BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010035
         (1218 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI22720.3| unnamed protein product [Vitis vinifera]              395   e-108
ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III s...   384   e-104
ref|XP_003555382.1| PREDICTED: DNA-directed RNA polymerase III s...   314   3e-83
ref|XP_002321920.1| predicted protein [Populus trichocarpa] gi|2...   313   4e-83
ref|XP_003535613.1| PREDICTED: DNA-directed RNA polymerase III s...   310   4e-82

>emb|CBI22720.3| unnamed protein product [Vitis vinifera]
          Length = 524

 Score =  395 bits (1016), Expect = e-108
 Identities = 220/380 (57%), Positives = 269/380 (70%), Gaps = 7/380 (1%)
 Frame = +1

Query: 1    EKISKLVSEHFVERCPPSEPSVRL-QDGDNSTRKRGTKSASFVRT-KTLEQKVITAAVSL 174
            E   KLV  HFVERCP SEP +    + +   RKRG KSA  V   +T+EQ+ I AA  +
Sbjct: 152  ESFLKLVRAHFVERCPASEPFLAPPSEEETPARKRGAKSAKLVEEPQTIEQRAIAAAAPM 211

Query: 175  --KRFDFTMNTGADVISEANALRKPANVTVGEKRKVEALEMDD--GTIDEKDILWRANFE 342
              KRF   +NTG DV    N       VT GEKRK +ALE+D   G   EKD+LWRANFE
Sbjct: 212  DAKRFSVIINTGTDVDDSPN-------VTAGEKRKQDALELDKETGASCEKDVLWRANFE 264

Query: 343  EFICHLKQKACIASVRSRLDDEVGVTLNAVLDATRGPEKKVKVENSVPLSLDAIFEEVIK 522
            EF+  L+ KACIA+V++RLDD   + L+A+L+ATR  EKKVK ENSVPLS+D IFE V+K
Sbjct: 265  EFVRCLRHKACIANVKTRLDDGAAIVLSAMLEATRSEEKKVKTENSVPLSMDTIFEGVMK 324

Query: 523  SEEGRCMTKERVDLALSQMGCHPTTIGTKASYSVDVKNIIEIARKEEVESLISKRYGKDA 702
            SE GR MT ERV  +L Q+GC P   G   SYSVD+KNIIE+A+ +EVES+  KRYG+DA
Sbjct: 325  SEAGRSMTLERVRGSLIQLGCAPCVRGAAESYSVDLKNIIELAQNDEVESITLKRYGRDA 384

Query: 703  CRMFKLLWKNGELMETDKISDTAFVNKNEALKSLSNLGNDGYLQMEKPVSQGA-QSQFLL 879
             R+F+LL K+  L+ETDKISDT FV K +  K L  L  D YLQMEK    G+ QSQFLL
Sbjct: 385  YRIFRLLSKSCRLLETDKISDTTFVEKKDTAKILYQLWKDEYLQMEKLNLHGSRQSQFLL 444

Query: 880  WKVNKSSLGEHVFDEMCHAALNLRLRLAYELEQEHEILQLPKHKRIGAEGKRYERIRDVN 1059
            WKV K +L  HV +EM H+ALNL LR+AYELEQE EI+QLP+ KR+GA G R+ER+R V 
Sbjct: 445  WKVTKDTLWGHVLNEMYHSALNLSLRVAYELEQEQEIIQLPREKRVGALGNRFERLRKVR 504

Query: 1060 ILLESSLMKLDEALMLFHDY 1119
            ILLESSLMKLD+A+MLF+D+
Sbjct: 505  ILLESSLMKLDDAIMLFNDF 524


>ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Vitis
            vinifera]
          Length = 511

 Score =  384 bits (985), Expect = e-104
 Identities = 215/380 (56%), Positives = 264/380 (69%), Gaps = 7/380 (1%)
 Frame = +1

Query: 1    EKISKLVSEHFVERCPPSEPSVRL-QDGDNSTRKRGTKSASFVRT-KTLEQKVITAAVSL 174
            E   KLV  HFVERCP SEP +    + +   RKRG KSA  V   +T+EQ+ I AA  +
Sbjct: 145  ESFLKLVRAHFVERCPASEPFLAPPSEEETPARKRGAKSAKLVEEPQTIEQRAIAAAAPM 204

Query: 175  --KRFDFTMNTGADVISEANALRKPANVTVGEKRKVEALEMDD--GTIDEKDILWRANFE 342
              KRF   +NTG DV    N             RK +ALE+D   G   EKD+LWRANFE
Sbjct: 205  DAKRFSVIINTGTDVDDSPN-------------RKQDALELDKETGASCEKDVLWRANFE 251

Query: 343  EFICHLKQKACIASVRSRLDDEVGVTLNAVLDATRGPEKKVKVENSVPLSLDAIFEEVIK 522
            EF+  L+ KACIA+V++RLDD   + L+A+L+ATR  EKKVK ENSVPLS+D IFE V+K
Sbjct: 252  EFVRCLRHKACIANVKTRLDDGAAIVLSAMLEATRSEEKKVKTENSVPLSMDTIFEGVMK 311

Query: 523  SEEGRCMTKERVDLALSQMGCHPTTIGTKASYSVDVKNIIEIARKEEVESLISKRYGKDA 702
            SE GR MT ERV  +L Q+GC P   G   SYSVD+KNIIE+A+ +EVES+  KRYG+DA
Sbjct: 312  SEAGRSMTLERVRGSLIQLGCAPCVRGAAESYSVDLKNIIELAQNDEVESITLKRYGRDA 371

Query: 703  CRMFKLLWKNGELMETDKISDTAFVNKNEALKSLSNLGNDGYLQMEKPVSQGA-QSQFLL 879
             R+F+LL K+  L+ETDKISDT FV K +  K L  L  D YLQMEK    G+ QSQFLL
Sbjct: 372  YRIFRLLSKSCRLLETDKISDTTFVEKKDTAKILYQLWKDEYLQMEKLNLHGSRQSQFLL 431

Query: 880  WKVNKSSLGEHVFDEMCHAALNLRLRLAYELEQEHEILQLPKHKRIGAEGKRYERIRDVN 1059
            WKV K +L  HV +EM H+ALNL LR+AYELEQE EI+QLP+ KR+GA G R+ER+R V 
Sbjct: 432  WKVTKDTLWGHVLNEMYHSALNLSLRVAYELEQEQEIIQLPREKRVGALGNRFERLRKVR 491

Query: 1060 ILLESSLMKLDEALMLFHDY 1119
            ILLESSLMKLD+A+MLF+D+
Sbjct: 492  ILLESSLMKLDDAIMLFNDF 511


>ref|XP_003555382.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Glycine
            max]
          Length = 518

 Score =  314 bits (804), Expect = 3e-83
 Identities = 181/380 (47%), Positives = 246/380 (64%), Gaps = 7/380 (1%)
 Frame = +1

Query: 1    EKISKLVSEHFVERCPPSEPSVRLQDGDNSTRKRGTKSAS-FVRTKTLEQKVITAAV--S 171
            E + KL++  FVERCP  EP V     + +T+KRG KSA  F   +TLEQ+V+ AAV   
Sbjct: 152  ETLCKLLTARFVERCPAPEPVVSTSFKETTTKKRGAKSAKIFEAPETLEQRVVDAAVPGD 211

Query: 172  LKRFDFTMNTGADVISEANALRKPANVTVGEKRKVEALEMDDGTIDEKDILWRANFEEFI 351
            + RF  T N G++V  E N+              V  + +++    E+ ILWRANFEEFI
Sbjct: 212  VIRFSLTANMGSNVDRETNS------------DDVPMISVEEDVAKEEQILWRANFEEFI 259

Query: 352  CHLKQKACIASVRSRLDDEVGVTLNAVLDATRGPEKKVKVENSVPLSLDAIFEEVIKSEE 531
             HL+ K  I +VR++ DD     L+AVL+AT   EKKVK++NSVPLSLD I  EV+K++ 
Sbjct: 260  RHLRHKVLIENVRTQHDDGTATVLSAVLEATGSVEKKVKMDNSVPLSLDTIITEVMKTDT 319

Query: 532  GRCMTKERVDLALSQMGCHPTTIGTKASYSVDVKNIIEIARKEEVESLISKRYGKDACRM 711
            GR MT +R+  +L Q+GC P+ I  + SY +D+K IIE AR EEVES++ KRYG+DA RM
Sbjct: 320  GRTMTIDRIRASLVQLGCSPSMI-LEESYCIDLKKIIEPARNEEVESIVLKRYGRDAYRM 378

Query: 712  FKLLWKNGELMETDKISDTAFVNKNEALKSLSNLGNDGYLQMEK--PVSQGAQSQFLLWK 885
            F+LL K+    +TD+I+ +  V K EA K L  L  D YL MEK    +   Q   L+WK
Sbjct: 379  FRLLAKDCCFHDTDQIAASTLVEKKEASKLLYKLWKDNYLYMEKVGATAGAKQITILMWK 438

Query: 886  VNKSSLGEHVFDEMCHAALNLRLRLAYELEQEHEILQLPKHK--RIGAEGKRYERIRDVN 1059
            VNK  L E+V DEM HAALNL LR+A+E E++ E+L++PK K    G   K+Y+R+ +V 
Sbjct: 439  VNKPLLWEYVLDEMYHAALNLSLRMAFEQEKDEELLKVPKDKLREPGPLQKKYKRLLNVR 498

Query: 1060 ILLESSLMKLDEALMLFHDY 1119
            +L+ SSL+KLD+ALMLFHD+
Sbjct: 499  LLMGSSLLKLDDALMLFHDF 518


>ref|XP_002321920.1| predicted protein [Populus trichocarpa] gi|222868916|gb|EEF06047.1|
            predicted protein [Populus trichocarpa]
          Length = 519

 Score =  313 bits (803), Expect = 4e-83
 Identities = 180/382 (47%), Positives = 252/382 (65%), Gaps = 9/382 (2%)
 Frame = +1

Query: 1    EKISKLVSEHFVERCPPSEPSVRLQDGDNST--RKRGTKSA-SFVRTKTLEQKVITAAVS 171
            E + KLV   +VERCP SEP + L   + +   R+RG KSA +F+  +TLEQ+V+ AAV 
Sbjct: 148  ENMHKLVMARYVERCPISEPFLALPSEEEAAPVRRRGAKSAKAFLEPETLEQRVLVAAVP 207

Query: 172  LKRFDFTMNTGADVISEANALRKPANVTVGEKRKVEALEMD-DGTIDEKDI-LWRANFEE 345
             +   F+     ++ ++ + +   ++  +G+KRK++ALE D DG + +K + LWR NFEE
Sbjct: 208  PEGMRFSFELNPEIGADRDKVENNSSSNIGDKRKLDALESDIDGGVADKQVALWRVNFEE 267

Query: 346  FICHLKQKACIASVRSRLDDEVGVTLNAVLDATRGPEKKVKVENSVPLSLDAIFEEVIKS 525
            FI  L+ K CI +VR+RLDDE      A+LDA+R  EKK+K  +SVPLS ++I+ EVIKS
Sbjct: 268  FIRRLRHKICIETVRTRLDDEAATVFTAMLDASRSEEKKIKTASSVPLSENSIYAEVIKS 327

Query: 526  EEGRCMTKERVDLALSQMGCHPTTIG-TKASYSVDVKNIIEIARKEEVESLISKRYGKDA 702
            E+GR MT + V   L  +   P  +     SYS+D K+ IE+A+ +  ES++ K+YGKDA
Sbjct: 328  EKGRNMTLDYVISVLVGLSSSPPFVRVVDNSYSIDFKHTIEVAQTD--ESIVYKKYGKDA 385

Query: 703  CRMFKLLWKNGELMETDKISDTAFVNKNEALKSLSNLGNDGYLQMEKPVSQGAQSQFLLW 882
             RMF+LL K G L+ETDKISD+ F+ K E    LS +    YLQMEK ++    +QFLLW
Sbjct: 386  YRMFRLLSKAGRLLETDKISDSIFLEKKETANILSKMWQGDYLQMEKLIA--GPTQFLLW 443

Query: 883  KVNKSSLGEHVFDEMCHAALNLRLRLAYELEQEHEILQLPKHKRIGAEG---KRYERIRD 1053
            KVN  +L E V D+M HAALNL LR+AYELEQ+ EIL L      G +G   ++YE+++ 
Sbjct: 444  KVNMINLRERVLDDMFHAALNLSLRVAYELEQQKEILHL------GVDGPMKEKYEKLKK 497

Query: 1054 VNILLESSLMKLDEALMLFHDY 1119
            V  LLESS MKLD+A+M+FHD+
Sbjct: 498  VRFLLESSRMKLDDAIMIFHDF 519


>ref|XP_003535613.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Glycine
            max]
          Length = 510

 Score =  310 bits (795), Expect = 4e-82
 Identities = 183/380 (48%), Positives = 245/380 (64%), Gaps = 7/380 (1%)
 Frame = +1

Query: 1    EKISKLVSEHFVERCPPSEPSVRLQDGDNSTRKRGTKSAS-FVRTKTLEQKVITAAV--S 171
            E + KL++  FVERCP  EP V     + +TRKRG KSA  F   +TLEQ+V+ AAV   
Sbjct: 144  ETLCKLLTARFVERCPAPEPVVSTSFKETTTRKRGAKSAKIFEAPETLEQRVVDAAVPGD 203

Query: 172  LKRFDFTMNTGADVISEANALRKPANVTVGEKRKVEALEMDDGTIDEKDILWRANFEEFI 351
            + RF    +T   V  E N+               + + +++    E  ILWRANFEEFI
Sbjct: 204  VIRFSLAADTRCSVDRETNS------------DDAQMISVEEEVAKEGQILWRANFEEFI 251

Query: 352  CHLKQKACIASVRSRLDDEVGVTLNAVLDATRGPEKKVKVENSVPLSLDAIFEEVIKSEE 531
             HL+ K  I +VR++ DD     L+AVL+ATR  +KKVK ENSVPLSLD I  EV+K++ 
Sbjct: 252  RHLRHKVLIENVRTQHDDGTATVLSAVLEATRSVQKKVKTENSVPLSLDTIITEVMKTDT 311

Query: 532  GRCMTKERVDLALSQMGCHPTTIGTKASYSVDVKNIIEIARKEEVESLISKRYGKDACRM 711
            GR MT +R+  +L Q+GC P+ I  + SYS+D+K IIE AR EEVES++ KRYG D  R+
Sbjct: 312  GRTMTVDRIRASLVQLGCSPSMI-LEESYSIDLKKIIEPARNEEVESIVLKRYGTDGYRI 370

Query: 712  FKLLWKNGELMETDKISDTAFVNKNEALKSLSNLGNDGYLQMEK-PVSQGA-QSQFLLWK 885
            F+LL K+    +TD+I+ +  V K EA K L  L  D YL MEK   + GA Q+  L+WK
Sbjct: 371  FRLLAKDCCFHDTDQIAASTLVEKKEASKLLYKLWKDNYLYMEKVGATVGAKQTTILMWK 430

Query: 886  VNKSSLGEHVFDEMCHAALNLRLRLAYELEQEHEILQLPKHKRIGAE--GKRYERIRDVN 1059
            VNK  L E+V DEM HAALNL LR+A+E E++ E+L++PK KR G     K+Y+++ +V 
Sbjct: 431  VNKPLLWEYVLDEMYHAALNLSLRMAFEQEKDEELLKVPKDKRQGPGPLQKKYKKLLNVW 490

Query: 1060 ILLESSLMKLDEALMLFHDY 1119
            +LL SSLMKLD+ALMLFHD+
Sbjct: 491  LLLGSSLMKLDDALMLFHDF 510