BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010041
         (1525 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAJ33886.1| unnamed protein product [Thellungiella halophila]     654   0.0  
ref|NP_172405.1| RNA binding protein [Arabidopsis thaliana] gi|7...   651   0.0  
gb|AAL32648.1| g5bf protein [Arabidopsis thaliana]                    650   0.0  
emb|CAA71589.1| g5bf [Arabidopsis thaliana]                           649   0.0  
ref|XP_002889743.1| catalytic/ coenzyme binding protein [Arabido...   649   0.0  

>dbj|BAJ33886.1| unnamed protein product [Thellungiella halophila]
          Length = 379

 Score =  654 bits (1687), Expect = 0.0
 Identities = 316/380 (83%), Positives = 351/380 (92%)
 Frame = +1

Query: 175  MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVWHKPRSALQVTASSAKKILIM 354
            MA+++++QQ QP+            G + +  +QYK+KV+ +P+ AL V+ASS KKILIM
Sbjct: 1    MAKIMMLQQSQPSFSLLTSSLSDFNGAKLHLQVQYKRKVY-QPKGALYVSASSEKKILIM 59

Query: 355  GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 534
            GGTRFIG+FLSRLLVKEGHQVTLFTRGK+PIA+QLPGES++DF+DFSSKILHLKGDRKDY
Sbjct: 60   GGTRFIGVFLSRLLVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119

Query: 535  DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHVEVD 714
            DFVK+SL+AEGFDVVYDINGREAEEVEPI+DALPKLEQYIYCSSAGVYLKSD+LPH EVD
Sbjct: 120  DFVKSSLSAEGFDVVYDINGREAEEVEPIIDALPKLEQYIYCSSAGVYLKSDILPHCEVD 179

Query: 715  AVDPKSRHKGKLETENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 894
            AVDPKSRHKGKLETE+LLQS+ VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN
Sbjct: 180  AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 239

Query: 895  SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEI 1074
            SG+QI+QLGHVKDLATAF+ VLGNEKAS++IFNISGEKY+TFDGLA+ACAKA GFPEPEI
Sbjct: 240  SGIQISQLGHVKDLATAFLAVLGNEKASREIFNISGEKYITFDGLARACAKAGGFPEPEI 299

Query: 1075 VHYNPKEFDFGKKKAFPFRDQHFFASVDKAKSVLGWKPEFDLIEGLADSYNLDFGRGTFR 1254
            VHYNPKEFDFGKKKAFPFRDQHFFASV+KAK VLGWKPEFDL+EGL DSYNLDFGRGTFR
Sbjct: 300  VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFR 359

Query: 1255 KAADFTTDDMILSKNLVLQS 1314
            K ADFTTDDMILSK LVLQS
Sbjct: 360  KEADFTTDDMILSKKLVLQS 379


>ref|NP_172405.1| RNA binding protein [Arabidopsis thaliana]
            gi|75313128|sp|Q9SA52.1|CP41B_ARATH RecName:
            Full=Chloroplast stem-loop binding protein of 41 kDa b,
            chloroplastic; Short=CSP41-b; AltName:
            Full=Heteroglycan-interacting protein 1.3; AltName:
            Full=Protein CHLOROPLAST RNA BINDING; AltName:
            Full=Protein Gb5f; Flags: Precursor
            gi|11762234|gb|AAG40395.1|AF325043_1 At1g09340
            [Arabidopsis thaliana]
            gi|16226247|gb|AAL16114.1|AF428282_1 At1g09340/T31J12_6
            [Arabidopsis thaliana] gi|4337177|gb|AAD18098.1|
            Identical to gb|Y10557 g5bf gene from Arabidopsis
            thaliana. ESTs gb|R30578, gb|R90475, gb|T22384,
            gb|T22425, gb|N64934 and gb|T46767 come from this gene
            [Arabidopsis thaliana] gi|14334754|gb|AAK59555.1|
            putative RNA-binding protein [Arabidopsis thaliana]
            gi|17979099|gb|AAL47493.1| putative RNA-binding protein
            [Arabidopsis thaliana] gi|332190310|gb|AEE28431.1| RNA
            binding protein [Arabidopsis thaliana]
          Length = 378

 Score =  651 bits (1680), Expect = 0.0
 Identities = 316/379 (83%), Positives = 349/379 (92%)
 Frame = +1

Query: 175  MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVWHKPRSALQVTASSAKKILIM 354
            MA+++++QQ QP+            G + +  +QYK+KV H+P+ AL V+ASS KKILIM
Sbjct: 1    MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKV-HQPKGALYVSASSEKKILIM 59

Query: 355  GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 534
            GGTRFIG+FLSR+LVKEGHQVTLFTRGK+PIA+QLPGES++DF+DFSSKILHLKGDRKDY
Sbjct: 60   GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119

Query: 535  DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHVEVD 714
            DFVK+SL+AEGFDVVYDINGREAEEVEPIL+ALPKLEQYIYCSSAGVYLKSD+LPH E D
Sbjct: 120  DFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEED 179

Query: 715  AVDPKSRHKGKLETENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 894
            AVDPKSRHKGKLETE+LLQS+ VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN
Sbjct: 180  AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 239

Query: 895  SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEI 1074
            SG+QI+QLGHVKDLATAF+ VLGNEKAS++IFNISGEKYVTFDGLAKACAKA GFPEPEI
Sbjct: 240  SGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEI 299

Query: 1075 VHYNPKEFDFGKKKAFPFRDQHFFASVDKAKSVLGWKPEFDLIEGLADSYNLDFGRGTFR 1254
            VHYNPKEFDFGKKKAFPFRDQHFFASV+KAK VLGWKPEFDL+EGL DSYNLDFGRGTFR
Sbjct: 300  VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFR 359

Query: 1255 KAADFTTDDMILSKNLVLQ 1311
            K ADFTTDDMILSK LVLQ
Sbjct: 360  KEADFTTDDMILSKKLVLQ 378


>gb|AAL32648.1| g5bf protein [Arabidopsis thaliana]
          Length = 378

 Score =  650 bits (1676), Expect = 0.0
 Identities = 315/379 (83%), Positives = 349/379 (92%)
 Frame = +1

Query: 175  MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVWHKPRSALQVTASSAKKILIM 354
            MA+++++QQ QP+            G + +  +QYK+KV H+P+ AL V+ASS KKILIM
Sbjct: 1    MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKV-HQPKGALYVSASSEKKILIM 59

Query: 355  GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 534
            GGTRFIG+FLSR+LVKEGHQVTLFTRGK+PIA+QLPGES++DF+DFSSKILHLKGDRKDY
Sbjct: 60   GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119

Query: 535  DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHVEVD 714
            DFVK+SL+AEGFDVVYDINGREAEEVEPIL+ALPKLEQYIYCSSAGVYLKSD+LPH E D
Sbjct: 120  DFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEED 179

Query: 715  AVDPKSRHKGKLETENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 894
            AVDPKSRHKGKLETE+LLQS+ VNWTSIRPVYIYGPLNYNPVE+WFFHRLKAGRPIPVPN
Sbjct: 180  AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEKWFFHRLKAGRPIPVPN 239

Query: 895  SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEI 1074
            SG+QI+QLGHVKDLATAF+ VLGNEKAS++IFNISGEKYVTFDGLAKACAKA GFPEPEI
Sbjct: 240  SGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEI 299

Query: 1075 VHYNPKEFDFGKKKAFPFRDQHFFASVDKAKSVLGWKPEFDLIEGLADSYNLDFGRGTFR 1254
            VHYNPKEFDFGKKKAFPFRDQHFFASV+KAK VLGWKPEFDL+EGL DSYNLDFGRGTFR
Sbjct: 300  VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFR 359

Query: 1255 KAADFTTDDMILSKNLVLQ 1311
            K ADFTTDDMILSK LVLQ
Sbjct: 360  KEADFTTDDMILSKKLVLQ 378


>emb|CAA71589.1| g5bf [Arabidopsis thaliana]
          Length = 378

 Score =  649 bits (1674), Expect = 0.0
 Identities = 315/379 (83%), Positives = 348/379 (91%)
 Frame = +1

Query: 175  MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVWHKPRSALQVTASSAKKILIM 354
            MA+++++QQ QP+            G + +  +QYK+KV H+P+ AL V+ASS KKILIM
Sbjct: 1    MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKV-HQPKGALYVSASSEKKILIM 59

Query: 355  GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 534
            GGTRFIG+FLSR+LVKEGHQVTLFTRGK+PIA+QLPGES++DF+DFSSKILHLKGDRKDY
Sbjct: 60   GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119

Query: 535  DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHVEVD 714
            DFVK+SL+AEGFDVVYDINGREAEEVEPIL+ALPKLEQYIYCSSAGVYLK D+LPH E D
Sbjct: 120  DFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKFDILPHCEED 179

Query: 715  AVDPKSRHKGKLETENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 894
            AVDPKSRHKGKLETE+LLQS+ VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN
Sbjct: 180  AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 239

Query: 895  SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEI 1074
            SG+QI+QLGHVKDLATAF+ VLGNEKAS++IFNISGEKYVTFDGLAKACAKA GFPEPEI
Sbjct: 240  SGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEI 299

Query: 1075 VHYNPKEFDFGKKKAFPFRDQHFFASVDKAKSVLGWKPEFDLIEGLADSYNLDFGRGTFR 1254
            VHYNPKEFDFGKKKAFPFRDQHFFASV+KAK VLGWKPEFDL+EGL DSYNLDFGRGTFR
Sbjct: 300  VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFR 359

Query: 1255 KAADFTTDDMILSKNLVLQ 1311
            K ADFTTDDMILSK LVLQ
Sbjct: 360  KEADFTTDDMILSKKLVLQ 378


>ref|XP_002889743.1| catalytic/ coenzyme binding protein [Arabidopsis lyrata subsp.
            lyrata] gi|297335585|gb|EFH66002.1| catalytic/ coenzyme
            binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 378

 Score =  649 bits (1674), Expect = 0.0
 Identities = 314/379 (82%), Positives = 347/379 (91%)
 Frame = +1

Query: 175  MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVWHKPRSALQVTASSAKKILIM 354
            MA+++++QQ QP+            G + +  +QYK+KV H+P+ AL V+ASS KKILIM
Sbjct: 1    MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKV-HQPKGALHVSASSEKKILIM 59

Query: 355  GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 534
            GGTRFIG+FLSRLLVK GHQVTLFTRGK+PIA+QLPGES++DF+DFSSKILHLKGDRKDY
Sbjct: 60   GGTRFIGVFLSRLLVKGGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119

Query: 535  DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHVEVD 714
            DFVK+SL+AEGFDVVYDINGREAEEVEPI+DALPKLEQYIYCSSAGVYLKSD+LPH E D
Sbjct: 120  DFVKSSLSAEGFDVVYDINGREAEEVEPIIDALPKLEQYIYCSSAGVYLKSDILPHCEED 179

Query: 715  AVDPKSRHKGKLETENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 894
            AVDPKSRHKGKLETE+LLQS+ VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN
Sbjct: 180  AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 239

Query: 895  SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEI 1074
            SG+QI+QLGHVKDL TAF+ VLGNEKAS++IFNISGEKYVTFDGLAKACAKA GFPEPEI
Sbjct: 240  SGIQISQLGHVKDLGTAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEI 299

Query: 1075 VHYNPKEFDFGKKKAFPFRDQHFFASVDKAKSVLGWKPEFDLIEGLADSYNLDFGRGTFR 1254
            VHYNPKEFDFGKKKAFPFRDQHFFASV+KAK VLGWKPEFDL+EGL DSYNLDFGRGTFR
Sbjct: 300  VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFR 359

Query: 1255 KAADFTTDDMILSKNLVLQ 1311
            K ADFTTDDM+LSK LVLQ
Sbjct: 360  KEADFTTDDMVLSKKLVLQ 378