BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009653
         (290 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containi...   105   4e-21
emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]   105   4e-21
ref|XP_003599019.1| Pentatricopeptide repeat-containing protein ...    95   7e-18
ref|XP_002528456.1| pentatricopeptide repeat-containing protein,...    92   4e-17
ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containi...    91   8e-17

>ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  105 bits (262), Expect = 4e-21
 Identities = 49/96 (51%), Positives = 66/96 (68%)
 Frame = +1

Query: 1   VSWGTMMAGYVHNARFGETLKLFGRLRIGNLKLNQXXXXXXXXXXXEMGDMDKGKEIHHY 180
           VSWGTMMAGY HN  F E L+LF ++++GN+++N+           E  D++KGKEIH  
Sbjct: 295 VSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGC 354

Query: 181 AIEDGIDMDVSVATSVMTMYAKCGEPEKAKHMFVGI 288
           A++  ID D+ VAT +M MYAKCGE EKAK +F G+
Sbjct: 355 ALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGL 390


>emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  105 bits (262), Expect = 4e-21
 Identities = 49/96 (51%), Positives = 66/96 (68%)
 Frame = +1

Query: 1   VSWGTMMAGYVHNARFGETLKLFGRLRIGNLKLNQXXXXXXXXXXXEMGDMDKGKEIHHY 180
           VSWGTMMAGY HN  F E L+LF ++++GN+++N+           E  D++KGKEIH  
Sbjct: 295 VSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGC 354

Query: 181 AIEDGIDMDVSVATSVMTMYAKCGEPEKAKHMFVGI 288
           A++  ID D+ VAT +M MYAKCGE EKAK +F G+
Sbjct: 355 ALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGL 390


>ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355488067|gb|AES69270.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 944

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 44/96 (45%), Positives = 66/96 (68%)
 Frame = +1

Query: 1   VSWGTMMAGYVHNARFGETLKLFGRLRIGNLKLNQXXXXXXXXXXXEMGDMDKGKEIHHY 180
           VSW TMMAGYV N  + E L+L  ++R GN+K+N+           EM D++KGKEI++Y
Sbjct: 265 VSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNY 324

Query: 181 AIEDGIDMDVSVATSVMTMYAKCGEPEKAKHMFVGI 288
           A++ G+  D+ VAT ++ MYAKCGE +KA+ +F+ +
Sbjct: 325 ALQMGLMSDIVVATPIVCMYAKCGELKKARELFLSL 360


>ref|XP_002528456.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532132|gb|EEF33939.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 664

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 44/96 (45%), Positives = 60/96 (62%)
 Frame = +1

Query: 1   VSWGTMMAGYVHNARFGETLKLFGRLRIGNLKLNQXXXXXXXXXXXEMGDMDKGKEIHHY 180
           +SW TMMAGY HN  F E L LF  ++  N +LN+           ++ D  +GKEI  +
Sbjct: 180 ISWRTMMAGYAHNECFFEVLDLFDYMKKNNFRLNKVSVASALLAAADVRDSGRGKEICEF 239

Query: 181 AIEDGIDMDVSVATSVMTMYAKCGEPEKAKHMFVGI 288
           A + GID DVS+ T++MTMYAKCG  +KAK +F G+
Sbjct: 240 ARQQGIDSDVSITTAMMTMYAKCGNLDKAKQLFQGL 275



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 26/93 (27%), Positives = 46/93 (49%)
 Frame = +1

Query: 1   VSWGTMMAGYVHNARFGETLKLFGRLRIGNLKLNQXXXXXXXXXXXEMGDMDKGKEIHHY 180
           VSW  ++AGYVHN    E   LF ++++ + + N             +  + +G  +H  
Sbjct: 484 VSWNALIAGYVHNEHAKEAFSLFCQMKLEHFQPNLVTFVSVFPAVARLSALKEGMALHAC 543

Query: 181 AIEDGIDMDVSVATSVMTMYAKCGEPEKAKHMF 279
            +  G   +V V   ++ MYAKCG+   ++H+F
Sbjct: 544 IMRMGFQSNVLVGNCLIDMYAKCGQLHNSEHLF 576


>ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 40/96 (41%), Positives = 64/96 (66%)
 Frame = +1

Query: 1   VSWGTMMAGYVHNARFGETLKLFGRLRIGNLKLNQXXXXXXXXXXXEMGDMDKGKEIHHY 180
           +SW TMMAGYVH+  + E L+L   ++  ++K+N+           E  D++KGKE+H+Y
Sbjct: 294 ISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNY 353

Query: 181 AIEDGIDMDVSVATSVMTMYAKCGEPEKAKHMFVGI 288
           A++ G+  D+ VAT +++MYAKCGE +KAK  F+ +
Sbjct: 354 ALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSL 389