BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009968
         (5126 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280293.2| PREDICTED: endoribonuclease Dicer homolog 3a...  1929   0.0  
emb|CBI20740.3| unnamed protein product [Vitis vinifera]             1922   0.0  
gb|AEC12444.1| ribonuclease III family protein DCL3 [Gossypium h...  1773   0.0  
ref|XP_002516160.1| Ribonuclease III, putative [Ricinus communis...  1771   0.0  
ref|XP_004158269.1| PREDICTED: LOW QUALITY PROTEIN: endoribonucl...  1736   0.0  

>ref|XP_002280293.2| PREDICTED: endoribonuclease Dicer homolog 3a-like [Vitis vinifera]
          Length = 1648

 Score = 1929 bits (4997), Expect = 0.0
 Identities = 1013/1645 (61%), Positives = 1215/1645 (73%), Gaps = 19/1645 (1%)
 Frame = +3

Query: 36   SQEPVFKKQNGSHSVKSFDPRSYQKKVYEVARRRNTIAVLDTGAGKTMIAVMLIQEVGMV 215
            S  P     + S S K   PRSYQ KV+EVA+RRNTIAVLDTG GKTMIA+MLI+E+G  
Sbjct: 27   SNPPPSPLPSSSSSSKELSPRSYQWKVFEVAKRRNTIAVLDTGTGKTMIALMLIREIGQA 86

Query: 216  LKERKEKKLIIFLAPTVHLVNQQFQVIKSHTDLNVEEYFGEKGVDVWDSMRWETEANEND 395
            +K    K  IIFLAPTVHLVNQQF+VIK  T   VEEY+G KGVD W +  WE E +E+D
Sbjct: 87   VKADGRKLFIIFLAPTVHLVNQQFKVIKDSTGFEVEEYYGAKGVDEWSAKSWEKEISEHD 146

Query: 396  VLVMTPQILLDALRKAFLSLKLVCLLVFDECHRATGNHPYTKIMKEFYHKYSNKPKIFGM 575
            VLVMTPQILLDALRKAFLSL+ VCL++ DECHRATGNHPYTKIMKEFYHK  +KPKIFGM
Sbjct: 147  VLVMTPQILLDALRKAFLSLETVCLMIVDECHRATGNHPYTKIMKEFYHKSVDKPKIFGM 206

Query: 576  TASPVIRKGVSSAMDCEDQVSTLESILDSKIYTIEDRTELESFVPSPVEEKRYYNSILFF 755
            TASPVIRKGVSS+MDCE+Q+S LESILD +IYTIEDRTELE F+PS  E  R+Y++  F 
Sbjct: 207  TASPVIRKGVSSSMDCENQISELESILDCQIYTIEDRTELEVFIPSAKEINRFYDASQFH 266

Query: 756  HEELKEKLGSSRSKFDDLLVNKQGSLPSQYKDTDETFKALRKKLLSYHAKILHCLDGLGF 935
            + +LK KL SS SKFD+LL+N QGS  +QYKD D+  KALRK+L + HAKIL+CLD LG 
Sbjct: 267  NLDLKAKLKSSWSKFDNLLLNLQGSPMTQYKDMDDKLKALRKRLSNDHAKILYCLDDLGL 326

Query: 936  LCAYEAAKVCAETARSNSKDECELYRNSFVLCRNFLEDVLHIFEESLPHDYEQLFNMGFD 1115
            +CAYEA KVC E   SN+++E E YR S   C+ FL++VL I    LPH      N   D
Sbjct: 327  ICAYEAVKVCIENV-SNAQEEFEFYRQSSSQCKCFLQEVLGIIGGYLPHGDGNYLNSESD 385

Query: 1116 HLKAITMGYISPKLYELVQIFQLLGGSRELRCLIFVERIIAAKVIERFMRKVSSLSHLTV 1295
             LKA+  GYI+PKL+EL+Q+FQ  G +R++ CLIFVERII AKVIERF++K+  LSH TV
Sbjct: 386  ILKAVDKGYITPKLHELLQLFQSFGVARKVLCLIFVERIITAKVIERFIKKIIYLSHFTV 445

Query: 1296 SYLTGGGASVDALTRTMQKKTLESFRCGKVNLLFTTDVLEEGIDVPSCSCVIRFDLPKTV 1475
            SYLTG  +SVDAL    Q++TLESFR GKVNLLF TDV+EEGI VP+CSCVIRFDLPKTV
Sbjct: 446  SYLTGSNSSVDALAPKAQRETLESFRSGKVNLLFATDVVEEGIHVPNCSCVIRFDLPKTV 505

Query: 1476 RSYVQSRGRARQNGSRYVLMLERGNIEQRDMLYDLIRSEHSMTDSALTRDPNACISKVCD 1655
            RSYVQSRGRARQ+ S++++MLERGN EQRD L+D+IRSE+SMTD+A  RDP+    K   
Sbjct: 506  RSYVQSRGRARQSDSQFIIMLERGNTEQRDQLFDIIRSEYSMTDTATNRDPDGYTLKAYT 565

Query: 1656 TEEPDMYVVRSTGASVTADSCVSLIFRYCEKLPGDMYFTPKPKFQMILSGGLYECELTLP 1835
             EE D Y V STGASVTADS VSLI RYCEKLPGD YFTPKP F      G+YEC+LTLP
Sbjct: 566  IEEMDSYFVDSTGASVTADSSVSLIHRYCEKLPGDKYFTPKPFFHFTYLEGMYECKLTLP 625

Query: 1836 PSAPIQKLTGQQARNTHRAKQLACLEACKELHRSGALDDHLLPSVEEPSADDTIKVNRDY 2015
            P+A  Q + G   +N+H +KQL CLEACK+LH+ GALDDHLLP VEEPS +D I  ++  
Sbjct: 626  PNAAFQTIIGPGNKNSHLSKQLVCLEACKKLHQMGALDDHLLPYVEEPSENDIIVKSKGS 685

Query: 2016 SSGVGTTKRKELHGTTTARALCGSWGDITDGISLHAYRIDFSCSLADEFYSGFVLLIEAN 2195
            ++G GTTKRKELHGTT   AL G+WGD  DG    AY+IDFSC++ +E YSGFVLLIE+ 
Sbjct: 686  AAGAGTTKRKELHGTTQTCALSGTWGDKIDGAIFQAYKIDFSCNIVNELYSGFVLLIESK 745

Query: 2196 LDDEVAHAEIELFLTDKFVKSSVSPCGQLHLNADQVKYAQLFQEFLFNGIFGKLFIGSRS 2375
            LDD+V + E+EL+L  KFV++SVS CGQ+ L+A+QV  A  F E  FN +FG+LFIGS+S
Sbjct: 746  LDDDVGNIEMELYLISKFVRTSVSSCGQVSLDAEQVMKAMRFHELFFNSLFGRLFIGSKS 805

Query: 2376 SGTPREFLLMKENKXXXXXXXXXXXXPVE-SHIPIRDSLEINWRGINACSSAIEFVKEHY 2552
            SG  REFLL  + K            P+E S+IP  +S  INW GIN+C+S +EF+++  
Sbjct: 806  SGVRREFLLNTQQKSLWSSSNMYLLLPIESSNIPSDESWRINWPGINSCASVVEFLEKR- 864

Query: 2553 SAVEHLPTRAHD--------------EAECKNSKFIFLANTSVLAQNLPEMVVLAIHTGR 2690
                 L T   +              E ECK+   + LAN SV   NL  MVVLAIHTGR
Sbjct: 865  ---SQLSTGNMNDDTGNPSPCSTGLVETECKSISTVHLANNSVHVNNLKNMVVLAIHTGR 921

Query: 2691 IYSVLEVMNEKSAESSFDGEFDAGPSTYSSFREYFDKKYGIVLRYPGQPLLRLKQSHKAH 2870
            IYS+L+V+ + SAES FDG  D   S Y++F EYF+ KYGIVL YPGQPLL LKQSH AH
Sbjct: 922  IYSILDVVIDTSAESPFDGSADVNSSNYTTFAEYFNNKYGIVLMYPGQPLLLLKQSHNAH 981

Query: 2871 NLLARPRNEVSKNEG-GMATEKTLAFVHMPAELLVSIDVSIGVIKSFYLLPSLMHRLESL 3047
            NLL    +E +   G  M  EK    VHMP ELLVSI+V I V+KS YLLPSL+HRLESL
Sbjct: 982  NLLVNFNDEDALQTGQKMLNEKAQTHVHMPPELLVSIEVPITVLKSSYLLPSLIHRLESL 1041

Query: 3048 MLAIQLREEISCGLNNCHISSSLILEALTSLRCCEDFSLERLELLGDSVLKYVVSCTLYL 3227
            MLA QLREEI+       ISSSLILEA+T+LRC E FS+ERLELLGDSVLKY VSC L+L
Sbjct: 1042 MLASQLREEIAF-TTGSQISSSLILEAITTLRCSESFSMERLELLGDSVLKYAVSCHLFL 1100

Query: 3228 KYPKKHEGQLSALRSFAVCNSTLYKLGTNRKLQGYIRDSAFEPRRWVPPGQRSIFPIPCN 3407
            KYPKKHEGQLSA RS+ VCNSTL+KLGT+R LQGYIRD AF+PRRWV PGQRSI P+PC+
Sbjct: 1101 KYPKKHEGQLSARRSWVVCNSTLHKLGTDRSLQGYIRDGAFDPRRWVAPGQRSIRPVPCS 1160

Query: 3408 CGVDTSDVPLESQFVTEDPKTVVGKACDSGHRWMCSKTISDCVEXXXXXXXXXXXXXXXX 3587
            CGVD  +VPL+ +F TED K VVGK+CD GHRWM SKTI+DCVE                
Sbjct: 1161 CGVDALEVPLDGKFQTEDTKIVVGKSCDRGHRWMGSKTIADCVEALIGAYYVGGGLNAAL 1220

Query: 3588 XIMKWLGINAEFDLTLIDKAISNAPLWHHTPESNVLNVLESKLNYCFTTKGLLLEAITHA 3767
             +MKW GI+ E + +L+D+AI+ A L  + P++N + +LESK+ Y F+ KGLLLEAITHA
Sbjct: 1221 HLMKWFGIDVELEPSLVDEAIATASLRTYIPKANEIEILESKIGYEFSVKGLLLEAITHA 1280

Query: 3768 SQQEQGLSYCYQRLEFLGDSVLDLLITWYLFQSHTDIDPGELTDLRSASVNNESFAKASV 3947
            ++QE G+ YCYQRLEFLGDSVLD+LITW+L+QSH DIDPGELTDLRSASVNNESFA+ +V
Sbjct: 1281 TEQELGVGYCYQRLEFLGDSVLDVLITWHLYQSHRDIDPGELTDLRSASVNNESFAQVAV 1340

Query: 3948 KHALQQHLQHCSGLLLEQITEYVKFVLDGHDHP-LLQRVKCPKALGDLVESIAGAVLIDS 4124
            +  LQQHLQHCSGLLL QI EY K++    D P  LQ  K PKALGDLVESIAGA+LID+
Sbjct: 1341 RRNLQQHLQHCSGLLLGQIKEYAKYLSGSDDVPNPLQSTKGPKALGDLVESIAGAILIDT 1400

Query: 4125 RFNLDEVWRIFEPLLSPIVTPEKLELPPFRELNELCSHLGYFIRETSTIEEEIVHIELWL 4304
            + NL+EVWRIF+PLLSPIVTP+KLELPP RELNELC  LGYFI+E  T + E+VH EL L
Sbjct: 1401 KLNLNEVWRIFKPLLSPIVTPDKLELPPLRELNELCDSLGYFIKEKCTNKGELVHAELRL 1460

Query: 4305 QLKDVLLKGEGRDKSKKAAKGQAAFQLLKDLEVRGISHFRHVS--RKKNHEMVFDDSYIQ 4478
            Q+ DVLL GEG  ++KKAAKGQAA QLLK+LE RGIS+ R  S  RK+  ++V   S + 
Sbjct: 1461 QMIDVLLVGEGCGRNKKAAKGQAAAQLLKNLEKRGISYSRSNSKRRKQGADLVGVSSSL- 1519

Query: 4479 DMDISICRQSSGKDLNEPSSKKKKAXXXXXXXXXXXXXAPVVVTINKKKGGPRTSLYTLC 4658
            +M    C QS+ +D +E                       V+ +IN KKGGPR+SLY LC
Sbjct: 1520 NMGGDACGQSNNEDSSE----------------NYDFVFAVIKSINMKKGGPRSSLYELC 1563

Query: 4659 KKQQWPMPTFDSTQQQSRSPVEFGSGSERRIGFNIFVSKITLHIPNFGAIELTGEQRADK 4838
            K+ QWPMP+F+S +Q+SR P+ FG GSERR GFN F+S I+LHIPN G +E  G+ RADK
Sbjct: 1564 KRLQWPMPSFESKEQRSRFPIIFGEGSERREGFNSFISSISLHIPNCGVMECRGDHRADK 1623

Query: 4839 KSSQDSAALILLYELGRRGKCSIED 4913
            KSS DSAAL++L+EL RRGK  I D
Sbjct: 1624 KSSLDSAALVMLHELQRRGKLIIHD 1648


>emb|CBI20740.3| unnamed protein product [Vitis vinifera]
          Length = 1688

 Score = 1922 bits (4979), Expect = 0.0
 Identities = 1016/1669 (60%), Positives = 1217/1669 (72%), Gaps = 43/1669 (2%)
 Frame = +3

Query: 36   SQEPVFKKQNGSHSVKSFDPRSYQKKVYEVARRRNTIAVLDTGAGKTMIAVMLIQEVGMV 215
            S  P     + S S K   PRSYQ KV+EVA+RRNTIAVLDTG GKTMIA+MLI+E+G  
Sbjct: 27   SNPPPSPLPSSSSSSKELSPRSYQWKVFEVAKRRNTIAVLDTGTGKTMIALMLIREIGQA 86

Query: 216  LKERKEKKLIIFLAPTVHLVNQ--------QFQVIKSHTDLNVEEYFGEKGVDVWDSMRW 371
            +K    K  IIFLAPTVHLVNQ        QF+VIK  T   VEEY+G KGVD W +  W
Sbjct: 87   VKADGRKLFIIFLAPTVHLVNQACFFFIFSQFKVIKDSTGFEVEEYYGAKGVDEWSAKSW 146

Query: 372  ETEANENDVLVMTPQILLDALRKAFLSLKLVCLLVFDECHRATGNHPYTKIMKEFYHKYS 551
            E E +E+DVLVMTPQILLDALRKAFLSL+ VCL++ DECHRATGNHPYTKIMKEFYHK  
Sbjct: 147  EKEISEHDVLVMTPQILLDALRKAFLSLETVCLMIVDECHRATGNHPYTKIMKEFYHKSV 206

Query: 552  NKPKIFGMTASPVIRKGVSSAMDCEDQVSTLESILDSKIYTIEDRTELESFVPSPVEEKR 731
            +KPKIFGMTASPVIRKGVSS+MDCE+Q+S LESILD +IYTIEDRTELE F+PS  E  R
Sbjct: 207  DKPKIFGMTASPVIRKGVSSSMDCENQISELESILDCQIYTIEDRTELEVFIPSAKEINR 266

Query: 732  YYNSILFFHEELKEKLGSSRSKFDDLLVNKQGSLPSQYKDTDETFKALRKKLLSYHAKIL 911
            +Y++  F + +LK KL SS SKFD+LL+N QGS  +QYKD D+  KALRK+L + HAKIL
Sbjct: 267  FYDASQFHNLDLKAKLKSSWSKFDNLLLNLQGSPMTQYKDMDDKLKALRKRLSNDHAKIL 326

Query: 912  HCLDGLGFLCAYEAAKVCAETARSNSKDECELYRNSFVLCRNFLEDVLHIFEESLPHDYE 1091
            +CLD LG +CAYEA KVC E   SN+++E E YR S   C+ FL++VL I    LPH   
Sbjct: 327  YCLDDLGLICAYEAVKVCIENV-SNAQEEFEFYRQSSSQCKCFLQEVLGIIGGYLPHGDG 385

Query: 1092 QLFNMGFDHLKAITMGYISPKLYELVQIFQLLGGSRELRCLIFVERIIAAKVIERFMRKV 1271
               N   D LKA+  GYI+PKL+EL+Q+FQ  G +R++ CLIFVERII AKVIERF++K+
Sbjct: 386  NYLNSESDILKAVDKGYITPKLHELLQLFQSFGVARKVLCLIFVERIITAKVIERFIKKI 445

Query: 1272 SSLSHLTVSYLTGGGASVDALTRTMQKKTLESFRCGKVNLLFTTDVLEEGIDVPSCSCVI 1451
              LSH TVSYLTG  +SVDAL    Q++TLESFR GKVNLLF TDV+EEGI VP+CSCVI
Sbjct: 446  IYLSHFTVSYLTGSNSSVDALAPKAQRETLESFRSGKVNLLFATDVVEEGIHVPNCSCVI 505

Query: 1452 RFDLPKTVRSYVQSRGRARQNGSRYVLMLERGNIEQRDMLYDLIRSEHSMTDSALTRDPN 1631
            RFDLPKTVRSYVQSRGRARQ+ S++++MLERGN EQRD L+D+IRSE+SMTD+A  RDP+
Sbjct: 506  RFDLPKTVRSYVQSRGRARQSDSQFIIMLERGNTEQRDQLFDIIRSEYSMTDTATNRDPD 565

Query: 1632 ACISKVCDTEEPDMYVVRSTGASVTADSCVSLIFRYCEKLPGDMYFTPKPKFQMILSGGL 1811
                K    EE D Y V STGASVTADS VSLI RYCEKLPGD YFTPKP F      G+
Sbjct: 566  GYTLKAYTIEEMDSYFVDSTGASVTADSSVSLIHRYCEKLPGDKYFTPKPFFHFTYLEGM 625

Query: 1812 YECELTLPPSAPIQKLTGQQARNTHRAKQLACLEACKELHRSGALDDHLLPSVEEPSADD 1991
            YEC+LTLPP+A  Q + G   +N+H +KQL CLEACK+LH+ GALDDHLLP VEEPS +D
Sbjct: 626  YECKLTLPPNAAFQTIIGPGNKNSHLSKQLVCLEACKKLHQMGALDDHLLPYVEEPSEND 685

Query: 1992 TIKVNRDYSSGVGTTKRKELHGTTTARALCGSWGDITDGISLHAYRIDFSCSLADEFYSG 2171
             I  ++  ++G GTTKRKELHGTT   AL G+WGD  DG    AY+IDFSC++ +E YSG
Sbjct: 686  IIVKSKGSAAGAGTTKRKELHGTTQTCALSGTWGDKIDGAIFQAYKIDFSCNIVNELYSG 745

Query: 2172 FVLLIEANLDDEVAHAEIELFLTDKFVKSSVSPCGQLHLNADQVKYAQLFQEFLFNGIFG 2351
            FVLLIE+ LDD+V + E+EL+L  KFV++SVS CGQ+ L+A+QV  A  F E  FN +FG
Sbjct: 746  FVLLIESKLDDDVGNIEMELYLISKFVRTSVSSCGQVSLDAEQVMKAMRFHELFFNSLFG 805

Query: 2352 KLFIGSRSSGTPREFLLMKENKXXXXXXXXXXXXPVE-SHIPIRDSLEINWRGINACSSA 2528
            +LFIGS+SSG  REFLL  + K            P+E S+IP  +S  INW GIN+C+S 
Sbjct: 806  RLFIGSKSSGVRREFLLNTQQKSLWSSSNMYLLLPIESSNIPSDESWRINWPGINSCASV 865

Query: 2529 IEFVKEHYSAVEHLPTRAHD--------------EAECKNSKFIFLANTSVLAQNLPEMV 2666
            +EF+++       L T   +              E ECK+   + LAN SV   NL  MV
Sbjct: 866  VEFLEKR----SQLSTGNMNDDTGNPSPCSTGLVETECKSISTVHLANNSVHVNNLKNMV 921

Query: 2667 VLAIHTGRIYSVLEVMNEKSAESSFDGEFDAGPSTYSSFREYFDKKYGIVLRYPGQPLLR 2846
            VLAIHTGRIYS+L+V+ + SAES FDG  D   S Y++F EYF+ KYGIVL YPGQPLL 
Sbjct: 922  VLAIHTGRIYSILDVVIDTSAESPFDGSADVNSSNYTTFAEYFNNKYGIVLMYPGQPLLL 981

Query: 2847 LKQSHKAHNLLAR---PRNEVSKNEGGMATEKTLAFVHMPAELLVSIDVSIGVIKSFYLL 3017
            LKQSH AHNLL        E  +    M  EK    VHMP ELLVSI+V I V+KS YLL
Sbjct: 982  LKQSHNAHNLLVNFNDEGGEALQTGQKMLNEKAQTHVHMPPELLVSIEVPITVLKSSYLL 1041

Query: 3018 PSLMHRLESLMLAIQLREEISCGLNNCHISSSLILEALTSLRCCEDFSLERLELLGDSVL 3197
            PSL+HRLESLMLA QLREEI+       ISSSLILEA+T+LRC E FS+ERLELLGDSVL
Sbjct: 1042 PSLIHRLESLMLASQLREEIAF-TTGSQISSSLILEAITTLRCSESFSMERLELLGDSVL 1100

Query: 3198 KYVVSCTLYLKYPKKHEGQLSALRSFAVCNSTLYKLGTNRKLQGYIRDSAFEPRRWVPPG 3377
            KY VSC L+LKYPKKHEGQLSA RS+ VCNSTL+KLGT+R LQGYIRD AF+PRRWV PG
Sbjct: 1101 KYAVSCHLFLKYPKKHEGQLSARRSWVVCNSTLHKLGTDRSLQGYIRDGAFDPRRWVAPG 1160

Query: 3378 QRSIFPIPCNCGVDTSDVPLESQFVTEDPKTVVGKACDSGHRWMCSKTISDCVEXXXXXX 3557
            QRSI P+PC+CGVD  +VPL+ +F TED K VVGK+CD GHRWM SKTI+DCVE      
Sbjct: 1161 QRSIRPVPCSCGVDALEVPLDGKFQTEDTKIVVGKSCDRGHRWMGSKTIADCVEALIGAY 1220

Query: 3558 XXXXXXXXXXXIMKWLGINAEFDLTLIDKAISNAPLWHHTPESNVLNVLESKLNYCFTTK 3737
                       +MKW GI+ E + +L+D+AI+ A L  + P++N + +LESK+ Y F+ K
Sbjct: 1221 YVGGGLNAALHLMKWFGIDVELEPSLVDEAIATASLRTYIPKANEIEILESKIGYEFSVK 1280

Query: 3738 GLLLEAITHASQQEQGLSYCYQRLEFLGDSVLDLLITWYLFQSHTDIDPGELTDLRSASV 3917
            GLLLEAITHA++QE G+ YCYQRLEFLGDSVLD+LITW+L+QSH DIDPGELTDLRSASV
Sbjct: 1281 GLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLITWHLYQSHRDIDPGELTDLRSASV 1340

Query: 3918 NNESFAKASVKHALQQHLQHCSGLLLEQITEYVKFVLDGHDHP-LLQRVKCPKALGDLVE 4094
            NNESFA+ +V+  LQQHLQHCSGLLL QI EY K++    D P  LQ  K PKALGDLVE
Sbjct: 1341 NNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLSGSDDVPNPLQSTKGPKALGDLVE 1400

Query: 4095 SIAGAVLIDSRFNLDEVWRIFEPLLSPIVTPEKLELPPFRELNELCSHLGYFIRETSTIE 4274
            SIAGA+LID++ NL+EVWRIF+PLLSPIVTP+KLELPP RELNELC  LGYFI+E  T +
Sbjct: 1401 SIAGAILIDTKLNLNEVWRIFKPLLSPIVTPDKLELPPLRELNELCDSLGYFIKEKCTNK 1460

Query: 4275 EEIVHIELWLQLKDVLLKGEGRDKSKKAAKGQAAFQLLKDLEVRGISHFRHVS--RKKNH 4448
             E+VH EL LQ+ DVLL GEG  ++KKAAKGQAA QLLK+LE RGIS+ R  S  RK+  
Sbjct: 1461 GELVHAELRLQMIDVLLVGEGCGRNKKAAKGQAAAQLLKNLEKRGISYSRSNSKRRKQGA 1520

Query: 4449 EMVFDDSYIQDMDISICRQSSGKDLNEPSSKKKK--------------AXXXXXXXXXXX 4586
            ++V   S + +M    C QS+ +D +E     KK              A           
Sbjct: 1521 DLVGVSSSL-NMGGDACGQSNNEDSSELIKFHKKQKTTGMQLCTRTSIANNCLENACKPK 1579

Query: 4587 XXAPVVVTINKKKGGPRTSLYTLCKKQQWPMPTFDSTQQQSRSPVEFGSGSERRIGFNIF 4766
               PV+ +IN KKGGPR+SLY LCK+ QWPMP+F+S +Q+SR P+ FG GSERR GFN F
Sbjct: 1580 LDTPVIKSINMKKGGPRSSLYELCKRLQWPMPSFESKEQRSRFPIIFGEGSERREGFNSF 1639

Query: 4767 VSKITLHIPNFGAIELTGEQRADKKSSQDSAALILLYELGRRGKCSIED 4913
            +S I+LHIPN G +E  G+ RADKKSS DSAAL++L+EL RRGK  I D
Sbjct: 1640 ISSISLHIPNCGVMECRGDHRADKKSSLDSAALVMLHELQRRGKLIIHD 1688


>gb|AEC12444.1| ribonuclease III family protein DCL3 [Gossypium hirsutum]
          Length = 1655

 Score = 1773 bits (4593), Expect = 0.0
 Identities = 927/1626 (57%), Positives = 1162/1626 (71%), Gaps = 22/1626 (1%)
 Frame = +3

Query: 102  YQKKVYEVARRRNTIAVLDTGAGKTMIAVMLIQEVGMVLKERKEKKLIIFLAPTVHLVNQ 281
            YQ +VYEVA+RRN IA+LDTG GKTMIAVMLI++ G  ++  + KKLIIFLAPTVHLVNQ
Sbjct: 48   YQLQVYEVAKRRNIIALLDTGVGKTMIAVMLIKDFGQAIESTESKKLIIFLAPTVHLVNQ 107

Query: 282  QFQVIKSHTDLNVEEYFGEKGVDVWDSMRWETEANENDVLVMTPQILLDALRKAFLSLKL 461
               +I+   +L VE+Y+G KGVD W    WE E  E+DVLVMTPQILLDALRKAFLSL +
Sbjct: 108  VCFLIRESLNLEVEQYYGAKGVDEWTLDCWEKETKEHDVLVMTPQILLDALRKAFLSLDM 167

Query: 462  VCLLVFDECHRATGNHPYTKIMKEFYHKYSNKPKIFGMTASPVIRKGVSSAMDCEDQVST 641
            V L++ DECHRATGNHPY KIMKEFYHK +NKPKIFGMTASPV+ KGV S+ +C+ Q+S 
Sbjct: 168  VSLMIIDECHRATGNHPYAKIMKEFYHKSNNKPKIFGMTASPVVSKGVLSSNNCDGQMSE 227

Query: 642  LESILDSKIYTIEDRTELESFVPSPVEEKRYYNSILFFHEELKEKLGSSRSKFDDLLVNK 821
            LE +LDS IYTIEDRTE+E+ VPS  E  R+++   F   +LK K+ +S  K D  L N 
Sbjct: 228  LECVLDSLIYTIEDRTEMEACVPSAKESCRFFDPAQFSSLDLKAKVEASWLKTDGSLSNL 287

Query: 822  QGSLPSQYKDTDETFKALRKKLLSYHAKILHCLDGLGFLCAYEAAKVCAETARSNSKDEC 1001
            Q SL + +KD D+  K LRK+L + HAK+LHCLD LG +CAYEA  +C E    ++ +E 
Sbjct: 288  QSSLQTSHKDMDDKLKNLRKRLSNDHAKVLHCLDNLGLICAYEAVNICLENI-LDTTEES 346

Query: 1002 ELYRNSFVLCRNFLEDVLHIFEESLPHDYEQLFNMGFDHLKAITMGYISPKLYELVQIFQ 1181
            + YR S +  +NFLE+V     ESLP   +   N GFD+LKA+ +GYISPKL+EL+Q+FQ
Sbjct: 347  KAYRESVLQYKNFLEEVQCRIGESLPLGDKNFLNSGFDYLKAVDLGYISPKLHELLQLFQ 406

Query: 1182 LLGGSRELRCLIFVERIIAAKVIERFMRKVSSLSHLTVSYLTGGGASVDALTRTMQKKTL 1361
              G +R++ CLIFVERII AKVIERF +KVS LSH  VSY+TG   SVD+L   +QK+TL
Sbjct: 407  SFGETRQVLCLIFVERIITAKVIERFAKKVSCLSHFMVSYMTGSNTSVDSLAPKIQKETL 466

Query: 1362 ESFRCGKVNLLFTTDVLEEGIDVPSCSCVIRFDLPKTVRSYVQSRGRARQNGSRYVLMLE 1541
            ESFR GKVNLLFTTDV+EEGI VP+C  VIRFDLPKTVRSYVQSRGRARQN S +++MLE
Sbjct: 467  ESFRSGKVNLLFTTDVVEEGIHVPNCCYVIRFDLPKTVRSYVQSRGRARQNNSEFIMMLE 526

Query: 1542 RGNIEQRDMLYDLIRSEHSMTDSALTRDPNA--CISKVCDTEEPDMYVVRSTGASVTADS 1715
            RGN++QR+ LYD+IRSE+SMT+SA+ RDP++  C+ K    EE ++++V +TGASVTADS
Sbjct: 527  RGNVKQRNQLYDIIRSEYSMTNSAIKRDPDSDPCLLKDHTFEETNVFIVDATGASVTADS 586

Query: 1716 CVSLIFRYCEKLPGDMYFTPKPKFQMILSGGLYECELTLPPSAPIQKLTGQQARNTHRAK 1895
             VSLI +YC KLPGD Y+TPKP FQ   S GLY+C+LTLP +A +Q + G  +RN+H AK
Sbjct: 587  AVSLIHKYCGKLPGDKYYTPKPNFQFTSSEGLYKCKLTLPVNAAVQTIVGPPSRNSHLAK 646

Query: 1896 QLACLEACKELHRSGALDDHLLPSVEEPSADDTIKVNRD----YSSGVGTTKRKELHGTT 2063
            QL CLEACK+LH+ GALDDHL PS+EEPS +  I   +D      +G GTTKRKELHGTT
Sbjct: 647  QLVCLEACKQLHQMGALDDHLTPSIEEPSENACISKGKDSGAGAGAGAGTTKRKELHGTT 706

Query: 2064 TARALCGSWGDITDGISLHAYRIDFSCSLADEFYSGFVLLIEANLDDEVAHAEIELFLTD 2243
              +ALCGSWG+ +D     AY+ DF C++    YSGFVLLIE+ L D+V + E++LFL  
Sbjct: 707  CIQALCGSWGEKSDDAVFFAYKFDFKCNIITVVYSGFVLLIESKLADDVGNTEMDLFLIG 766

Query: 2244 KFVKSSVSPCGQLHLNADQVKYAQLFQEFLFNGIFGKLFIGSRSSGTPREFLLMKENKXX 2423
            K VK+SVS CGQ+ LNA+Q+  A+ FQEF FNG+FGKLF+GS+SSG PREFLL  +    
Sbjct: 767  KMVKASVSSCGQVRLNAEQMMKAKRFQEFFFNGLFGKLFVGSKSSGAPREFLLRDKTSSL 826

Query: 2424 XXXXXXXXXXPVESHIPIRDSLEINWRGINACSSAIEFVKEHY----------SAVEHLP 2573
                      P+E +    D L I+W GI AC+ A EF+ ++            +   L 
Sbjct: 827  WSPSRMYLLLPLEDN--STDELRIHWPGITACTLAAEFLNKNSLLGTEQSDDGGSNPSLN 884

Query: 2574 TRAHDEAECKNSKFIFLANTSVLAQNLPEMVVLAIHTGRIYSVLEVMNEKSAESSFDGEF 2753
            +      +CK +  I  AN+SV A +L   VVLAIHTGRIY ++E +++K+AESSF    
Sbjct: 885  STGSPVTDCKETNIIRFANSSVDANSLRNTVVLAIHTGRIYCIIEAVSDKTAESSFAETV 944

Query: 2754 DAGPSTYSSFREYFDKKYGIVLRYPGQPLLRLKQSHKAHNLLARPRNE---VSKNEGGMA 2924
            D   S +++F EYF KKY IVL++PGQPL+ LKQSH  HNLL    +E      ++ G+ 
Sbjct: 945  DTVSSEFANFYEYFYKKYNIVLKHPGQPLMLLKQSHNPHNLLVNFNDEGVSAKASQAGVV 1004

Query: 2925 TEKTLAFVHMPAELLVSIDVSIGVIKSFYLLPSLMHRLESLMLAIQLREEISCGLNNCHI 3104
             EK    VHMP ELL+ +DV + V+KS YLLPSLMHRLESLMLA QLREEI+   +N  I
Sbjct: 1005 NEKPRFHVHMPPELLLVLDVPVSVLKSLYLLPSLMHRLESLMLANQLREEINFCSSNIDI 1064

Query: 3105 SSSLILEALTSLRCCEDFSLERLELLGDSVLKYVVSCTLYLKYPKKHEGQLSALRSFAVC 3284
             SS+ILEALT+LRCCE FS+ERLELLGDSVLKY VSC L+L+YP KHEGQLSA RS AVC
Sbjct: 1065 PSSMILEALTTLRCCESFSMERLELLGDSVLKYAVSCHLFLRYPNKHEGQLSARRSLAVC 1124

Query: 3285 NSTLYKLGTNRKLQGYIRDSAFEPRRWVPPGQRSIFPIPCNCGVDTSDVPLESQFVTEDP 3464
            NSTL+KLGT+ K+QGYIRDSAF+PRRWV PGQR + P+PC CGVD+ +VPL+ +F TEDP
Sbjct: 1125 NSTLHKLGTDHKIQGYIRDSAFDPRRWVAPGQRVLRPVPCKCGVDSLEVPLDKKFQTEDP 1184

Query: 3465 KTVVGKACDSGHRWMCSKTISDCVEXXXXXXXXXXXXXXXXXIMKWLGINAEFDLTLIDK 3644
            K  VGK+CD GHRW+CSKTISDCVE                 +MKWLGI+AE D  ++ +
Sbjct: 1185 KVKVGKSCDRGHRWLCSKTISDCVEALIGAYYLSGGLVAALHVMKWLGIDAELDPLVVAE 1244

Query: 3645 AISNAPLWHHTPESNVLNVLESKLNYCFTTKGLLLEAITHASQQEQGLSYCYQRLEFLGD 3824
             I+ A L  + P   + +++ESK+ Y F+ K  L EA+TH S  E   SYCYQRLEFLGD
Sbjct: 1245 VINQASLRTYVPNYEI-HMIESKVGYNFSVKFFLQEALTHESLHE---SYCYQRLEFLGD 1300

Query: 3825 SVLDLLITWYLFQSHTDIDPGELTDLRSASVNNESFAKASVKHALQQHLQHCSGLLLEQI 4004
            SVLDLLIT YL+  HT+IDPGELTDLRSASVNNE+FA+ +V+H L +HLQHCS LL  QI
Sbjct: 1301 SVLDLLITQYLYNHHTNIDPGELTDLRSASVNNENFAQVAVRHDLHKHLQHCSTLLSNQI 1360

Query: 4005 TEYVK-FVLDGHDHPLLQRVKCPKALGDLVESIAGAVLIDSRFNLDEVWRIFEPLLSPIV 4181
            +EYV+ F    +   L   +K PKALGDLVESI GA+LID+  NLD+VWRI EPLLSPIV
Sbjct: 1361 SEYVQSFTESDNTTRLDPSIKGPKALGDLVESIVGAILIDTNLNLDKVWRIVEPLLSPIV 1420

Query: 4182 TPEKLELPPFRELNELCSHLGYFIRETSTIEEEIVHIELWLQLKDVLLKGEGRDKSKKAA 4361
            TP+KLELPPFRELNELC  LGYFI+E    + E+VH EL LQL   LL GEG D+S+K A
Sbjct: 1421 TPDKLELPPFRELNELCDSLGYFIKEKCKNKGEVVHAELLLQLDHDLLVGEGFDRSRKVA 1480

Query: 4362 KGQAAFQLLKDLEVRGISHFRHVSRKKNHEMVFDDSYIQD--MDISICRQSSGKDLNEPS 4535
            KG+AA  LLKDLE RGIS      +K+ H+ V     ++D  ++ +I ++    ++    
Sbjct: 1481 KGKAASCLLKDLENRGISR-----KKRKHDCVDSSQTMEDDSLEPTIPKRQRRAEIQLLD 1535

Query: 4536 SKKKKAXXXXXXXXXXXXXAPVVVTINKKKGGPRTSLYTLCKKQQWPMPTFDSTQQQSRS 4715
              KK                PV+VT+  KKGGPRT+L+ LCKK  WPMP+  +T+ +S +
Sbjct: 1536 ESKKAC--------SATPATPVIVTVKTKKGGPRTTLFELCKKLLWPMPSIKATEHKSSA 1587

Query: 4716 PVEFGSGSERRIGFNIFVSKITLHIPNFGAIELTGEQRADKKSSQDSAALILLYELGRRG 4895
            P+E G G ER+ GF  FVSKI L++P +  IE TG+ +ADKKSS DSAAL +LYEL +RG
Sbjct: 1588 PMEIGEGPERKKGFISFVSKIILNVPGYDIIECTGDAKADKKSSSDSAALFMLYELEQRG 1647

Query: 4896 KCSIED 4913
            K  IE+
Sbjct: 1648 KLIIEE 1653


>ref|XP_002516160.1| Ribonuclease III, putative [Ricinus communis]
            gi|223544646|gb|EEF46162.1| Ribonuclease III, putative
            [Ricinus communis]
          Length = 1660

 Score = 1771 bits (4586), Expect = 0.0
 Identities = 916/1631 (56%), Positives = 1158/1631 (70%), Gaps = 5/1631 (0%)
 Frame = +3

Query: 36   SQEPVFKKQNGSHSVKSFDPRSYQKKVYEVARRRNTIAVLDTGAGKTMIAVMLIQEVGMV 215
            SQ+P       + + K F+PRSYQ KV+EVA +RNTIAVL+TGAGKTMIAVMLI+E+G  
Sbjct: 43   SQKPDSTITTSTTTGKGFNPRSYQVKVFEVAMKRNTIAVLETGAGKTMIAVMLIREIGQA 102

Query: 216  LKERKEKKLIIFLAPTVHLVNQQFQVIKSHTDLNVEEYFGEKGVDVWDSMRWETEANEND 395
            +K    KKLIIFLAPTVHLVNQQ++VIK +T+  V EY+G KG+D W    WE E NE+D
Sbjct: 103  IKSNDFKKLIIFLAPTVHLVNQQYEVIKDNTNFKVGEYYGAKGIDGWSMKVWEKEINEHD 162

Query: 396  VLVMTPQILLDALRKAFLSLKLVCLLVFDECHRATGNHPYTKIMKEFYHKYSNKPKIFGM 575
            VLVMTPQILLDALRKAFL+L++V L++ DECHR TGNHP TKIMKEFYHK SNKPKIFGM
Sbjct: 163  VLVMTPQILLDALRKAFLNLEMVSLMIIDECHRTTGNHPCTKIMKEFYHKLSNKPKIFGM 222

Query: 576  TASPVIRKGVSSAMDCEDQVSTLESILDSKIYTIEDRTELESFVPSPVEEKRYYNSILFF 755
            TASPV++KGVSSA+DCEDQ+S LE+ILDS+IYTIEDRTE++  VPS  E  ++Y+    +
Sbjct: 223  TASPVVQKGVSSAVDCEDQISELETILDSQIYTIEDRTEMDVHVPSAREICKFYDIAQLY 282

Query: 756  HEELKEKLGSSRSKFDDLLVNKQGSLPSQYKDTDETFKALRKKLLSYHAKILHCLDGLGF 935
              ++K K+ +S SKFD  L++ QGS+ S YKD D+ +K L+++L + ++KIL+CL+ LG 
Sbjct: 283  SSDIKSKIEASWSKFDASLLSLQGSIQSSYKDADDRYKTLQQRLYNDYSKILNCLEELGL 342

Query: 936  LCAYEAAKVCAETARSNSKDECELYRNSFVLCRNFLEDVLHIFEESLPHDYEQLFNMGFD 1115
            +CAYEA K+C E + S +    ++YR   + C+ FLE+VL I    LPH    L ++GFD
Sbjct: 343  ICAYEAVKICLENSPSTAA--FDIYREISLKCKYFLEEVLSIIGTYLPHGDSYLLDLGFD 400

Query: 1116 HLKAITMGYISPKLYELVQIFQLLGGSRELRCLIFVERIIAAKVIERFMRKVSSLSHLTV 1295
            +LKA+ + YISPKLYEL+Q+F   G  +E+ CLIFV+RII AKVIERF++KV++L H TV
Sbjct: 401  YLKAVRLSYISPKLYELLQVFLSFGVDKEVLCLIFVDRIITAKVIERFVKKVAALVHFTV 460

Query: 1296 SYLTGGGASVDALTRTMQKKTLESFRCGKVNLLFTTDVLEEGIDVPSCSCVIRFDLPKTV 1475
            SY+TG   SVDALT   Q++T+ +FR GKVNLLF+TDVL EGI VP+CSCVI FDLPKTV
Sbjct: 461  SYVTGSNTSVDALTPKTQRETMYAFRSGKVNLLFSTDVLREGIHVPNCSCVICFDLPKTV 520

Query: 1476 RSYVQSRGRARQNGSRYVLMLERGNIEQRDMLYDLIRSEHSMTDSALTRDPNACISKVCD 1655
              Y QSRGRARQN S+Y++ML+RGN++QRD L+D IRSE  +T++A+ RDP+    K C 
Sbjct: 521  CCYAQSRGRARQNDSQYIIMLQRGNVKQRDQLFDFIRSEWLVTNTAINRDPDVWTLKTCV 580

Query: 1656 TEEPDMYVVRSTGASVTADSCVSLIFRYCEKLPGDMYFTPKPKFQMILSGGLYECELTLP 1835
             EE + Y+V  TGASVTADS V+LI RYC KLP D YFTP+P F+       ++C++ LP
Sbjct: 581  PEETEAYIVDVTGASVTADSSVTLIQRYCSKLPSDRYFTPRPTFEFECFEQSFQCKMMLP 640

Query: 1836 PSAPIQKLTGQQARNTHRAKQLACLEACKELHRSGALDDHLLPSVEEPSADDTIKVNRDY 2015
             SA  Q + G   R+   AKQLACLEACK+LH+ GALDDHLLPSVEEP+ DD     +  
Sbjct: 641  ASAAFQTIVGPVCRSQQLAKQLACLEACKQLHQMGALDDHLLPSVEEPTEDDHTVRRKGS 700

Query: 2016 SSGVGTTKRKELHGTTTARALCGSWGDITDGISLHAYRIDFSCSLADEFYSGFVLLIEAN 2195
             +G GTTKRKELHGTT   AL GSWG+  DG + HAY+ +FSCS+  E YSG++LLIE+ 
Sbjct: 701  LAGAGTTKRKELHGTTPIHALSGSWGENLDGATFHAYKFEFSCSIVSEKYSGYILLIESK 760

Query: 2196 LDDEVAHAEIELFLTDKFVKSSVSPCGQLHLNADQVKYAQLFQEFLFNGIFGKLFIGSRS 2375
            LDD+V + E++LFL  K V++SVS CGQ+HL+A+Q+  A+ F E  FN +FGKLF GS+S
Sbjct: 761  LDDDVGNIELDLFLVRKTVRASVSSCGQVHLDAEQMMKAKCFHELFFNALFGKLFSGSKS 820

Query: 2376 SGTPREFLLMKENKXXXXXXXXXXXXPVESHIPIRD-SLEINWRGINACSSAIEFVKEH- 2549
            S +PREFLL KE              P+E+     D S +INWRG+N CS+ +EF+K++ 
Sbjct: 821  SRSPREFLLQKETSLLWILSNMYLLLPLEAFSASSDESWKINWRGVNGCSNVVEFLKKNC 880

Query: 2550 YSAVEHLPTR--AHDEAECKNSKFIFLANTSVLAQNLPEMVVLAIHTGRIYSVLEVMNEK 2723
            +   EH           EC     +  AN SV  + + +MVVLAIHTG+IYSV+EV+ + 
Sbjct: 881  FLGAEHYNGERVRSSVTECSGGNAVHFANISVDVERVKDMVVLAIHTGKIYSVVEVVGDA 940

Query: 2724 SAESSFDGEFDAGPSTYSSFREYFDKKYGIVLRYPGQPLLRLKQSHKAHNLLARPRNEVS 2903
            SAES F+      PS +S+F EYF+KKYGIVL  P QPLL LKQSHK HNLL  P  +  
Sbjct: 941  SAESPFEQNVGGAPSKFSTFSEYFNKKYGIVLLRPRQPLLLLKQSHKPHNLLNPPDEDTL 1000

Query: 2904 KNEGGMATEKTLAFVHMPAELLVSIDVSIGVIKSFYLLPSLMHRLESLMLAIQLREEISC 3083
            K+  G+   K   F  MP ELLVSIDV I  +KS YLLPSLM+RLESLMLA QLR+EI+C
Sbjct: 1001 KD--GLVVAKQRQFARMPPELLVSIDVPIQTLKSSYLLPSLMYRLESLMLASQLRQEIAC 1058

Query: 3084 GLNNCHISSSLILEALTSLRCCEDFSLERLELLGDSVLKYVVSCTLYLKYPKKHEGQLSA 3263
             ++N HI S LILEA+T+ R CE  S+ERLELLGDSVLKY VSC L+L+YP KHEGQLSA
Sbjct: 1059 QVSNFHIPSLLILEAITTPRSCEKVSMERLELLGDSVLKYSVSCDLFLRYPTKHEGQLSA 1118

Query: 3264 LRSFAVCNSTLYKLGTNRKLQGYIRDSAFEPRRWVPPGQRSIFPIPCNCGVDTSDVPLES 3443
             R+ AVCNSTL++LG   KLQGYIRDSAF PR WV PGQ+  F + C CGVDT +VPL++
Sbjct: 1119 QRTRAVCNSTLHQLGIGCKLQGYIRDSAFIPRYWVAPGQQPAFYVSCTCGVDTLEVPLDA 1178

Query: 3444 QFVTEDPKTVVGKACDSGHRWMCSKTISDCVEXXXXXXXXXXXXXXXXXIMKWLGINAEF 3623
            +F TEDPK  +   C  GHRWMCSKTISDCVE                 +M+WLG++ EF
Sbjct: 1179 KFQTEDPKVQIAICCSKGHRWMCSKTISDCVEAVIGAYYVSGGLMAALHVMQWLGMDVEF 1238

Query: 3624 DLTLIDKAISNAPLWHHTPESNVLNVLESKLNYCFTTKGLLLEAITHASQQEQGLSYCYQ 3803
            D +L+DK I  A +  +TP+ + +  +ESKL Y F+ K LL EA+THAS QEQG+ YCYQ
Sbjct: 1239 DPSLVDKIIKTASVRSYTPKEDEIKGIESKLGYTFSVKFLLQEAMTHASMQEQGIGYCYQ 1298

Query: 3804 RLEFLGDSVLDLLITWYLFQSHTDIDPGELTDLRSASVNNESFAKASVKHALQQHLQHCS 3983
            RLEFLGDSVLDLLITW+L+Q+HT +DPGELTDLRSA V+NE+FA+  V+  L +HLQHCS
Sbjct: 1299 RLEFLGDSVLDLLITWHLYQNHTSMDPGELTDLRSACVSNENFAQVVVRRDLYKHLQHCS 1358

Query: 3984 GLLLEQITEYVKFVLDGHDHPLLQRVKCPKALGDLVESIAGAVLIDSRFNLDEVWRIFEP 4163
             LLL QI EY++   +  +       K PKALGDL+ESIAGA+LID++ NLDEVWRIF P
Sbjct: 1359 TLLLSQIKEYLESFHESDEVAKATGPKGPKALGDLLESIAGAMLIDAKLNLDEVWRIFMP 1418

Query: 4164 LLSPIVTPEKLELPPFRELNELCSHLGYFIRETSTIEEEIVHIELWLQLKDVLLKGEGRD 4343
            LLSP+ TP+ LELPP REL +LC+ LGYFI+E      +IVH EL LQL DVLL G G D
Sbjct: 1419 LLSPLATPQNLELPPLRELMQLCNSLGYFIKEKCINNNDIVHAELRLQLNDVLLVGNGCD 1478

Query: 4344 KSKKAAKGQAAFQLLKDLEVRGISH-FRHVSRKKNHEMVFDDSYIQDMDISICRQSSGKD 4520
            +S+KAAKG+AA  LLK LE RGI++ + H  R+K      D +++ D           KD
Sbjct: 1479 RSRKAAKGKAATHLLKKLENRGITYSWGHSKRRKQ-----DSNHVVDSSPLDITNDKAKD 1533

Query: 4521 LNEPSSKKKKAXXXXXXXXXXXXXAPVVVTINKKKGGPRTSLYTLCKKQQWPMPTFDSTQ 4700
              +P   KK               A ++  IN KKGGPRT L+ LCKK QW  PT+ ST+
Sbjct: 1534 HKKP---KKLENQSPAGSGGDPSFAGIIEAINMKKGGPRTDLFELCKKVQWTTPTYSSTE 1590

Query: 4701 QQSRSPVEFGSGSERRIGFNIFVSKITLHIPNFGAIELTGEQRADKKSSQDSAALILLYE 4880
             +S +P+ F  G ER   +N FVS ITL+IP +G IE TG+ R DKKSS D+AAL +LYE
Sbjct: 1591 NKSSTPILFDEGIER---YNSFVSTITLNIPFYGTIECTGDPRPDKKSSCDTAALAMLYE 1647

Query: 4881 LGRRGKCSIED 4913
            L ++G   I D
Sbjct: 1648 LQKQGLLIIGD 1658


>ref|XP_004158269.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog
            3a-like [Cucumis sativus]
          Length = 1639

 Score = 1736 bits (4497), Expect = 0.0
 Identities = 906/1639 (55%), Positives = 1162/1639 (70%), Gaps = 17/1639 (1%)
 Frame = +3

Query: 48   VFKKQNGSHSVKSFDPRSYQKKVYEVARRRNTIAVLDTGAGKTMIAVMLIQEVGMVLKER 227
            V   Q+  +  + F PR YQ +V+EV  RRNTIAVL TG+GKTMIAVMLI+E+G  +K  
Sbjct: 24   VASDQSNFNVAEGFIPRRYQMEVFEVGMRRNTIAVLGTGSGKTMIAVMLIKEIGKAMKSS 83

Query: 228  KEKKLIIFLAPTVHLVNQQFQVIKSHTDLNVEEYFGEKGVDVWDSMRWETEANENDVLVM 407
             +KKLIIFLAPTVHLV+QQF VIK HTD  V EY+G  GVD W+   WE E +E DVLVM
Sbjct: 84   SDKKLIIFLAPTVHLVHQQFNVIKDHTDFEVAEYYGAMGVDDWNMNCWEKETSERDVLVM 143

Query: 408  TPQILLDALRKAFLSLKLVCLLVFDECHRATGNHPYTKIMKEFYHKYSNKPKIFGMTASP 587
            TPQILLDALRKA+  L  +CL++ DECHRATGNHPYTKIMKEFYHK  +KPK FGMTASP
Sbjct: 144  TPQILLDALRKAYFRLGTICLMIIDECHRATGNHPYTKIMKEFYHKSDSKPKXFGMTASP 203

Query: 588  VIRKGVSSAMDCEDQVSTLESILDSKIYTIEDRTELESFVPSPVEEKRYYNSILFFHEEL 767
            VIRKGVSS++DCE Q++ LESILD+++Y IED+ E+E +VPS  E   +Y   +    EL
Sbjct: 204  VIRKGVSSSVDCECQIADLESILDAQVYAIEDKKEVEIYVPSAKEICIFYEPAMPQTMEL 263

Query: 768  KEKLGSSRSKFDDLLVNKQGSLPSQYKDTDETFKALRKKLLSYHAKILHCLDGLGFLCAY 947
            K K+ +   KFD  L N Q ++   YKD D   KAL+K+L S H KI +CLD LG +CAY
Sbjct: 264  KAKIEALWFKFDASLSNSQEAMQGHYKDVDSKLKALKKRLSSDHLKITYCLDELGIMCAY 323

Query: 948  EAAKVCAETARSNSKDECELYRNSFVLCRNFLEDVLHIFEESLPHDYEQLFNMGFDHLKA 1127
            EA KV  E   S   +E ++YR SF+  ++FLE+ L +  ESL  + E +  +GFD  KA
Sbjct: 324  EAIKVLFENV-SVPNEESDVYRESFLQYKHFLEEALLVIGESLSLENENVPTLGFDLWKA 382

Query: 1128 ITMGYISPKLYELVQIFQLLGGSRELRCLIFVERIIAAKVIERFMRKVSSLSHLTVSYLT 1307
            + +GYISPKL+EL+Q+F+  G SR++ CLIFVERIIAA VIER ++KV +LSH TVSY+T
Sbjct: 383  VELGYISPKLFELLQLFESFGVSRQVLCLIFVERIIAANVIERIVKKVENLSHFTVSYVT 442

Query: 1308 GGGASVDALTRTMQKKTLESFRCGKVNLLFTTDVLEEGIDVPSCSCVIRFDLPKTVRSYV 1487
            G  ASV AL   +QK+TLE F  GK+NLLF+TDV+EEG+ VP+CS V+RFDLPKTVRSYV
Sbjct: 443  GCDASVGALAPKVQKETLELFCHGKLNLLFSTDVVEEGLHVPNCSFVVRFDLPKTVRSYV 502

Query: 1488 QSRGRARQNGSRYVLMLERGNIEQRDMLYDLIRSEHSMTDSALTRDPNACISKVCDTEEP 1667
            QSRGRARQN S+Y+L+LERGN++QR +L+D+IRS+ SMTD+A++RD +AC+ K     E 
Sbjct: 503  QSRGRARQNNSQYILLLERGNLKQRALLFDVIRSDRSMTDAAMSRDLDACVLKPFSLMET 562

Query: 1668 DMYVVRSTGASVTADSCVSLIFRYCEKLPGDMYFTPKPKFQMILSGGLYECELTLPPSAP 1847
            D Y+V +TGASVTADS V L+++YC+KLPGD YF+PKP FQ+    G YEC+LTLPP+A 
Sbjct: 563  DCYIVEATGASVTADSSVGLVYQYCKKLPGDKYFSPKPIFQLSYGEGSYECQLTLPPTAA 622

Query: 1848 IQKLTGQQARNTHRAKQLACLEACKELHRSGALDDHLLPSVEEPSADDTIKVNRDYSSGV 2027
            +Q + G   RN++ +KQL CLEACK+LH+ GAL+DHLLPSVEE S  D    +   +S  
Sbjct: 623  LQTIVGPSTRNSNLSKQLVCLEACKKLHQMGALNDHLLPSVEEISESDMGLKSNASTSRA 682

Query: 2028 GTTKRKELHGTTTARALCGSWGDITDGISLHAYRIDFSCSLADEFYSGFVLLIEANLDDE 2207
            G+TKRKELHG T  RAL G+W +  +G +  AY+ DFSCS+  E YSGFVLLIE+ LDD+
Sbjct: 683  GSTKRKELHGRTAIRALSGTWEEQVEGTTFQAYKFDFSCSVIYEVYSGFVLLIESKLDDD 742

Query: 2208 VAHAEIELFLTDKFVKSSVSPCGQLHLNADQVKYAQLFQEFLFNGIFGKLFIGSRSSGTP 2387
            V++ E+EL+L  K VK+SVS  G++HL+A+Q+  A+ FQE  FNG+FG+LFIGS+++G  
Sbjct: 743  VSNFELELYLLSKMVKASVSFGGEVHLDAEQITKAKCFQELFFNGLFGRLFIGSKTTGKK 802

Query: 2388 REFLLMKENKXXXXXXXXXXXXPVESHIP---IRDSLEINWRGINACSSAIEFVKEHYSA 2558
            R+FLL K+              PV+  +P     D  +I+WR I++C S +EF+K++ S 
Sbjct: 803  RDFLLQKDTNPLWISSNMYLLLPVD--LPDDSTHDLWKIHWRAIDSCVSVVEFLKKNSSL 860

Query: 2559 -----------VEHLPTRAHDEAECKNS-KFIFLANTSVLAQNLPEMVVLAIHTGRIYSV 2702
                        +  P+R +      N+   I  AN  +   +L + VVLAIHTGRIYS+
Sbjct: 861  DAERNYGAGAISDSSPSRNNSTETGSNAASVIHFANCVLDVHSLKDRVVLAIHTGRIYSI 920

Query: 2703 LEVMNEKSAESSFDGEFDAGPSTYSSFREYFDKKYGIVLRYPGQPLLRLKQSHKAHNLLA 2882
            +EV++  SAES FDG  D GP  Y +F +YF+K+YGI L +P QPLLRLKQSH  HNLL 
Sbjct: 921  VEVVSNTSAESPFDGNSDKGPPDYITFADYFNKRYGISLSFPKQPLLRLKQSHNPHNLLV 980

Query: 2883 RPRNE-VSKNEGGMATEKTLAFVHMPAELLVSIDVSIGVIKSFYLLPSLMHRLESLMLAI 3059
              ++E   K   G A ++    VHMP EL++S+DV  GV+KS YLLPSL+HR ESLMLA 
Sbjct: 981  NFKDEGFDKLPSGPAFKRPQMHVHMPPELVLSMDVPKGVLKSSYLLPSLIHRFESLMLAS 1040

Query: 3060 QLREEISCGLNNCHISSSLILEALTSLRCCEDFSLERLELLGDSVLKYVVSCTLYLKYPK 3239
            QLR+EI+   N+  ISSSLILEALT+L  CE+FSLERLELLGDSVLKY VSC L+LK+P+
Sbjct: 1041 QLRKEINYHSNSLGISSSLILEALTTLGSCENFSLERLELLGDSVLKYAVSCHLFLKFPE 1100

Query: 3240 KHEGQLSALRSFAVCNSTLYKLGTNRKLQGYIRDSAFEPRRWVPPGQRSIFPIPCNCGVD 3419
            KHEGQLS+ R   +CN+TL+ LGT   LQGYIRDSAF+PRRWV PGQ +  P+PC CGVD
Sbjct: 1101 KHEGQLSSRRQQVICNATLHALGTKCGLQGYIRDSAFDPRRWVAPGQCTNRPVPCKCGVD 1160

Query: 3420 TSDVPLESQFVTEDPKTVVGKACDSGHRWMCSKTISDCVEXXXXXXXXXXXXXXXXXIMK 3599
            T +VPL  +F TEDPK V+GK CD GHRW+ SKTI+DC E                 +MK
Sbjct: 1161 TVEVPLHDKFCTEDPKVVLGKCCDKGHRWVVSKTIADCAEALIGAYYVDGGIIAALHVMK 1220

Query: 3600 WLGINAEFDLTLIDKAISNAPLWHHTPESNVLNVLESKLNYCFTTKGLLLEAITHASQQE 3779
            WLGI+   D+ L+  AI++A L         +  LESK+ Y F  KGLLLEA+TH S QE
Sbjct: 1221 WLGIDVNLDVALVVDAITSASLRSCPLGDTEIATLESKIGYDFAVKGLLLEAVTHTSDQE 1280

Query: 3780 QGLSYCYQRLEFLGDSVLDLLITWYLFQSHTDIDPGELTDLRSASVNNESFAKASVKHAL 3959
             G++YCYQRLEFLGDSVLDLLITW+ +Q+++DIDPGELTDLRSASVNNE+FA+ +V+  L
Sbjct: 1281 IGVNYCYQRLEFLGDSVLDLLITWHYYQNYSDIDPGELTDLRSASVNNENFAQVAVRRNL 1340

Query: 3960 QQHLQHCSGLLLEQITEYVKFVLDGHDHPL-LQRVKCPKALGDLVESIAGAVLIDSRFNL 4136
            QQHLQHCSGLL+ QITEYVK++ +  D    L   K PK LGD+VESIAGA+LID++ NL
Sbjct: 1341 QQHLQHCSGLLMSQITEYVKYLSESQDTGKPLHGNKGPKVLGDMVESIAGAILIDTKLNL 1400

Query: 4137 DEVWRIFEPLLSPIVTPEKLELPPFRELNELCSHLGYFIRETSTIEEEIVHIELWLQLKD 4316
            DEVW+I++PLL+P VTP+KLELPP REL ELC  LGYFI++  T + E  H EL LQL+D
Sbjct: 1401 DEVWKIYKPLLTPFVTPDKLELPPLRELIELCDSLGYFIKDKCTRKGETFHAELRLQLQD 1460

Query: 4317 VLLKGEGRDKSKKAAKGQAAFQLLKDLEVRGISHFRHVSRKKNHEMVFDDSYIQDMDISI 4496
             LL GEG ++++KAA+G+AA +LL  LE RGIS+ R  S+K+      D+S +       
Sbjct: 1461 SLLIGEGYERTRKAARGEAAHRLLAQLETRGISYSRSGSKKRKQNPSHDESAMVLPSSVN 1520

Query: 4497 CRQSSGKDLNEPSSKKKKAXXXXXXXXXXXXXAPVVVTINKKKGGPRTSLYTLCKKQQWP 4676
            C      D  +P+ +                  PV+  IN KKGGPR++L+ LCKK QWP
Sbjct: 1521 C----STDACDPNVE-----------------TPVIGPINLKKGGPRSTLFELCKKLQWP 1559

Query: 4677 MPTFDSTQQQSRSPVEFGSGSERRIGFNIFVSKITLHIPNFGAIELTGEQRADKKSSQDS 4856
            MPTF++ + +SR  +E G G E+R GFN F+S ITL IPN G +E  GE RADKKSS DS
Sbjct: 1560 MPTFNTVENKSRVQIEIGEGLEKRKGFNSFLSNITLQIPNAGYVECEGEARADKKSSFDS 1619

Query: 4857 AALILLYELGRRGKCSIED 4913
            A+L++L EL ++G+  I D
Sbjct: 1620 ASLVMLQELQQQGRVIIND 1638