BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009953
         (1214 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275686.2| PREDICTED: protein THYLAKOID FORMATION1, chl...   343   4e-92
ref|XP_003539891.1| PREDICTED: protein THYLAKOID FORMATION1, chl...   339   7e-91
ref|XP_004136805.1| PREDICTED: protein THYLAKOID FORMATION 1, ch...   337   3e-90
ref|XP_003540338.1| PREDICTED: protein THYLAKOID FORMATION1, chl...   336   8e-90
ref|XP_003543363.1| PREDICTED: protein THYLAKOID FORMATION1, chl...   335   1e-89

>ref|XP_002275686.2| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Vitis
           vinifera]
          Length = 299

 Score =  343 bits (881), Expect = 4e-92
 Identities = 180/257 (70%), Positives = 206/257 (80%), Gaps = 6/257 (2%)
 Frame = +1

Query: 82  MASISSMPFTVSSQVSERKAV-----SSSAKFYRFRFGVKFIXXXXXXXXXXXXX-MVVH 243
           MA+++S+ F+   Q SERK       S ++ F  FRF   F               MVV 
Sbjct: 1   MAAVTSLSFSALGQSSERKVPVPTTRSFASAFEAFRFRANFYAVGVRSSSSSSSSRMVVQ 60

Query: 244 CMSSVKDVPPVSETKMNFLKAYSRPIPSIYNTVLQELIVQQHLMRYKKTYCYDAVFALGF 423
           CMSSV DVP VSETKMNFLK Y RPIPSIYNT+LQEL+VQQHLMRYK+TY YDAVFALGF
Sbjct: 61  CMSSVTDVPTVSETKMNFLKNYKRPIPSIYNTLLQELMVQQHLMRYKRTYRYDAVFALGF 120

Query: 424 VTVYDKLMEGYTSNEDREAIFKAYIQALKEDPEKYRADAQKLEEWAKTQTASSLLEFPSK 603
           VTVYD+LM+GY S+EDR+ IF+ YI+AL+EDPE+YR DAQ LEEWA++QTASSL+EF SK
Sbjct: 121 VTVYDQLMDGYPSDEDRDIIFQVYIKALREDPEQYRKDAQMLEEWARSQTASSLVEFSSK 180

Query: 604 EGEVEVLLKDISERAAGKGSFSYSRFFAIGLFRLLELANATEPAVLEKLCAVMNINKRSV 783
           EGEVE +LKDI+ERA GKGSFSYSRFFAIGLFRLLELANATEP +LEKLCA  NI+KRSV
Sbjct: 181 EGEVEGILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPTILEKLCAAFNISKRSV 240

Query: 784 DRDLDVYRNLLSKLVQA 834
           DRDLDVYRNLL+KLVQA
Sbjct: 241 DRDLDVYRNLLTKLVQA 257


>ref|XP_003539891.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like
           [Glycine max]
          Length = 291

 Score =  339 bits (870), Expect = 7e-91
 Identities = 175/252 (69%), Positives = 203/252 (80%)
 Frame = +1

Query: 79  IMASISSMPFTVSSQVSERKAVSSSAKFYRFRFGVKFIXXXXXXXXXXXXXMVVHCMSSV 258
           +++S S    T SS       +SS++  +RFR G   +             MVV C SSV
Sbjct: 4   VISSFSFSTLTQSSSQRNLTTLSSNSPTFRFRVGFSCLNVGVRASNSASK-MVVRCSSSV 62

Query: 259 KDVPPVSETKMNFLKAYSRPIPSIYNTVLQELIVQQHLMRYKKTYCYDAVFALGFVTVYD 438
            + P VSETK+NFLKAY RPIPSIYNTVLQELIVQQHLMRYK++Y YDAVFALGFVTVY+
Sbjct: 63  AEPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDAVFALGFVTVYE 122

Query: 439 KLMEGYTSNEDREAIFKAYIQALKEDPEKYRADAQKLEEWAKTQTASSLLEFPSKEGEVE 618
           +LMEGY S+EDR+AIF+AYIQALKEDPE+YR DA+KLEEWA++Q  +SLLEF S+EGEVE
Sbjct: 123 QLMEGYPSDEDRDAIFQAYIQALKEDPEQYRVDAKKLEEWARSQNPNSLLEFSSREGEVE 182

Query: 619 VLLKDISERAAGKGSFSYSRFFAIGLFRLLELANATEPAVLEKLCAVMNINKRSVDRDLD 798
            +LKDI+ERA GKG FSYSRFFAIGLFRLLELANA EP +LEKLCAV+N+NKRSVDRDLD
Sbjct: 183 GILKDIAERAGGKGDFSYSRFFAIGLFRLLELANAMEPTILEKLCAVLNVNKRSVDRDLD 242

Query: 799 VYRNLLSKLVQA 834
           VYRNLLSKLVQA
Sbjct: 243 VYRNLLSKLVQA 254


>ref|XP_004136805.1| PREDICTED: protein THYLAKOID FORMATION 1, chloroplastic-like
           [Cucumis sativus] gi|449493105|ref|XP_004159194.1|
           PREDICTED: protein THYLAKOID FORMATION 1,
           chloroplastic-like [Cucumis sativus]
          Length = 298

 Score =  337 bits (865), Expect = 3e-90
 Identities = 173/257 (67%), Positives = 208/257 (80%), Gaps = 6/257 (2%)
 Frame = +1

Query: 82  MASISSMPFTVSSQVSERKAV-----SSSAKFYRFRFGVK-FIXXXXXXXXXXXXXMVVH 243
           MA+++S+ F+  +Q S+R+ +     S S+ F+ F F    F              MV+H
Sbjct: 1   MAAVNSISFSTLNQCSDRRLLLPSSRSHSSNFHGFPFRTSVFTHYSRVRASTFSSRMVIH 60

Query: 244 CMSSVKDVPPVSETKMNFLKAYSRPIPSIYNTVLQELIVQQHLMRYKKTYCYDAVFALGF 423
           CMS+  DV  V+ETK+NFLKAY RPIPSIYNTVLQELIVQQHLMRYK+TY YD VFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 424 VTVYDKLMEGYTSNEDREAIFKAYIQALKEDPEKYRADAQKLEEWAKTQTASSLLEFPSK 603
           VTVYD+LMEGY S+EDREAIF+AYI+AL EDPE+YR DA+K EEWA++QTA+SL+EF S+
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASR 180

Query: 604 EGEVEVLLKDISERAAGKGSFSYSRFFAIGLFRLLELANATEPAVLEKLCAVMNINKRSV 783
           EGEVE +LKDI+ERA  KG+FSYSRFFAIGLFRLLELANATEP++LEKLCA +NI+K+ V
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240

Query: 784 DRDLDVYRNLLSKLVQA 834
           DRDLDVYRNLLSKLVQA
Sbjct: 241 DRDLDVYRNLLSKLVQA 257


>ref|XP_003540338.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like
           [Glycine max]
          Length = 297

 Score =  336 bits (861), Expect = 8e-90
 Identities = 175/261 (67%), Positives = 205/261 (78%), Gaps = 10/261 (3%)
 Frame = +1

Query: 82  MASISSMPFTVSSQVSERKAVSSSAKF---------YRFRFGVKFIXXXXXXXXXXXXXM 234
           MA+++S+ F+  +  SERK   SS +F         +R  F   ++             M
Sbjct: 1   MAALTSLSFSAVTHCSERKVTLSSTRFLASSSEIFGFRTDFSYHYVGVRASNSPSK---M 57

Query: 235 VVHCMSSVKDVPP-VSETKMNFLKAYSRPIPSIYNTVLQELIVQQHLMRYKKTYCYDAVF 411
           VV CMSS  DVPP VSETK+NFLKAY RPIPSIYNTVLQELIVQQHLM+YK++Y YD VF
Sbjct: 58  VVQCMSSATDVPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMKYKRSYRYDPVF 117

Query: 412 ALGFVTVYDKLMEGYTSNEDREAIFKAYIQALKEDPEKYRADAQKLEEWAKTQTASSLLE 591
           ALGFVT+YDKLMEGY S+EDR+AIF+AYI+ALKEDPE+YR DA+KLEEWA+ Q  +SL+E
Sbjct: 118 ALGFVTIYDKLMEGYPSDEDRDAIFQAYIKALKEDPEQYRIDARKLEEWARVQKPTSLVE 177

Query: 592 FPSKEGEVEVLLKDISERAAGKGSFSYSRFFAIGLFRLLELANATEPAVLEKLCAVMNIN 771
           F SKEGEVE +LKDI+ERA GKG FSYSRFFA+GLFRLLELANATEP +L+KLC  +NIN
Sbjct: 178 FSSKEGEVEGILKDIAERAGGKGEFSYSRFFAVGLFRLLELANATEPTILDKLCVALNIN 237

Query: 772 KRSVDRDLDVYRNLLSKLVQA 834
           KRSVDRDLDVYR LLSKLVQA
Sbjct: 238 KRSVDRDLDVYRILLSKLVQA 258


>ref|XP_003543363.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like
           [Glycine max]
          Length = 297

 Score =  335 bits (860), Expect = 1e-89
 Identities = 174/261 (66%), Positives = 206/261 (78%), Gaps = 10/261 (3%)
 Frame = +1

Query: 82  MASISSMPFTVSSQVSERKAVSSSAKF---------YRFRFGVKFIXXXXXXXXXXXXXM 234
           MA+++S+ F+  +  SERK   SS +F         +R  F   ++             M
Sbjct: 1   MAALTSLSFSAVTHCSERKVTLSSTRFLASSSELFGFRTDFSYHYVGVRASNSASK---M 57

Query: 235 VVHCMSSVKDVPP-VSETKMNFLKAYSRPIPSIYNTVLQELIVQQHLMRYKKTYCYDAVF 411
           VV CMSS  DVPP VSETK+NFLKAY RPIPSIYNTVLQELIVQQHLM+YK++Y YD VF
Sbjct: 58  VVQCMSSATDVPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMKYKRSYRYDPVF 117

Query: 412 ALGFVTVYDKLMEGYTSNEDREAIFKAYIQALKEDPEKYRADAQKLEEWAKTQTASSLLE 591
           ALGFVT+YDKLMEGY S+EDR+AIF+AYI+ALKEDPE+YR DA+KLEEWA+ Q+ +SL+E
Sbjct: 118 ALGFVTIYDKLMEGYPSDEDRDAIFQAYIKALKEDPEQYRIDARKLEEWARVQSPTSLVE 177

Query: 592 FPSKEGEVEVLLKDISERAAGKGSFSYSRFFAIGLFRLLELANATEPAVLEKLCAVMNIN 771
           F SKEGE E +LKDI+ERA GKG FSYSRFFA+GLFRL+ELANATEP +L+KLCA +NIN
Sbjct: 178 FSSKEGEAERILKDIAERAGGKGEFSYSRFFAVGLFRLVELANATEPTILDKLCAALNIN 237

Query: 772 KRSVDRDLDVYRNLLSKLVQA 834
           KRSVDRDLDVYR LLSKLVQA
Sbjct: 238 KRSVDRDLDVYRILLSKLVQA 258