BLASTX nr result

ID: Coptis24_contig00009880 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009880
         (569 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002529504.1| coatomer alpha subunit, putative [Ricinus co...   333   1e-89
ref|XP_002321558.1| predicted protein [Populus trichocarpa] gi|2...   332   2e-89
ref|XP_004165122.1| PREDICTED: coatomer subunit alpha-1-like [Cu...   332   3e-89
ref|XP_004150060.1| PREDICTED: LOW QUALITY PROTEIN: coatomer sub...   332   3e-89
ref|XP_004165124.1| PREDICTED: coatomer subunit alpha-1-like, pa...   331   4e-89

>ref|XP_002529504.1| coatomer alpha subunit, putative [Ricinus communis]
           gi|223531020|gb|EEF32873.1| coatomer alpha subunit,
           putative [Ricinus communis]
          Length = 1217

 Score =  333 bits (854), Expect = 1e-89
 Identities = 153/171 (89%), Positives = 162/171 (94%)
 Frame = -1

Query: 515 GDDYSIKVWNYKLHRCLFTLLGHLEYIRAVQFHHESPWIRSARDDQTIRIWNWQSRTCIA 336
           GDDY IKVWNYK+HRCLFTLLGHL+YIR VQFHHE PWI SA DDQTIRIWNWQSRTCI+
Sbjct: 70  GDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129

Query: 335 VLTGHVHYVMCAVFHPKEDLVVSASLDQTIRVWDIGALRKKTVSPADDSLRLSEMSSDMF 156
           VLTGH HYVMCA FHPKEDLVVSASLDQT+RVWDIGALRKKTVSPADD LRLS+M++D+F
Sbjct: 130 VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDIF 189

Query: 155 GGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWE 3
           GGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQ+KLWRMND KAWE
Sbjct: 190 GGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWE 240



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
 Frame = -1

Query: 464 FTLLGHLEYIRAVQFHHESPWIRSARDDQTIRIWNWQSRTC--IAVLTGHVHYVMCAVFH 291
           + L GH   +    FH   P I S  DD+ +++W         +  L GH++ V C +FH
Sbjct: 198 YVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDALRGHMNNVSCVMFH 257

Query: 290 PKEDLVVSASLDQTIRVWDI 231
            K+D++VS S D++IRVWD+
Sbjct: 258 AKQDIIVSNSEDKSIRVWDV 277


>ref|XP_002321558.1| predicted protein [Populus trichocarpa] gi|222868554|gb|EEF05685.1|
           predicted protein [Populus trichocarpa]
          Length = 1218

 Score =  332 bits (852), Expect = 2e-89
 Identities = 152/171 (88%), Positives = 162/171 (94%)
 Frame = -1

Query: 515 GDDYSIKVWNYKLHRCLFTLLGHLEYIRAVQFHHESPWIRSARDDQTIRIWNWQSRTCIA 336
           GDDY IKVWNYKLHRCLFTLLGHL+YIR VQFHHE PWI SA DDQTIRIWNWQSRTCI+
Sbjct: 70  GDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129

Query: 335 VLTGHVHYVMCAVFHPKEDLVVSASLDQTIRVWDIGALRKKTVSPADDSLRLSEMSSDMF 156
           VLTGH HYVMCA FHPKEDLVVSASLDQT+RVWDIGALRKKTVSPADD +RL++M+SD+F
Sbjct: 130 VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIMRLTQMNSDLF 189

Query: 155 GGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWE 3
           GGVDAVVKYVLEGHDRGVNWA+FHPTLPLIVSGADDRQ+KLWRMND KAWE
Sbjct: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWE 240



 Score = 63.2 bits (152), Expect = 3e-08
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
 Frame = -1

Query: 464 FTLLGHLEYIRAVQFHHESPWIRSARDDQTIRIWNWQSRTC--IAVLTGHVHYVMCAVFH 291
           + L GH   +    FH   P I S  DD+ +++W         +  L GH++ V C +FH
Sbjct: 198 YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFH 257

Query: 290 PKEDLVVSASLDQTIRVWDI 231
            K+D++VS S D++IRVWD+
Sbjct: 258 AKQDIIVSNSEDKSIRVWDV 277


>ref|XP_004165122.1| PREDICTED: coatomer subunit alpha-1-like [Cucumis sativus]
          Length = 1219

 Score =  332 bits (851), Expect = 3e-89
 Identities = 152/171 (88%), Positives = 161/171 (94%)
 Frame = -1

Query: 515 GDDYSIKVWNYKLHRCLFTLLGHLEYIRAVQFHHESPWIRSARDDQTIRIWNWQSRTCIA 336
           GDDY IKVWNYK HRCLFTLLGHL+YIR VQFHHE PWI SA DDQTIRIWNWQSRTCI+
Sbjct: 70  GDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129

Query: 335 VLTGHVHYVMCAVFHPKEDLVVSASLDQTIRVWDIGALRKKTVSPADDSLRLSEMSSDMF 156
           VLTGH HYVMCA FHPKEDLVVSASLDQT+RVWDIGALRKKTVSPADD LRLS+M++D+F
Sbjct: 130 VLTGHNHYVMCAAFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDVLRLSQMNADLF 189

Query: 155 GGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWE 3
           GGVDAVVKYVLEGHDRGVNWA+FHPTLPLIVSGADDRQ+KLWRMND KAWE
Sbjct: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWE 240



 Score = 61.6 bits (148), Expect = 9e-08
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
 Frame = -1

Query: 464 FTLLGHLEYIRAVQFHHESPWIRSARDDQTIRIWNWQSRTC--IAVLTGHVHYVMCAVFH 291
           + L GH   +    FH   P I S  DD+ +++W         +  L GH++ V C +FH
Sbjct: 198 YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFH 257

Query: 290 PKEDLVVSASLDQTIRVWD 234
            K+D++VS S D++IR+WD
Sbjct: 258 AKQDIIVSNSEDKSIRIWD 276


>ref|XP_004150060.1| PREDICTED: LOW QUALITY PROTEIN: coatomer subunit alpha-1-like
           [Cucumis sativus]
          Length = 1183

 Score =  332 bits (851), Expect = 3e-89
 Identities = 152/171 (88%), Positives = 161/171 (94%)
 Frame = -1

Query: 515 GDDYSIKVWNYKLHRCLFTLLGHLEYIRAVQFHHESPWIRSARDDQTIRIWNWQSRTCIA 336
           GDDY IKVWNYK HRCLFTLLGHL+YIR VQFHHE PWI SA DDQTIRIWNWQSRTCI+
Sbjct: 70  GDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129

Query: 335 VLTGHVHYVMCAVFHPKEDLVVSASLDQTIRVWDIGALRKKTVSPADDSLRLSEMSSDMF 156
           VLTGH HYVMCA FHPKEDLVVSASLDQT+RVWDIGALRKKTVSPADD LRLS+M++D+F
Sbjct: 130 VLTGHNHYVMCAAFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDVLRLSQMNADLF 189

Query: 155 GGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWE 3
           GGVDAVVKYVLEGHDRGVNWA+FHPTLPLIVSGADDRQ+KLWRMND KAWE
Sbjct: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWE 240



 Score = 61.6 bits (148), Expect = 9e-08
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
 Frame = -1

Query: 464 FTLLGHLEYIRAVQFHHESPWIRSARDDQTIRIWNWQSRTC--IAVLTGHVHYVMCAVFH 291
           + L GH   +    FH   P I S  DD+ +++W         +  L GH++ V C +FH
Sbjct: 198 YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFH 257

Query: 290 PKEDLVVSASLDQTIRVWD 234
            K+D++VS S D++IR+WD
Sbjct: 258 AKQDIIVSNSEDKSIRIWD 276


>ref|XP_004165124.1| PREDICTED: coatomer subunit alpha-1-like, partial [Cucumis sativus]
          Length = 855

 Score =  331 bits (849), Expect = 4e-89
 Identities = 152/171 (88%), Positives = 161/171 (94%)
 Frame = -1

Query: 515 GDDYSIKVWNYKLHRCLFTLLGHLEYIRAVQFHHESPWIRSARDDQTIRIWNWQSRTCIA 336
           GDDY IKVWNYK HRCLFTLLGHL+YIR VQFHHE PWI SA DDQTIRIWNWQSRTCI+
Sbjct: 70  GDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129

Query: 335 VLTGHVHYVMCAVFHPKEDLVVSASLDQTIRVWDIGALRKKTVSPADDSLRLSEMSSDMF 156
           VLTGH HYVMCA FHPKEDLVVSASLDQT+RVWDIGALRKKTVSPADD LRLS+M++D+F
Sbjct: 130 VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNADLF 189

Query: 155 GGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWE 3
           GGVDAVVKYVLEGHDRGVNWA+FHPTLPLIVSGADDRQ+KLWRMND KAWE
Sbjct: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWE 240



 Score = 61.6 bits (148), Expect = 9e-08
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
 Frame = -1

Query: 464 FTLLGHLEYIRAVQFHHESPWIRSARDDQTIRIWNWQSRTC--IAVLTGHVHYVMCAVFH 291
           + L GH   +    FH   P I S  DD+ +++W         +  L GH++ V C +FH
Sbjct: 198 YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFH 257

Query: 290 PKEDLVVSASLDQTIRVWD 234
            K+D++VS S D++IR+WD
Sbjct: 258 AKQDIIVSNSEDKSIRIWD 276


Top