BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009756
         (1372 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare]    385   e-154
ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group] g...   384   e-154
ref|XP_003578512.1| PREDICTED: transcription initiation factor I...   385   e-154
ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [S...   384   e-153
ref|NP_001149721.1| transcription initiation factor IIB [Zea may...   384   e-152

>dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 312

 Score =  385 bits (989), Expect(2) = e-154
 Identities = 194/234 (82%), Positives = 202/234 (86%)
 Frame = +1

Query: 58  MADMFCPECKKSTEVVLDHSAGDTVCFECGLVLEAHSIDETSEWRTFANESGENDPVRVG 237
           M+D +CP+CKK TEV  DHSAGDTVC ECGLVLEAHS+DETSEWRTFANES +NDPVRVG
Sbjct: 1   MSDTYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60

Query: 238 GPSNPLLTDGGLSTVISKPNGASGDFLSSSLGRWQNRGSNPDRSLIQAFKTIAIMCDRLG 417
           GPSNPLLTDGGLSTVI+KPNGA GDFLSSSLGRWQNRGSNPDRSLI AF+TIA M DRLG
Sbjct: 61  GPSNPLLTDGGLSTVIAKPNGAHGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120

Query: 418 LVATIKDRANEIYKKVEDLKSIRGRNQDAXXXXXXXXXXXXXXXRGRNQDAILAACLYIA 597
           LVATIKDRANEIYKKVEDLKSIRG                      RNQDAILAACLYIA
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRG----------------------RNQDAILAACLYIA 158

Query: 598 CRQEDRPRTVKEICSVANGATKKEVGRAKEFIVKQLEVEMGQSMEMGTIHAGDF 759
           CRQEDRPRTVKEICSVANGATKKE+GRAKEFIVKQLEVEMGQSMEMGTIHAGDF
Sbjct: 159 CRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDF 212



 Score =  188 bits (478), Expect(2) = e-154
 Identities = 92/104 (88%), Positives = 102/104 (98%)
 Frame = +2

Query: 821  IHAGDFLRRFCSHLGMNNAAIKAAQEAVQKSEELDIRRSPISIAAAVIYMITQLSDEKKP 1000
            IHAGDFLRRFCS LGMNN A+KAAQEAVQ+SEELDIRRSPISIAAAVIYMITQLS++KKP
Sbjct: 207  IHAGDFLRRFCSTLGMNNTAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSEDKKP 266

Query: 1001 LRDISLATGVAEGTIRNSYKDLYPYASRLIPSSFAKEDDLRNLC 1132
            L+DISLATGVAEGTIRNSYKDLYPYA+RLIP+S+AKE+DL+NLC
Sbjct: 267  LKDISLATGVAEGTIRNSYKDLYPYAARLIPNSYAKEEDLKNLC 310


>ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group]
           gi|21362998|sp|Q8W0W3.1|TF2B_ORYSJ RecName:
           Full=Transcription initiation factor IIB; AltName:
           Full=General transcription factor TFIIB
           gi|18481632|gb|AAL73491.1|AF464908_1 general
           transcription factor TFIIB [Oryza sativa]
           gi|50725809|dbj|BAD33339.1| Transcription initiation
           factor IIB [Oryza sativa Japonica Group]
           gi|50726577|dbj|BAD34211.1| Transcription initiation
           factor IIB [Oryza sativa Japonica Group]
           gi|113632008|dbj|BAF25689.1| Os09g0534800 [Oryza sativa
           Japonica Group] gi|125564497|gb|EAZ09877.1| hypothetical
           protein OsI_32170 [Oryza sativa Indica Group]
           gi|125606444|gb|EAZ45480.1| hypothetical protein
           OsJ_30135 [Oryza sativa Japonica Group]
           gi|347737122|gb|AEP20532.1| transcription factor [Oryza
           sativa Japonica Group]
          Length = 312

 Score =  384 bits (986), Expect(2) = e-154
 Identities = 193/234 (82%), Positives = 202/234 (86%)
 Frame = +1

Query: 58  MADMFCPECKKSTEVVLDHSAGDTVCFECGLVLEAHSIDETSEWRTFANESGENDPVRVG 237
           M+D FCP+CKK TEV  DHSAGDTVC ECGLVLEAHS+DETSEWRTFANES +NDPVRVG
Sbjct: 1   MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60

Query: 238 GPSNPLLTDGGLSTVISKPNGASGDFLSSSLGRWQNRGSNPDRSLIQAFKTIAIMCDRLG 417
           GP+NPLLTDGGLSTVI+KPNGA G+FLSSSLGRWQNRGSNPDRSLI AF+TIA M DRLG
Sbjct: 61  GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120

Query: 418 LVATIKDRANEIYKKVEDLKSIRGRNQDAXXXXXXXXXXXXXXXRGRNQDAILAACLYIA 597
           LVATIKDRANEIYKKVEDLKSIRG                      RNQDAILAACLYIA
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRG----------------------RNQDAILAACLYIA 158

Query: 598 CRQEDRPRTVKEICSVANGATKKEVGRAKEFIVKQLEVEMGQSMEMGTIHAGDF 759
           CRQEDRPRTVKEICSVANGATKKE+GRAKEFIVKQLEVEMGQSMEMGTIHAGDF
Sbjct: 159 CRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDF 212



 Score =  189 bits (481), Expect(2) = e-154
 Identities = 93/104 (89%), Positives = 102/104 (98%)
 Frame = +2

Query: 821  IHAGDFLRRFCSHLGMNNAAIKAAQEAVQKSEELDIRRSPISIAAAVIYMITQLSDEKKP 1000
            IHAGDFLRRFCS LGMNN A+KAAQEAVQ+SEELDIRRSPISIAAAVIYMITQLSD+KKP
Sbjct: 207  IHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSDDKKP 266

Query: 1001 LRDISLATGVAEGTIRNSYKDLYPYASRLIPSSFAKEDDLRNLC 1132
            L+DISLATGVAEGTIRNSYKDLYPYASRLIP+++AKE+DL+NLC
Sbjct: 267  LKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLC 310


>ref|XP_003578512.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
           distachyon]
          Length = 312

 Score =  385 bits (988), Expect(2) = e-154
 Identities = 194/234 (82%), Positives = 202/234 (86%)
 Frame = +1

Query: 58  MADMFCPECKKSTEVVLDHSAGDTVCFECGLVLEAHSIDETSEWRTFANESGENDPVRVG 237
           M+D FCP+CKK TEV  DHSAGDTVC ECGLVLEAHS+DETSEWRTFANES +NDPVRVG
Sbjct: 1   MSDTFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60

Query: 238 GPSNPLLTDGGLSTVISKPNGASGDFLSSSLGRWQNRGSNPDRSLIQAFKTIAIMCDRLG 417
           GPSNPLLTDGGLSTVI+KPNGA G+FLSSSLGRWQNRGSNPDRSLI AF+TIA M DRLG
Sbjct: 61  GPSNPLLTDGGLSTVIAKPNGAHGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120

Query: 418 LVATIKDRANEIYKKVEDLKSIRGRNQDAXXXXXXXXXXXXXXXRGRNQDAILAACLYIA 597
           LVATIKDRANEIYKKVEDLKSIRG                      RNQDAILAACLYIA
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRG----------------------RNQDAILAACLYIA 158

Query: 598 CRQEDRPRTVKEICSVANGATKKEVGRAKEFIVKQLEVEMGQSMEMGTIHAGDF 759
           CRQEDRPRTVKEICSVANGATKKE+GRAKEFIVKQLEVEMGQSMEMGTIHAGDF
Sbjct: 159 CRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDF 212



 Score =  188 bits (478), Expect(2) = e-154
 Identities = 92/104 (88%), Positives = 102/104 (98%)
 Frame = +2

Query: 821  IHAGDFLRRFCSHLGMNNAAIKAAQEAVQKSEELDIRRSPISIAAAVIYMITQLSDEKKP 1000
            IHAGDFLRRFCS LGMNN A+KAAQEAVQ+SEELDIRRSPISIAAAVIYMITQLS++KKP
Sbjct: 207  IHAGDFLRRFCSTLGMNNTAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSEDKKP 266

Query: 1001 LRDISLATGVAEGTIRNSYKDLYPYASRLIPSSFAKEDDLRNLC 1132
            L+DISLATGVAEGTIRNSYKDLYPYASRLIP+++AKE+DL+NLC
Sbjct: 267  LKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLC 310


>ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
           gi|241923949|gb|EER97093.1| hypothetical protein
           SORBIDRAFT_02g031020 [Sorghum bicolor]
          Length = 312

 Score =  384 bits (987), Expect(2) = e-153
 Identities = 193/234 (82%), Positives = 202/234 (86%)
 Frame = +1

Query: 58  MADMFCPECKKSTEVVLDHSAGDTVCFECGLVLEAHSIDETSEWRTFANESGENDPVRVG 237
           M+D FCP+CKK TEV  DHSAGDTVC ECGLVLEAHS+DETSEWRTFANES +NDPVRVG
Sbjct: 1   MSDSFCPDCKKQTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60

Query: 238 GPSNPLLTDGGLSTVISKPNGASGDFLSSSLGRWQNRGSNPDRSLIQAFKTIAIMCDRLG 417
           GP+NPLLTDGGLSTVI+KPNGA G+FLSSSLGRWQNRGSNPDRSLI AF+TIA M DRLG
Sbjct: 61  GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120

Query: 418 LVATIKDRANEIYKKVEDLKSIRGRNQDAXXXXXXXXXXXXXXXRGRNQDAILAACLYIA 597
           LVATIKDRANEIYKKVEDLKSIRG                      RNQDAILAACLYIA
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRG----------------------RNQDAILAACLYIA 158

Query: 598 CRQEDRPRTVKEICSVANGATKKEVGRAKEFIVKQLEVEMGQSMEMGTIHAGDF 759
           CRQEDRPRTVKEICSVANGATKKE+GRAKEFIVKQLEVEMGQSMEMGTIHAGDF
Sbjct: 159 CRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDF 212



 Score =  187 bits (474), Expect(2) = e-153
 Identities = 91/104 (87%), Positives = 102/104 (98%)
 Frame = +2

Query: 821  IHAGDFLRRFCSHLGMNNAAIKAAQEAVQKSEELDIRRSPISIAAAVIYMITQLSDEKKP 1000
            IHAGDFLRRFCS LGMNN A+KAAQEAVQ+SEELDIRRSPISIAAAVIYMITQLS++KKP
Sbjct: 207  IHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSEDKKP 266

Query: 1001 LRDISLATGVAEGTIRNSYKDLYPYASRLIPSSFAKEDDLRNLC 1132
            L+DISLATGVAEGTIRNSYKDLYPYA+RLIP+++AKE+DL+NLC
Sbjct: 267  LKDISLATGVAEGTIRNSYKDLYPYAARLIPNTYAKEEDLKNLC 310


>ref|NP_001149721.1| transcription initiation factor IIB [Zea mays]
           gi|195629762|gb|ACG36522.1| transcription initiation
           factor IIB [Zea mays] gi|414590059|tpg|DAA40630.1| TPA:
           transcription initiation factor IIB [Zea mays]
          Length = 312

 Score =  384 bits (985), Expect(2) = e-152
 Identities = 192/234 (82%), Positives = 202/234 (86%)
 Frame = +1

Query: 58  MADMFCPECKKSTEVVLDHSAGDTVCFECGLVLEAHSIDETSEWRTFANESGENDPVRVG 237
           M+D +CP+CKK TEV  DHSAGDTVC ECGLVLEAHS+DETSEWRTFANES +NDPVRVG
Sbjct: 1   MSDSYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60

Query: 238 GPSNPLLTDGGLSTVISKPNGASGDFLSSSLGRWQNRGSNPDRSLIQAFKTIAIMCDRLG 417
           GPSNPLLTDGGLSTVI+KPNGA GDFLSSSLGRWQNRGSNPDRSLI AF+TIA M DRLG
Sbjct: 61  GPSNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120

Query: 418 LVATIKDRANEIYKKVEDLKSIRGRNQDAXXXXXXXXXXXXXXXRGRNQDAILAACLYIA 597
           LVATIKDRANEI+KK+EDLKSIRG                      RNQDAILAACLYIA
Sbjct: 121 LVATIKDRANEIFKKIEDLKSIRG----------------------RNQDAILAACLYIA 158

Query: 598 CRQEDRPRTVKEICSVANGATKKEVGRAKEFIVKQLEVEMGQSMEMGTIHAGDF 759
           CRQEDRPRTVKEICSVANGATKKE+GRAKEFIVKQLEVEMGQSMEMGTIHAGDF
Sbjct: 159 CRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDF 212



 Score =  182 bits (462), Expect(2) = e-152
 Identities = 89/104 (85%), Positives = 100/104 (96%)
 Frame = +2

Query: 821  IHAGDFLRRFCSHLGMNNAAIKAAQEAVQKSEELDIRRSPISIAAAVIYMITQLSDEKKP 1000
            IHAGDFLRRFCS LGM N A+ AA+EAVQ+SEELDIRRSPISIAAAVIYMITQLS++KKP
Sbjct: 207  IHAGDFLRRFCSTLGMTNQAVNAAKEAVQRSEELDIRRSPISIAAAVIYMITQLSEDKKP 266

Query: 1001 LRDISLATGVAEGTIRNSYKDLYPYASRLIPSSFAKEDDLRNLC 1132
            L+DISLATGVAEGTIRNSYKDLYPYASRLIP+++AKE+DL+NLC
Sbjct: 267  LKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLC 310