK+PIA+QLPGES++DF+DFSSKILHLKGDRKDY Sbjct: 60 GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119 Query: 535 DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHVEVD 714 DFVK+SL+AEGFDVVYDINGREAEEVEPIL+ALPKLEQYIYCSSAGVYLKSD+LPH E D Sbjct: 120 DFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEED 179 Query: 715 AVDPKSRHKGKLETENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 894 AVDPKSRHKGKLETE+LLQS+ VNWTSIRPVYIYGPLNYNPVE+WFFHRLKAGRPIPVPN Sbjct: 180 AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEKWFFHRLKAGRPIPVPN 239 Query: 895 SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEI 1074 SG+QI+QLGHVKDLATAF+ VLGNEKAS++IFNISGEKYVTFDGLAKACAKA GFPEPEI Sbjct: 240 SGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEI 299 Query: 1075 VHYNPKEFDFGKKKAFPFRDQHFFASVDKAKSVLGWKPEFDLIEGLADSYNLDFGRGTFR 1254 VHYNPKEFDFGKKKAFPFRDQHFFASV+KAK VLGWKPEFDL+EGL DSYNLDFGRGTFR Sbjct: 300 VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFR 359 Query: 1255 KAADFTTDDMILSKNLVLQ 1311 K ADFTTDDMILSK LVLQ Sbjct: 360 KEADFTTDDMILSKKLVLQ 378 >emb|CAA71589.1| g5bf [Arabidopsis thaliana] Length = 378 Score = 649 bits (1674), Expect = 0.0 Identities = 315/379 (83%), Positives = 348/379 (91%) Frame = +1 Query: 175 MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVWHKPRSALQVTASSAKKILIM 354 MA+++++QQ QP+ G + + +QYK+KV H+P+ AL V+ASS KKILIM Sbjct: 1 MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKV-HQPKGALYVSASSEKKILIM 59 Query: 355 GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 534 GGTRFIG+FLSR+LVKEGHQVTLFTRGK+PIA+QLPGES++DF+DFSSKILHLKGDRKDY Sbjct: 60 GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119 Query: 535 DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHVEVD 714 DFVK+SL+AEGFDVVYDINGREAEEVEPIL+ALPKLEQYIYCSSAGVYLK D+LPH E D Sbjct: 120 DFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKFDILPHCEED 179 Query: 715 AVDPKSRHKGKLETENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 894 AVDPKSRHKGKLETE+LLQS+ VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN Sbjct: 180 AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 239 Query: 895 SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEI 1074 SG+QI+QLGHVKDLATAF+ VLGNEKAS++IFNISGEKYVTFDGLAKACAKA GFPEPEI Sbjct: 240 SGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEI 299 Query: 1075 VHYNPKEFDFGKKKAFPFRDQHFFASVDKAKSVLGWKPEFDLIEGLADSYNLDFGRGTFR 1254 VHYNPKEFDFGKKKAFPFRDQHFFASV+KAK VLGWKPEFDL+EGL DSYNLDFGRGTFR Sbjct: 300 VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFR 359 Query: 1255 KAADFTTDDMILSKNLVLQ 1311 K ADFTTDDMILSK LVLQ Sbjct: 360 KEADFTTDDMILSKKLVLQ 378 >ref|XP_002889743.1| catalytic/ coenzyme binding protein [Arabidopsis lyrata subsp. lyrata] gi|297335585|gb|EFH66002.1| catalytic/ coenzyme binding protein [Arabidopsis lyrata subsp. lyrata] Length = 378 Score = 649 bits (1674), Expect = 0.0 Identities = 314/379 (82%), Positives = 347/379 (91%) Frame = +1 Query: 175 MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVWHKPRSALQVTASSAKKILIM 354 MA+++++QQ QP+ G + + +QYK+KV H+P+ AL V+ASS KKILIM Sbjct: 1 MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKV-HQPKGALHVSASSEKKILIM 59 Query: 355 GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 534 GGTRFIG+FLSRLLVK GHQVTLFTRGK+PIA+QLPGES++DF+DFSSKILHLKGDRKDY Sbjct: 60 GGTRFIGVFLSRLLVKGGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119 Query: 535 DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHVEVD 714 DFVK+SL+AEGFDVVYDINGREAEEVEPI+DALPKLEQYIYCSSAGVYLKSD+LPH E D Sbjct: 120 DFVKSSLSAEGFDVVYDINGREAEEVEPIIDALPKLEQYIYCSSAGVYLKSDILPHCEED 179 Query: 715 AVDPKSRHKGKLETENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 894 AVDPKSRHKGKLETE+LLQS+ VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN Sbjct: 180 AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 239 Query: 895 SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEI 1074 SG+QI+QLGHVKDL TAF+ VLGNEKAS++IFNISGEKYVTFDGLAKACAKA GFPEPEI Sbjct: 240 SGIQISQLGHVKDLGTAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEI 299 Query: 1075 VHYNPKEFDFGKKKAFPFRDQHFFASVDKAKSVLGWKPEFDLIEGLADSYNLDFGRGTFR 1254 VHYNPKEFDFGKKKAFPFRDQHFFASV+KAK VLGWKPEFDL+EGL DSYNLDFGRGTFR Sbjct: 300 VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFR 359 Query: 1255 KAADFTTDDMILSKNLVLQ 1311 K ADFTTDDM+LSK LVLQ Sbjct: 360 KEADFTTDDMVLSKKLVLQ 378