BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009959
         (590 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511467.1| pentatricopeptide repeat-containing protein,...   241   7e-62
ref|XP_002321560.1| predicted protein [Populus trichocarpa] gi|2...   240   1e-61
ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containi...   231   5e-59
emb|CBI15095.3| unnamed protein product [Vitis vinifera]              230   2e-58
ref|XP_003601293.1| Pentatricopeptide repeat-containing protein,...   228   4e-58

>ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550582|gb|EEF52069.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 482

 Score =  241 bits (615), Expect = 7e-62
 Identities = 112/171 (65%), Positives = 141/171 (82%)
 Frame = -3

Query: 513 LILKTQNHKTLTQTLDSLNPQWSPPLVNHILKHLWNDGPKALHFFKHLDTHHPTYTHCPT 334
           LIL + N +TL ++L S + QW+P LVN ILK LWN GPKALHFFK L +HHP+Y H  +
Sbjct: 35  LILNSTNSQTLAESLHSPSIQWTPQLVNTILKRLWNHGPKALHFFKIL-SHHPSYCHQAS 93

Query: 333 SYDHAIDLSARLRDYKTLWYLVSRMRSLRIGPTPKTFAVIIERYVSVGKPDRAVKVFLSM 154
           S+DHAID+ ARLRD++TLW+LVSRMRS R+GP+P+TFA+I ERY ++GKP RAV VF+SM
Sbjct: 94  SFDHAIDICARLRDFRTLWFLVSRMRSCRLGPSPRTFAIIAERYAAMGKPHRAVTVFMSM 153

Query: 153 HEHGCVQDLPSFNTLLDVLCKSRRVEMAYSFFKVFRNRFRADTISYNIIAN 1
           HE+GC QDL SFNT+LDVLCKS+RVEMAY+ FK  + +F+AD +SYNII N
Sbjct: 154 HEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKALKGKFKADCVSYNIIVN 204


>ref|XP_002321560.1| predicted protein [Populus trichocarpa] gi|222868556|gb|EEF05687.1|
           predicted protein [Populus trichocarpa]
          Length = 491

 Score =  240 bits (612), Expect = 1e-61
 Identities = 117/174 (67%), Positives = 138/174 (79%)
 Frame = -3

Query: 522 IINLILKTQNHKTLTQTLDSLNPQWSPPLVNHILKHLWNDGPKALHFFKHLDTHHPTYTH 343
           +  LIL + N + L QTL S   QW+P LVN ILK LWNDGPKAL FF  L +HHP+Y+H
Sbjct: 41  LATLILTSSNPQALAQTLHSPTIQWTPQLVNTILKRLWNDGPKALQFFNLL-SHHPSYSH 99

Query: 342 CPTSYDHAIDLSARLRDYKTLWYLVSRMRSLRIGPTPKTFAVIIERYVSVGKPDRAVKVF 163
            P+SYDHAID+SARLRD  +L  LV RMRS R+GPTPKTFA+I ERY S GKP RAVKVF
Sbjct: 100 HPSSYDHAIDISARLRDSPSLRSLVYRMRSARLGPTPKTFAIIAERYASAGKPHRAVKVF 159

Query: 162 LSMHEHGCVQDLPSFNTLLDVLCKSRRVEMAYSFFKVFRNRFRADTISYNIIAN 1
           LSMH+ GC QDL SFNT+LDVLCKS+RVEMAY+ FKVF+ +FRAD +SYN++ N
Sbjct: 160 LSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADCVSYNVMVN 213


>ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Vitis vinifera]
          Length = 450

 Score =  231 bits (590), Expect = 5e-59
 Identities = 112/164 (68%), Positives = 134/164 (81%), Gaps = 1/164 (0%)
 Frame = -3

Query: 522 IINLILKTQNHKTLTQTLDSLNPQWSPPLVNHILKHLWNDGPKALHFFKHLDTHHPTYTH 343
           I+NL+LKT + +TLT+TL+    +W+P LV+ +LK LWN GPKAL FFK LD +HPTY H
Sbjct: 42  IVNLVLKTDS-QTLTRTLEKYPVEWTPNLVDRVLKLLWNHGPKALQFFKSLD-YHPTYAH 99

Query: 342 CPTSYDHAIDLSARLRDYKTLWYLVSRMRSLRIGPTPKTFAVIIERYVSVGKPDRAVKVF 163
             +S+DHAID++ RLRDYKTLW LV RMR+ R+GP PKTFA+I ERYVS GKPDRA+K+F
Sbjct: 100 VSSSFDHAIDIAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIF 159

Query: 162 LSMHEHGCVQDLPSFNTLLDVLCKSRRVEMA-YSFFKVFRNRFR 34
            SMHEHGCVQDL SFNT+LDVLCKS+RVEMA    FKVFR RFR
Sbjct: 160 FSMHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRGRFR 203


>emb|CBI15095.3| unnamed protein product [Vitis vinifera]
          Length = 815

 Score =  230 bits (586), Expect = 2e-58
 Identities = 112/165 (67%), Positives = 134/165 (81%), Gaps = 1/165 (0%)
 Frame = -3

Query: 522 IINLILKTQNHKTLTQTLDSLNPQWSPPLVNHILKHLWNDGPKALHFFKHLDTHHPTYTH 343
           I+NL+LKT + +TLT+TL+    +W+P LV+ +LK LWN GPKAL FFK LD +HPTY H
Sbjct: 42  IVNLVLKTDS-QTLTRTLEKYPVEWTPNLVDRVLKLLWNHGPKALQFFKSLD-YHPTYAH 99

Query: 342 CPTSYDHAIDLSARLRDYKTLWYLVSRMRSLRIGPTPKTFAVIIERYVSVGKPDRAVKVF 163
             +S+DHAID++ RLRDYKTLW LV RMR+ R+GP PKTFA+I ERYVS GKPDRA+K+F
Sbjct: 100 VSSSFDHAIDIAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIF 159

Query: 162 LSMHEHGCVQDLPSFNTLLDVLCKSRRVEMA-YSFFKVFRNRFRA 31
            SMHEHGCVQDL SFNT+LDVLCKS+RVEMA    FKVFR  FRA
Sbjct: 160 FSMHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRGFFRA 204


>ref|XP_003601293.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula] gi|355490341|gb|AES71544.1|
           Pentatricopeptide repeat-containing protein, partial
           [Medicago truncatula]
          Length = 317

 Score =  228 bits (582), Expect = 4e-58
 Identities = 108/174 (62%), Positives = 140/174 (80%)
 Frame = -3

Query: 522 IINLILKTQNHKTLTQTLDSLNPQWSPPLVNHILKHLWNDGPKALHFFKHLDTHHPTYTH 343
           +  L+L++ + KTL+QTL +   QW+P LV++ILK LWN GPKAL FFKHLD  HPTY H
Sbjct: 41  VAKLVLES-DPKTLSQTLSNPTFQWTPLLVDNILKRLWNHGPKALQFFKHLD-RHPTYIH 98

Query: 342 CPTSYDHAIDLSARLRDYKTLWYLVSRMRSLRIGPTPKTFAVIIERYVSVGKPDRAVKVF 163
             +S++HA+D++ARLR+Y T W L+ RMR+LR+GPTPKTFA++ ERY + GK  +AVKVF
Sbjct: 99  SISSFEHAVDIAARLREYNTAWALMGRMRALRLGPTPKTFAILAERYATGGKAHKAVKVF 158

Query: 162 LSMHEHGCVQDLPSFNTLLDVLCKSRRVEMAYSFFKVFRNRFRADTISYNIIAN 1
           LSMHEHGC QDL SFNT+LDVLCK++RVEMA + FK  R RF+ D++SYNI+AN
Sbjct: 159 LSMHEHGCHQDLNSFNTILDVLCKTKRVEMANNLFKTLRGRFKCDSVSYNIMAN 212