BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010026
         (941 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI33123.3| unnamed protein product [Vitis vinifera]              275   e-110
ref|XP_002262798.2| PREDICTED: transcription initiation factor I...   266   e-107
ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|...   252   e-104
ref|XP_004152016.1| PREDICTED: transcription initiation factor I...   255   e-103
ref|XP_002308775.1| predicted protein [Populus trichocarpa] gi|2...   258   e-100

>emb|CBI33123.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  275 bits (702), Expect(2) = e-110
 Identities = 132/159 (83%), Positives = 143/159 (89%), Gaps = 2/159 (1%)
 Frame = +3

Query: 21  MSFDLHLKPQCGGCGSQKDLYGSNCKHLTLCINCGKKMAENRNKCYDCGVPVTRLIREYN 200
           MSFDL LKP C GCGS  DLYGSNCKH+TLC++CGK MAEN  KCYDCG PVTRLIREYN
Sbjct: 1   MSFDLMLKPSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYN 60

Query: 201 VRTNASTEKNYFIGRFVSGLP-FSKKKNAE-KWCIQKEGLQGRNVTDALREKYKNKPWLL 374
           VRTN+S +KNYFIGRFV+GLP FSKKKNA+ KW + KEGLQGR V+DALREKYKNKPWLL
Sbjct: 61  VRTNSSGDKNYFIGRFVTGLPGFSKKKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLL 120

Query: 375 EDETGQFQYHGQLEGSQSATYYLLVMQQGKEFVAIPAGS 491
           EDETGQ+QYHGQLEGSQSATYYLL+M QGKEFVAIPAGS
Sbjct: 121 EDETGQYQYHGQLEGSQSATYYLLMM-QGKEFVAIPAGS 158



 Score =  149 bits (377), Expect(2) = e-110
 Identities = 78/132 (59%), Positives = 83/132 (62%), Gaps = 2/132 (1%)
 Frame = +1

Query: 550 YNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPAAFGETEKFDEKDTGGA 729
           YNFNKVAQYKQLTLEEAEEKMKNRR+TADGYQRWMMKAANNGPAAFGE EK D+K+TGGA
Sbjct: 160 YNFNKVAQYKQLTLEEAEEKMKNRRRTADGYQRWMMKAANNGPAAFGEVEKLDDKETGGA 219

Query: 730 T--GRGNKKATADDDEGNASXXXXXXXXXXXXXKNRLGLNKXXXXXXXXXXXXXXXXXXX 903
              GRG KK T D++EGN S             KNRLGLNK                   
Sbjct: 220 AGGGRGRKKQTGDEEEGNVSDKAEEDEEEEAERKNRLGLNKRSGDDDEEGPRGGDHDLDD 279

Query: 904 XXXXXXXXWEHE 939
                   WEHE
Sbjct: 280 DDIEKGDDWEHE 291


>ref|XP_002262798.2| PREDICTED: transcription initiation factor IIF subunit alpha-like
           [Vitis vinifera]
          Length = 534

 Score =  266 bits (679), Expect(2) = e-107
 Identities = 127/153 (83%), Positives = 138/153 (90%), Gaps = 2/153 (1%)
 Frame = +3

Query: 39  LKPQCGGCGSQKDLYGSNCKHLTLCINCGKKMAENRNKCYDCGVPVTRLIREYNVRTNAS 218
           LKP C GCGS  DLYGSNCKH+TLC++CGK MAEN  KCYDCG PVTRLIREYNVRTN+S
Sbjct: 2   LKPSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYNVRTNSS 61

Query: 219 TEKNYFIGRFVSGLP-FSKKKNAE-KWCIQKEGLQGRNVTDALREKYKNKPWLLEDETGQ 392
            +KNYFIGRFV+GLP FSKKKNA+ KW + KEGLQGR V+DALREKYKNKPWLLEDETGQ
Sbjct: 62  GDKNYFIGRFVTGLPGFSKKKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLLEDETGQ 121

Query: 393 FQYHGQLEGSQSATYYLLVMQQGKEFVAIPAGS 491
           +QYHGQLEGSQSATYYLL+M QGKEFVAIPAGS
Sbjct: 122 YQYHGQLEGSQSATYYLLMM-QGKEFVAIPAGS 153



 Score =  149 bits (377), Expect(2) = e-107
 Identities = 78/132 (59%), Positives = 83/132 (62%), Gaps = 2/132 (1%)
 Frame = +1

Query: 550 YNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPAAFGETEKFDEKDTGGA 729
           YNFNKVAQYKQLTLEEAEEKMKNRR+TADGYQRWMMKAANNGPAAFGE EK D+K+TGGA
Sbjct: 155 YNFNKVAQYKQLTLEEAEEKMKNRRRTADGYQRWMMKAANNGPAAFGEVEKLDDKETGGA 214

Query: 730 T--GRGNKKATADDDEGNASXXXXXXXXXXXXXKNRLGLNKXXXXXXXXXXXXXXXXXXX 903
              GRG KK T D++EGN S             KNRLGLNK                   
Sbjct: 215 AGGGRGRKKQTGDEEEGNVSDKAEEDEEEEAERKNRLGLNKRSGDDDEEGPRGGDHDLDD 274

Query: 904 XXXXXXXXWEHE 939
                   WEHE
Sbjct: 275 DDIEKGDDWEHE 286


>ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis]
           gi|223541454|gb|EEF43004.1| tfiif-alpha, putative
           [Ricinus communis]
          Length = 533

 Score =  252 bits (643), Expect(2) = e-104
 Identities = 121/158 (76%), Positives = 137/158 (86%), Gaps = 2/158 (1%)
 Frame = +3

Query: 24  SFDLHLKPQCGGCGSQKDLYGSNCKHLTLCINCGKKMAENRNKCYDCGVPVTRLIREYNV 203
           + DL LK  C GCGS  DLYGSNCKH+TLC++CGK MAEN  KC+DCG  V+RLIREYNV
Sbjct: 3   TMDLMLKGSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHAKCFDCGATVSRLIREYNV 62

Query: 204 RTNASTEKNYFIGRFVSGLP-FSKKKNAE-KWCIQKEGLQGRNVTDALREKYKNKPWLLE 377
           R ++S++KNYFIGRFV+GLP FSKKKNAE KW +QKEGLQGR +TDALREKYKN+PWLLE
Sbjct: 63  RASSSSDKNYFIGRFVTGLPSFSKKKNAENKWSLQKEGLQGRQLTDALREKYKNRPWLLE 122

Query: 378 DETGQFQYHGQLEGSQSATYYLLVMQQGKEFVAIPAGS 491
           DETGQFQY G LEGSQSATYYLL++ QGKEFVAIPA S
Sbjct: 123 DETGQFQYQGHLEGSQSATYYLLIL-QGKEFVAIPASS 159



 Score =  153 bits (386), Expect(2) = e-104
 Identities = 77/130 (59%), Positives = 83/130 (63%)
 Frame = +1

Query: 550 YNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPAAFGETEKFDEKDTGGA 729
           YNFNKVAQYKQLTLEEAEEKM+NRRKTADGY+RWMMKAANNGPAAFGE EK D+KD+G A
Sbjct: 161 YNFNKVAQYKQLTLEEAEEKMRNRRKTADGYERWMMKAANNGPAAFGEVEKLDDKDSGAA 220

Query: 730 TGRGNKKATADDDEGNASXXXXXXXXXXXXXKNRLGLNKXXXXXXXXXXXXXXXXXXXXX 909
           +GRG KKA  DD+EGN S             KNRLGLNK                     
Sbjct: 221 SGRGRKKAAGDDEEGNVSDRGDEDEEEEAARKNRLGLNKRGGDDDEEGPRGGDHDIDDDD 280

Query: 910 XXXXXXWEHE 939
                 WEHE
Sbjct: 281 IEKGDDWEHE 290


>ref|XP_004152016.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           [Cucumis sativus] gi|449517383|ref|XP_004165725.1|
           PREDICTED: transcription initiation factor IIF subunit
           alpha-like [Cucumis sativus]
          Length = 538

 Score =  255 bits (652), Expect(2) = e-103
 Identities = 123/159 (77%), Positives = 137/159 (86%), Gaps = 2/159 (1%)
 Frame = +3

Query: 21  MSFDLHLKPQCGGCGSQKDLYGSNCKHLTLCINCGKKMAENRNKCYDCGVPVTRLIREYN 200
           MSFDL LK  C GCGS  +LYGSNCKH+TLC+ CGK MAEN+ KCYDCG  VTRLIREYN
Sbjct: 1   MSFDLLLKQSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYN 60

Query: 201 VRTNASTEKNYFIGRFVSGLP-FSKKKNAE-KWCIQKEGLQGRNVTDALREKYKNKPWLL 374
           VR +AS +KNYFIGRF+SGLP FSKK+NAE KW + KEGLQGR ++DALREKYKN+PWLL
Sbjct: 61  VRASASNDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGLQGRQLSDALREKYKNRPWLL 120

Query: 375 EDETGQFQYHGQLEGSQSATYYLLVMQQGKEFVAIPAGS 491
           EDETGQFQ+ G LEGSQSATYYLLV+ QGKEF AIPAGS
Sbjct: 121 EDETGQFQFQGHLEGSQSATYYLLVL-QGKEFTAIPAGS 158



 Score =  145 bits (366), Expect(2) = e-103
 Identities = 69/99 (69%), Positives = 79/99 (79%)
 Frame = +1

Query: 550 YNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPAAFGETEKFDEKDTGGA 729
           YNFNKVAQYKQLTLEEAEEKMKNR+KTADGY+RWMMKAA+NGPAAFGE EKFD+K+T G 
Sbjct: 160 YNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKETVGT 219

Query: 730 TGRGNKKATADDDEGNASXXXXXXXXXXXXXKNRLGLNK 846
           +GRG +K T D++EGN S             KNRLGL+K
Sbjct: 220 SGRGRRKTTGDENEGNVSDRGEEDEEEEAARKNRLGLSK 258


>ref|XP_002308775.1| predicted protein [Populus trichocarpa] gi|222854751|gb|EEE92298.1|
           predicted protein [Populus trichocarpa]
          Length = 541

 Score =  258 bits (659), Expect(2) = e-100
 Identities = 124/159 (77%), Positives = 136/159 (85%), Gaps = 2/159 (1%)
 Frame = +3

Query: 21  MSFDLHLKPQCGGCGSQKDLYGSNCKHLTLCINCGKKMAENRNKCYDCGVPVTRLIREYN 200
           MSFDL L+P C GCGS  DLYGSNCKH+TLC+ CGK MAENR KC+DCG  VTRLIREYN
Sbjct: 1   MSFDLQLQPSCSGCGSTTDLYGSNCKHMTLCLTCGKTMAENRGKCFDCGAIVTRLIREYN 60

Query: 201 VRTNASTEKNYFIGRFVSGLP-FSKKKNAE-KWCIQKEGLQGRNVTDALREKYKNKPWLL 374
           VR + S+EKNYFIGRFV+GLP FSKKKNAE KW + KEG+ GR +TD LREK+KNKPWLL
Sbjct: 61  VRASTSSEKNYFIGRFVTGLPGFSKKKNAENKWSLLKEGIHGRQITDTLREKFKNKPWLL 120

Query: 375 EDETGQFQYHGQLEGSQSATYYLLVMQQGKEFVAIPAGS 491
           EDETGQFQY G LEGSQSATYYLL+M  GKEFVAIPAGS
Sbjct: 121 EDETGQFQYQGHLEGSQSATYYLLMM-SGKEFVAIPAGS 158



 Score =  135 bits (339), Expect(2) = e-100
 Identities = 74/131 (56%), Positives = 78/131 (59%), Gaps = 1/131 (0%)
 Frame = +1

Query: 550 YNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPAAFGETEKFDEKDTGGA 729
           YNFNKVA YKQLTLEEAEEKMKNRRKTADGY+RWMMKAA+NG AAFGE EK D+KD   A
Sbjct: 162 YNFNKVAHYKQLTLEEAEEKMKNRRKTADGYERWMMKAAHNGAAAFGEVEKPDDKDGVSA 221

Query: 730 TGR-GNKKATADDDEGNASXXXXXXXXXXXXXKNRLGLNKXXXXXXXXXXXXXXXXXXXX 906
            GR G KKA  DDDEGN S             K+RLGLNK                    
Sbjct: 222 GGRGGRKKANGDDDEGNVSDKGEEDEEEEAGRKSRLGLNKGGGDDDEEGPRGGDLDMDDD 281

Query: 907 XXXXXXXWEHE 939
                  WEHE
Sbjct: 282 DIEKGDDWEHE 292