BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009858
         (1117 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga...   152   2e-34
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   149   2e-33
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...   145   1e-32
ref|XP_002467234.1| hypothetical protein SORBIDRAFT_01g021750 [S...   131   7e-31
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...   127   5e-27

>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1363

 Score =  152 bits (383), Expect = 2e-34
 Identities = 113/341 (33%), Positives = 163/341 (47%), Gaps = 13/341 (3%)
 Frame = -2

Query: 1014 ETKANEKRMGNILKKLKFKGSCVIPALGLKGGLAVFWKEELQL-EIVRAMPNHITGI*PG 838
            ETK +  R     K+L +    +IPA G +GG+ + WK ++ L       PNH   +   
Sbjct: 36   ETKCSSLRADQATKRLGYVNFRIIPAFGKRGGIWLMWKADIALVHYADYQPNHFHAL--- 92

Query: 837  YYF*L------VFYLCLW*PCYA*KENS--VG*NQNSIPLYSRNILGPWLLFGDFNAIIS 682
              F L      V    +  P    + N   V   ++S P  +     PWL+ GD N ++ 
Sbjct: 93   --FKLRSDIPEVLLTGMHAPSVVSERNKYWVDLTEDSPPRGT-----PWLVAGDMNEVLH 145

Query: 681  PDEKIGGNSVMNKCMLDFNDFVNDIGLFIDLGFKGPKFTWCNKRTFKSHILERLDRALVT 502
             +EK+GG  V  +      D++    L +DLGF+GPKFTW N RT  S I ERLDRALV 
Sbjct: 146  GNEKMGGRQVGKEQGKQCKDWIAANAL-LDLGFQGPKFTWTNGRTGGSLIKERLDRALVN 204

Query: 501  TEWLALFPEVSVKTMPNYTSVHLSLVINLTHEEPSLKKPFRFYDMWLKDPRCQGIVEEGW 322
            +EWL LFP+  V  +P   S H  L+I       S   PFR  ++W   P    ++EE W
Sbjct: 205  SEWLDLFPDTKVIHLPRTFSDHCPLLILFNENPRSESFPFRCKEVWAYHPDFTNVIEETW 264

Query: 321  SSRDYAPGCNFNRRIANTRKKLIKWNKKVFGDIFYRIKKVKKDL---ETCLSLDCTEDYY 151
             S   +     +  +++ +     W+K VFG IF + K++   L   +  LS+  +    
Sbjct: 265  GSHHNSYVAARDLFLSSVK----SWSKYVFGSIFQKKKRILARLGGIQKSLSIHPSVFLS 320

Query: 150  KQRSELEAELKTLYEMEESFWQQKAGYNWV-*GGKNTKFFH 31
            K   +L  EL  L + E  FW QKAG +    G  NTK+FH
Sbjct: 321  KLEIDLLVELNELSKQERVFWAQKAGIDRAKLGDMNTKYFH 361


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  149 bits (375), Expect = 2e-33
 Identities = 87/247 (35%), Positives = 126/247 (51%), Gaps = 7/247 (2%)
 Frame = -2

Query: 720  PWLLFGDFNAIISPDEKIGGNSVMNKCMLDFNDFVNDIGLFIDLGFKGPKFTWCN-KRTF 544
            PWL+ GDFN I+   EK GG       M +F   + D GL  DLGF+G  FTW N   + 
Sbjct: 377  PWLMAGDFNEILFSHEKQGGRMKAQSAMDEFRHALTDCGLD-DLGFEGDAFTWRNHSHSQ 435

Query: 543  KSHILERLDRALVTTEWLALFPEVSVKTMPNYTSVHLSLVINLTHEEPSLK-----KPFR 379
            + +I ERLDRA+   EW A+FP   V       S H  ++I L  +   ++       FR
Sbjct: 436  EGYIRERLDRAVANPEWRAMFPAARVINGDPRHSDHRPVIIELEGKNKGVRGRNGHNDFR 495

Query: 378  FYDMWLKDPRCQGIVEEGWSSRDYAPGCNFNRRIANTRKKLIKWNKKVFGDIFYRIKKVK 199
            F   WL++ + + +V+E W       G   +  +A     L  W+  V GD+  R+KKVK
Sbjct: 496  FEAAWLEEEKFKEVVKEAWDVSAGLQGLPVHASLAGVAAGLSSWSSNVLGDLEKRVKKVK 555

Query: 198  KDLETCLSLDCTEDYYKQRSELEAELKTLYEMEESFWQQKAGYNWV-*GGKNTKFFHLSM 22
            K+LETC     + D   +   L   L+ L +  + +W+Q+A  NW+  G +NT FFH S 
Sbjct: 556  KELETCRRQPISRDQVVREEVLRYRLEKLEQQVDIYWKQRAHTNWLNKGDRNTSFFHASC 615

Query: 21   IFRKRKN 1
              R+R+N
Sbjct: 616  SERRRRN 622


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score =  145 bits (367), Expect = 1e-32
 Identities = 98/348 (28%), Positives = 169/348 (48%), Gaps = 10/348 (2%)
 Frame = -2

Query: 1014 ETKANEKRMGNILKKLKFKGSCVIPALG----LKGGLAVFWKEELQLEIVRAMPNHITGI 847
            ETK     M ++ KKLK++    +   G     +GGLA+ W+ E++++++    NHI  +
Sbjct: 37   ETKLKSYEMESVKKKLKWEHMVAVDCEGECRKRRGGLAMLWRSEIKVQVMSMSSNHIDIV 96

Query: 846  *PGYYF*LVFYLCLW*PCYA*KENSVG*NQNSIPLYSRNILGPWLLFGDFNAIISPDEKI 667
                      +  ++       ++  G   +++   SR    PWL  GDFN ++   EK 
Sbjct: 97   VGEEAQGEWRFTGIYGYPEEEHKDKTGALLSALARASRR---PWLCGGDFNLMLVASEKK 153

Query: 666  GGNSVMNKCMLDFNDFVNDIGLFIDLGFKGPKFTWCNKRTFKSHILERLDRALVTTEWLA 487
            GG+   ++    F + + +   F+DLGF G +FTW N R   ++I ERLDR +    W  
Sbjct: 154  GGDGFNSREADIFRNAMEECH-FMDLGFVGYEFTWTNNRGGDANIQERLDRFVANDLWKI 212

Query: 486  LFPEVSVKTMPNYTSVHLSLVINLTHEEPSL-----KKPFRFYDMWLKDPRCQGIVEEGW 322
             FP   V  +P   S H+ +V ++   + +       K FRF  MWL++     +V+E W
Sbjct: 213  KFPGSFVSHLPKRKSDHVPIVASVKGAQSAATRTKKSKRFRFEAMWLREGESDEVVKETW 272

Query: 321  SSRDYAPGCNFNRRIANTRKKLIKWNKKVFGDIFYRIKKVKKDLETCLSLDCTEDYYKQR 142
                   G +    +A T  KL+ W+K+ FG +   I+  +  ++  +  + +ED     
Sbjct: 273  MR-----GTDAGINLARTANKLLSWSKQKFGHVAKEIRMCQHQMKVLMESEPSEDNIMHM 327

Query: 141  SELEAELKTLYEMEESFWQQKAGYNWV*GG-KNTKFFHLSMIFRKRKN 1
              L+A +  L + EE +W Q++  +W+  G KNTKFFH     R+++N
Sbjct: 328  RALDARMDELEKREEVYWHQRSRQDWIKSGDKNTKFFHQKASHREQRN 375


>ref|XP_002467234.1| hypothetical protein SORBIDRAFT_01g021750 [Sorghum bicolor]
            gi|241921088|gb|EER94232.1| hypothetical protein
            SORBIDRAFT_01g021750 [Sorghum bicolor]
          Length = 426

 Score =  131 bits (330), Expect(2) = 7e-31
 Identities = 96/340 (28%), Positives = 159/340 (46%), Gaps = 2/340 (0%)
 Frame = -2

Query: 1014 ETKANEKRMGNILKKLKFKGSCVIPALGLKGGLAVFWKEELQLEIVRAMPNHITGI*PGY 835
            ET+ +     +++ +     + +IPA G  GGL + WK++  L IV   PN+I  +    
Sbjct: 39   ETRNSTISRTSLINRFNALDAFIIPAQGQSGGLWLIWKQDFSLTIVDQSPNYIFALCNNN 98

Query: 834  YF*LVFYL-CLW*PCYA*KENSVG*NQNSIPLYSRNILGPWLLFGDFNAIISPDEKIGGN 658
                 F L CL+   +     S+    +   + + N+  P    GD N I+ PDEK G  
Sbjct: 99   LDNRQFGLICLYGDPHHHNTTSIWMQVHDFVVANTNM--PMFCMGDLNNIMHPDEKSGPG 156

Query: 657  SVMNKCMLDFNDFVNDIGLFIDLGFKGPKFTWCNKRTFKSHILERLDRALVTTEWLALFP 478
                + +  F D V + G FIDLG+ GP +TW NKR   +   ERLDR L   EW  ++P
Sbjct: 157  RPDLRRINSFCDSVKECG-FIDLGYSGPAYTWTNKRFSTTPTFERLDRCLANAEWCMMYP 215

Query: 477  EVSVKTMPNYTSVHLSLVINLTHEEPSLKKPFRFYDMWLKDPRCQGIVEEGWSSRDYAPG 298
              +V  +P   S H  ++  L     +  KPFRF + WL +   +   ++ W     +  
Sbjct: 216  RTTVYHLPMLRSDHTPILALLDSNTYNNTKPFRFENWWLMEQDYEETAKKSWQR---STN 272

Query: 297  CNFNRRIANTRKKLIKWNKKVFGDIFYRIKKVKKDLETCLSLDCTEDYYKQRSELEAELK 118
              F+++       L KW +K    +  ++  V+  L    S   ++  +  + +L    +
Sbjct: 273  RLFHQKTKYLAVDLKKWCRKK-PKLSNQLSSVEDLLLEEQSKPPSQQDFHLQMKLAEHHQ 331

Query: 117  TLYEMEESFWQQKAGYNW-V*GGKNTKFFHLSMIFRKRKN 1
             L + +E +  Q+A  NW + G +NT FFH +++ R RKN
Sbjct: 332  QLLDKDEHYHLQRAKKNWAIHGDRNTHFFHQAIVKRTRKN 371



 Score = 29.6 bits (65), Expect(2) = 7e-31
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 1115 TILSWNCRGMGSTTTIQNLNDL 1050
            T+LSWNCRG G +     +N L
Sbjct: 2    TLLSWNCRGSGGSLRSSKMNHL 23


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score =  127 bits (319), Expect = 5e-27
 Identities = 89/340 (26%), Positives = 161/340 (47%), Gaps = 2/340 (0%)
 Frame = -2

Query: 1014 ETKANEKRMGNILKKLKFKGSCVIPALGLKGGLAVFWKEELQLEIVRAMPNHITGI*PGY 835
            ETK     + N++  L F     +  +G  GGLA+ WK+ +Q++++++    I  +    
Sbjct: 36   ETKKRRNYLENVVGHLGFFDLHTVEPIGKSGGLALMWKDSVQIKVLQSDKRLIDALL--I 93

Query: 834  YF*LVFYL-CLW*PCYA*KENSVG*NQNSIPLYSRNILGPWLLFGDFNAIISPDEKIGGN 658
            +    FYL C++      +   +      + L SR+  GPW+L GDFN ++ P EKIGG 
Sbjct: 94   WQDKEFYLTCIYGEPVQAERGELWERLTRLGL-SRS--GPWMLTGDFNELVDPSEKIGGP 150

Query: 657  SVMNKCMLDFNDFVNDIGLFIDLGFKGPKFTWCNKRTFKSHILERLDRALVTTEWLALFP 478
            +      L+F   +N  GL+ ++   G +F+W   R     +  RLDR +    W+ LFP
Sbjct: 151  ARKESSCLEFRQMLNSCGLW-EVNHSGYQFSWYGNRN-DELVQCRLDRTVANQAWMELFP 208

Query: 477  EVSVKTMPNYTSVHLSLVINLTHEEPSLKKPFRFYDMWLKDPRCQGIVEEGWSSRDYAPG 298
            +     +    S H  L+ NL  +       F++   W++    + ++   WS +     
Sbjct: 209  QAKATYLQKICSDHSPLINNLVGDNWRKWAGFKYDKRWVQREGFKDLLCNFWSQQSTKTN 268

Query: 297  CNFNRRIANTRKKLIKWNKKVFGDIFYRIKKVKKDLETCLSLDCTEDYYKQRSELEAELK 118
                 +IA+ R+++ KW +        RI++++  L+        +   ++ + L+ EL 
Sbjct: 269  ALMMEKIASCRREISKWKRVSKPSSAVRIQELQFKLDAATKQIPFD--RRELARLKKELS 326

Query: 117  TLYEMEESFWQQKAGYNWV*GG-KNTKFFHLSMIFRKRKN 1
              Y  EE FWQ+K+   W+  G +NTK+FH +   R+ +N
Sbjct: 327  QEYNNEEQFWQEKSRIMWMRNGDRNTKYFHAATKNRRAQN 366