BLASTX nr result
ID: Coptis24_contig00009953
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00009953 (1214 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002275686.2| PREDICTED: protein THYLAKOID FORMATION1, chl... 343 4e-92 ref|XP_003539891.1| PREDICTED: protein THYLAKOID FORMATION1, chl... 339 7e-91 ref|XP_004136805.1| PREDICTED: protein THYLAKOID FORMATION 1, ch... 337 3e-90 ref|XP_003540338.1| PREDICTED: protein THYLAKOID FORMATION1, chl... 336 8e-90 ref|XP_003543363.1| PREDICTED: protein THYLAKOID FORMATION1, chl... 335 1e-89 >ref|XP_002275686.2| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Vitis vinifera] Length = 299 Score = 343 bits (881), Expect = 4e-92 Identities = 180/257 (70%), Positives = 206/257 (80%), Gaps = 6/257 (2%) Frame = +1 Query: 82 MASISSMPFTVSSQVSERKAV-----SSSAKFYRFRFGVKFIXXXXXXXXXXXXX-MVVH 243 MA+++S+ F+ Q SERK S ++ F FRF F MVV Sbjct: 1 MAAVTSLSFSALGQSSERKVPVPTTRSFASAFEAFRFRANFYAVGVRSSSSSSSSRMVVQ 60 Query: 244 CMSSVKDVPPVSETKMNFLKAYSRPIPSIYNTVLQELIVQQHLMRYKKTYCYDAVFALGF 423 CMSSV DVP VSETKMNFLK Y RPIPSIYNT+LQEL+VQQHLMRYK+TY YDAVFALGF Sbjct: 61 CMSSVTDVPTVSETKMNFLKNYKRPIPSIYNTLLQELMVQQHLMRYKRTYRYDAVFALGF 120 Query: 424 VTVYDKLMEGYTSNEDREAIFKAYIQALKEDPEKYRADAQKLEEWAKTQTASSLLEFPSK 603 VTVYD+LM+GY S+EDR+ IF+ YI+AL+EDPE+YR DAQ LEEWA++QTASSL+EF SK Sbjct: 121 VTVYDQLMDGYPSDEDRDIIFQVYIKALREDPEQYRKDAQMLEEWARSQTASSLVEFSSK 180 Query: 604 EGEVEVLLKDISERAAGKGSFSYSRFFAIGLFRLLELANATEPAVLEKLCAVMNINKRSV 783 EGEVE +LKDI+ERA GKGSFSYSRFFAIGLFRLLELANATEP +LEKLCA NI+KRSV Sbjct: 181 EGEVEGILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPTILEKLCAAFNISKRSV 240 Query: 784 DRDLDVYRNLLSKLVQA 834 DRDLDVYRNLL+KLVQA Sbjct: 241 DRDLDVYRNLLTKLVQA 257 >ref|XP_003539891.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Glycine max] Length = 291 Score = 339 bits (870), Expect = 7e-91 Identities = 175/252 (69%), Positives = 203/252 (80%) Frame = +1 Query: 79 IMASISSMPFTVSSQVSERKAVSSSAKFYRFRFGVKFIXXXXXXXXXXXXXMVVHCMSSV 258 +++S S T SS +SS++ +RFR G + MVV C SSV Sbjct: 4 VISSFSFSTLTQSSSQRNLTTLSSNSPTFRFRVGFSCLNVGVRASNSASK-MVVRCSSSV 62 Query: 259 KDVPPVSETKMNFLKAYSRPIPSIYNTVLQELIVQQHLMRYKKTYCYDAVFALGFVTVYD 438 + P VSETK+NFLKAY RPIPSIYNTVLQELIVQQHLMRYK++Y YDAVFALGFVTVY+ Sbjct: 63 AEPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDAVFALGFVTVYE 122 Query: 439 KLMEGYTSNEDREAIFKAYIQALKEDPEKYRADAQKLEEWAKTQTASSLLEFPSKEGEVE 618 +LMEGY S+EDR+AIF+AYIQALKEDPE+YR DA+KLEEWA++Q +SLLEF S+EGEVE Sbjct: 123 QLMEGYPSDEDRDAIFQAYIQALKEDPEQYRVDAKKLEEWARSQNPNSLLEFSSREGEVE 182 Query: 619 VLLKDISERAAGKGSFSYSRFFAIGLFRLLELANATEPAVLEKLCAVMNINKRSVDRDLD 798 +LKDI+ERA GKG FSYSRFFAIGLFRLLELANA EP +LEKLCAV+N+NKRSVDRDLD Sbjct: 183 GILKDIAERAGGKGDFSYSRFFAIGLFRLLELANAMEPTILEKLCAVLNVNKRSVDRDLD 242 Query: 799 VYRNLLSKLVQA 834 VYRNLLSKLVQA Sbjct: 243 VYRNLLSKLVQA 254 >ref|XP_004136805.1| PREDICTED: protein THYLAKOID FORMATION 1, chloroplastic-like [Cucumis sativus] gi|449493105|ref|XP_004159194.1| PREDICTED: protein THYLAKOID FORMATION 1, chloroplastic-like [Cucumis sativus] Length = 298 Score = 337 bits (865), Expect = 3e-90 Identities = 173/257 (67%), Positives = 208/257 (80%), Gaps = 6/257 (2%) Frame = +1 Query: 82 MASISSMPFTVSSQVSERKAV-----SSSAKFYRFRFGVK-FIXXXXXXXXXXXXXMVVH 243 MA+++S+ F+ +Q S+R+ + S S+ F+ F F F MV+H Sbjct: 1 MAAVNSISFSTLNQCSDRRLLLPSSRSHSSNFHGFPFRTSVFTHYSRVRASTFSSRMVIH 60 Query: 244 CMSSVKDVPPVSETKMNFLKAYSRPIPSIYNTVLQELIVQQHLMRYKKTYCYDAVFALGF 423 CMS+ DV V+ETK+NFLKAY RPIPSIYNTVLQELIVQQHLMRYK+TY YD VFALGF Sbjct: 61 CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120 Query: 424 VTVYDKLMEGYTSNEDREAIFKAYIQALKEDPEKYRADAQKLEEWAKTQTASSLLEFPSK 603 VTVYD+LMEGY S+EDREAIF+AYI+AL EDPE+YR DA+K EEWA++QTA+SL+EF S+ Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASR 180 Query: 604 EGEVEVLLKDISERAAGKGSFSYSRFFAIGLFRLLELANATEPAVLEKLCAVMNINKRSV 783 EGEVE +LKDI+ERA KG+FSYSRFFAIGLFRLLELANATEP++LEKLCA +NI+K+ V Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240 Query: 784 DRDLDVYRNLLSKLVQA 834 DRDLDVYRNLLSKLVQA Sbjct: 241 DRDLDVYRNLLSKLVQA 257 >ref|XP_003540338.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Glycine max] Length = 297 Score = 336 bits (861), Expect = 8e-90 Identities = 175/261 (67%), Positives = 205/261 (78%), Gaps = 10/261 (3%) Frame = +1 Query: 82 MASISSMPFTVSSQVSERKAVSSSAKF---------YRFRFGVKFIXXXXXXXXXXXXXM 234 MA+++S+ F+ + SERK SS +F +R F ++ M Sbjct: 1 MAALTSLSFSAVTHCSERKVTLSSTRFLASSSEIFGFRTDFSYHYVGVRASNSPSK---M 57 Query: 235 VVHCMSSVKDVPP-VSETKMNFLKAYSRPIPSIYNTVLQELIVQQHLMRYKKTYCYDAVF 411 VV CMSS DVPP VSETK+NFLKAY RPIPSIYNTVLQELIVQQHLM+YK++Y YD VF Sbjct: 58 VVQCMSSATDVPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMKYKRSYRYDPVF 117 Query: 412 ALGFVTVYDKLMEGYTSNEDREAIFKAYIQALKEDPEKYRADAQKLEEWAKTQTASSLLE 591 ALGFVT+YDKLMEGY S+EDR+AIF+AYI+ALKEDPE+YR DA+KLEEWA+ Q +SL+E Sbjct: 118 ALGFVTIYDKLMEGYPSDEDRDAIFQAYIKALKEDPEQYRIDARKLEEWARVQKPTSLVE 177 Query: 592 FPSKEGEVEVLLKDISERAAGKGSFSYSRFFAIGLFRLLELANATEPAVLEKLCAVMNIN 771 F SKEGEVE +LKDI+ERA GKG FSYSRFFA+GLFRLLELANATEP +L+KLC +NIN Sbjct: 178 FSSKEGEVEGILKDIAERAGGKGEFSYSRFFAVGLFRLLELANATEPTILDKLCVALNIN 237 Query: 772 KRSVDRDLDVYRNLLSKLVQA 834 KRSVDRDLDVYR LLSKLVQA Sbjct: 238 KRSVDRDLDVYRILLSKLVQA 258 >ref|XP_003543363.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Glycine max] Length = 297 Score = 335 bits (860), Expect = 1e-89 Identities = 174/261 (66%), Positives = 206/261 (78%), Gaps = 10/261 (3%) Frame = +1 Query: 82 MASISSMPFTVSSQVSERKAVSSSAKF---------YRFRFGVKFIXXXXXXXXXXXXXM 234 MA+++S+ F+ + SERK SS +F +R F ++ M Sbjct: 1 MAALTSLSFSAVTHCSERKVTLSSTRFLASSSELFGFRTDFSYHYVGVRASNSASK---M 57 Query: 235 VVHCMSSVKDVPP-VSETKMNFLKAYSRPIPSIYNTVLQELIVQQHLMRYKKTYCYDAVF 411 VV CMSS DVPP VSETK+NFLKAY RPIPSIYNTVLQELIVQQHLM+YK++Y YD VF Sbjct: 58 VVQCMSSATDVPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMKYKRSYRYDPVF 117 Query: 412 ALGFVTVYDKLMEGYTSNEDREAIFKAYIQALKEDPEKYRADAQKLEEWAKTQTASSLLE 591 ALGFVT+YDKLMEGY S+EDR+AIF+AYI+ALKEDPE+YR DA+KLEEWA+ Q+ +SL+E Sbjct: 118 ALGFVTIYDKLMEGYPSDEDRDAIFQAYIKALKEDPEQYRIDARKLEEWARVQSPTSLVE 177 Query: 592 FPSKEGEVEVLLKDISERAAGKGSFSYSRFFAIGLFRLLELANATEPAVLEKLCAVMNIN 771 F SKEGE E +LKDI+ERA GKG FSYSRFFA+GLFRL+ELANATEP +L+KLCA +NIN Sbjct: 178 FSSKEGEAERILKDIAERAGGKGEFSYSRFFAVGLFRLVELANATEPTILDKLCAALNIN 237 Query: 772 KRSVDRDLDVYRNLLSKLVQA 834 KRSVDRDLDVYR LLSKLVQA Sbjct: 238 KRSVDRDLDVYRILLSKLVQA 258