BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009620
         (2077 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281446.1| PREDICTED: riboflavin biosynthesis protein r...   733   0.0  
ref|XP_002534352.1| GTP cyclohydrolase II, putative [Ricinus com...   714   0.0  
ref|XP_003547454.1| PREDICTED: riboflavin biosynthesis protein r...   707   0.0  
ref|XP_002299894.1| predicted protein [Populus trichocarpa] gi|2...   702   0.0  
ref|XP_003568299.1| PREDICTED: riboflavin biosynthesis protein r...   666   0.0  

>ref|XP_002281446.1| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic
            [Vitis vinifera] gi|297746140|emb|CBI16196.3| unnamed
            protein product [Vitis vinifera]
          Length = 519

 Score =  733 bits (1893), Expect = 0.0
 Identities = 380/519 (73%), Positives = 428/519 (82%), Gaps = 4/519 (0%)
 Frame = -3

Query: 1997 MICLVLQRPLAPQIAINSCFHCSIASSQSLIIR----LNRNNFLKYGCQSIDVNRVGGGD 1830
            M  ++   PL P I I+S F  S+A+ QS+ +     L+R+ +    C ++ V+ VG G+
Sbjct: 1    MDSVLFPHPLFPHIFISSSFPRSLAAPQSIGVGIGVGLSRHRWCST-CWAVGVSGVGAGN 59

Query: 1829 LLDEGSVLSNQNGSILESLNESTKATFRTLNAEITQETIDFFVSDAKGDPDCPTEGFSSI 1650
            + D+  + +N+NGS+L +L   T A F TL+AEIT ETIDFFVSDA+GDPD P+EGFSSI
Sbjct: 60   VFDKIPLKANENGSVLGALEGPTSAPFGTLDAEITPETIDFFVSDAEGDPDSPSEGFSSI 119

Query: 1649 EQALNTLPQGKFVIAVDDEKEDVEGNLVMAASLIKPQTMSFMVKHGSGIVSVGMKEEDLE 1470
            EQALNTL QGKFVI VDDE    EGNLVMAASL  P+ M+FMVKHGSGIVSVGMKEE LE
Sbjct: 120  EQALNTLRQGKFVIVVDDEIGKAEGNLVMAASLTSPRDMAFMVKHGSGIVSVGMKEEHLE 179

Query: 1469 RXXXXXXXXXXXXXXXXXPAYTVTVDAKVGVSTGVSASDRAKTVLALSSSHSKPEDFRRP 1290
            R                 P +T+TVDAK G STGVSASDRAKTVLALSS  S P+DFRRP
Sbjct: 180  RLKLPLMSPDSEDKDSSAPTFTITVDAKAGTSTGVSASDRAKTVLALSSPISTPQDFRRP 239

Query: 1289 GHVFPLMYRNGGVLSRAGHTEASVDLVSLAGLPPISALSAIIDAEDGSIARLPFLRKMAL 1110
            GHVFPL YR GGVL RAGHTEASVDLV LAGL PIS LSAI+D +DGSIA LP LRK+AL
Sbjct: 240  GHVFPLKYREGGVLRRAGHTEASVDLVMLAGLQPISVLSAIVDGDDGSIATLPSLRKLAL 299

Query: 1109 EYGLPIVSITDLIRYRRKREKLVERIAVSRLPTKWGLFQAYCYRSKLDGTEHIAIVKGSI 930
            E+ +P+VSITDLIRYRRKREKLVER A+SRLPTKWGLFQAYCYRSKLDGTEH+AIVKGSI
Sbjct: 300  EHSIPMVSITDLIRYRRKREKLVERTAISRLPTKWGLFQAYCYRSKLDGTEHVAIVKGSI 359

Query: 929  RDGQDILVRVHSECLTGDIFGSARCDCGSQLALAVQVVEQAGRGVVLYLRGHEGRGIGLG 750
              GQD+LVRVHSECLTGDIFGSARCDCG+QL LA+Q+VEQAGRGVV+YLRGHEGRGIGLG
Sbjct: 360  GQGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQLVEQAGRGVVVYLRGHEGRGIGLG 419

Query: 749  HKLMAYNLQDQGHDTVEANLELGFSADARDYGIGAQILRDIGVRTMHLMTNNPAKFTGLK 570
            HKL AYNLQD+GHDTVEANLELG + DAR+YGIGAQILRDIGVRTM LMTNNPAKFTGLK
Sbjct: 420  HKLRAYNLQDEGHDTVEANLELGLAVDAREYGIGAQILRDIGVRTMQLMTNNPAKFTGLK 479

Query: 569  GYGLAVVGRVPVISPITEENKRYLETKRTKMGHIYGSDI 453
            GYGLAVVGRVPV++PITEENK+YLETKRTKMGHIYGSDI
Sbjct: 480  GYGLAVVGRVPVLTPITEENKKYLETKRTKMGHIYGSDI 518


>ref|XP_002534352.1| GTP cyclohydrolase II, putative [Ricinus communis]
            gi|223525444|gb|EEF28032.1| GTP cyclohydrolase II,
            putative [Ricinus communis]
          Length = 538

 Score =  714 bits (1842), Expect = 0.0
 Identities = 359/505 (71%), Positives = 412/505 (81%), Gaps = 1/505 (0%)
 Frame = -3

Query: 1964 PQIAINSCFHCSIASS-QSLIIRLNRNNFLKYGCQSIDVNRVGGGDLLDEGSVLSNQNGS 1788
            P I INS FH  + S+  S  I   ++ F    C +  V  +G G+L D+ S   ++NGS
Sbjct: 12   PHIFINSSFHKQLFSAPHSTGIGPYKHKFSSPTCWATGVTGIGAGNLSDDSSSKGSENGS 71

Query: 1787 ILESLNESTKATFRTLNAEITQETIDFFVSDAKGDPDCPTEGFSSIEQALNTLPQGKFVI 1608
            +L S +EST A F TL+AEIT ETIDFFVSDA+GDPDCPT G+SSIEQALNTL QGKFVI
Sbjct: 72   LLGSFHESTSAPFGTLDAEITPETIDFFVSDAEGDPDCPTPGYSSIEQALNTLRQGKFVI 131

Query: 1607 AVDDEKEDVEGNLVMAASLIKPQTMSFMVKHGSGIVSVGMKEEDLERXXXXXXXXXXXXX 1428
             VDDE  D+EGN+VMAASL  P+ ++FMVKHGSGIVSV M  +DL R             
Sbjct: 132  VVDDENGDIEGNIVMAASLTSPKQVAFMVKHGSGIVSVSMTVDDLNRLKLPLMSPESEDE 191

Query: 1427 XXXXPAYTVTVDAKVGVSTGVSASDRAKTVLALSSSHSKPEDFRRPGHVFPLMYRNGGVL 1248
                P +T TVDA+ G STGVSA+DRAKTV+AL+S  SKPEDFRRPGHVFPL YRNGGVL
Sbjct: 192  DSSAPTFTTTVDARTGTSTGVSAADRAKTVVALASPESKPEDFRRPGHVFPLKYRNGGVL 251

Query: 1247 SRAGHTEASVDLVSLAGLPPISALSAIIDAEDGSIARLPFLRKMALEYGLPIVSITDLIR 1068
             RAGHTEAS+DL+ LAGL P+S LSAI+D +DGS+A L  L K+A EY +P+VSITD+IR
Sbjct: 252  RRAGHTEASIDLLILAGLRPVSVLSAIVDPDDGSMASLSSLTKLASEYSIPVVSITDIIR 311

Query: 1067 YRRKREKLVERIAVSRLPTKWGLFQAYCYRSKLDGTEHIAIVKGSIRDGQDILVRVHSEC 888
            YRRKRE LVER AVSRLPTKWGLFQAYCYRSKLDGTEHIAIVKG I DG+D+LVRVHSEC
Sbjct: 312  YRRKRENLVERTAVSRLPTKWGLFQAYCYRSKLDGTEHIAIVKGDIGDGEDVLVRVHSEC 371

Query: 887  LTGDIFGSARCDCGSQLALAVQVVEQAGRGVVLYLRGHEGRGIGLGHKLMAYNLQDQGHD 708
            LTGDIFGS RCDCG+QL LA+Q++EQAGRGVV+YLRGHEGRGIGLGHKL AYNLQDQGHD
Sbjct: 372  LTGDIFGSGRCDCGNQLNLAMQLIEQAGRGVVIYLRGHEGRGIGLGHKLRAYNLQDQGHD 431

Query: 707  TVEANLELGFSADARDYGIGAQILRDIGVRTMHLMTNNPAKFTGLKGYGLAVVGRVPVIS 528
            TV+AN+ELG + DAR+YGIGAQILRD+ VRTM LMTNNPAKFTGLKGYGLAV+GRVPV++
Sbjct: 432  TVQANIELGLAVDAREYGIGAQILRDVRVRTMRLMTNNPAKFTGLKGYGLAVIGRVPVLT 491

Query: 527  PITEENKRYLETKRTKMGHIYGSDI 453
            PITEENK+YLETKRTKMGHIYGSD+
Sbjct: 492  PITEENKKYLETKRTKMGHIYGSDL 516


>ref|XP_003547454.1| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like
            [Glycine max]
          Length = 533

 Score =  707 bits (1824), Expect = 0.0
 Identities = 357/509 (70%), Positives = 413/509 (81%), Gaps = 2/509 (0%)
 Frame = -3

Query: 1973 PLAPQIAINSCFHCSIASSQSLIIRLNRNNFLKYGCQSIDVNRVGGGDLLDEGSVLSNQN 1794
            PL   +  +S  H S     S  + L +N      C +  V      DL D+ ++  N+N
Sbjct: 9    PLISHVITSSSLHRSYGIHHSARLGLWKNKVWNSACCAAGVE-----DLFDDSNLKRNEN 63

Query: 1793 GSILESLN--ESTKATFRTLNAEITQETIDFFVSDAKGDPDCPTEGFSSIEQALNTLPQG 1620
            GS+L +LN  ES+ A+F TL+AE+T ET DFFVSDA+GDPDCP++G+SSIE+ALN L QG
Sbjct: 64   GSLLGALNNNESSSASFETLDAELTPETTDFFVSDAEGDPDCPSKGYSSIERALNALRQG 123

Query: 1619 KFVIAVDDEKEDVEGNLVMAASLIKPQTMSFMVKHGSGIVSVGMKEEDLERXXXXXXXXX 1440
            KFVI VDDE  D+EGNL+MAASL  P+ ++FM+KHGSGIVSVGMKEEDL+R         
Sbjct: 124  KFVIVVDDENGDIEGNLIMAASLTSPKDIAFMIKHGSGIVSVGMKEEDLQRLNLPLMSPE 183

Query: 1439 XXXXXXXXPAYTVTVDAKVGVSTGVSASDRAKTVLALSSSHSKPEDFRRPGHVFPLMYRN 1260
                    P +T+TVD K G STGVSA+DRAKTVLALSS  SK EDFR+PGHVFPL YRN
Sbjct: 184  TEDEDSSAPTFTITVDVKSGTSTGVSAADRAKTVLALSSPESKSEDFRKPGHVFPLKYRN 243

Query: 1259 GGVLSRAGHTEASVDLVSLAGLPPISALSAIIDAEDGSIARLPFLRKMALEYGLPIVSIT 1080
            GGVL RAGHTEAS+DLV+LAGLPPIS LSA++D  DGS+  L  LRK+A EY LPIVSIT
Sbjct: 244  GGVLRRAGHTEASLDLVALAGLPPISVLSALVDENDGSMQSLLNLRKLASEYTLPIVSIT 303

Query: 1079 DLIRYRRKREKLVERIAVSRLPTKWGLFQAYCYRSKLDGTEHIAIVKGSIRDGQDILVRV 900
            DLIRYRRKREKLVER +VSRLPTKWGLFQAYCY SKLDGTEH+A+VKG + DGQD+LVRV
Sbjct: 304  DLIRYRRKREKLVERTSVSRLPTKWGLFQAYCYSSKLDGTEHVAVVKGDMGDGQDVLVRV 363

Query: 899  HSECLTGDIFGSARCDCGSQLALAVQVVEQAGRGVVLYLRGHEGRGIGLGHKLMAYNLQD 720
            HSECLTGDIFGSARCDCG+QL LA++++E+AGRGVV+YLRGHEGRGIGLGHKL AYNLQD
Sbjct: 364  HSECLTGDIFGSARCDCGNQLDLAMRLIEEAGRGVVVYLRGHEGRGIGLGHKLKAYNLQD 423

Query: 719  QGHDTVEANLELGFSADARDYGIGAQILRDIGVRTMHLMTNNPAKFTGLKGYGLAVVGRV 540
            QGHDTV+AN+ELG + DAR+YGIGAQILRDIGVRTM LMTNNPAKF GLKGYGLAVVGRV
Sbjct: 424  QGHDTVQANIELGLAVDAREYGIGAQILRDIGVRTMRLMTNNPAKFVGLKGYGLAVVGRV 483

Query: 539  PVISPITEENKRYLETKRTKMGHIYGSDI 453
            PV++PITEENKRYLETKRTKMGHIYGSD+
Sbjct: 484  PVLTPITEENKRYLETKRTKMGHIYGSDL 512


>ref|XP_002299894.1| predicted protein [Populus trichocarpa] gi|222847152|gb|EEE84699.1|
            predicted protein [Populus trichocarpa]
          Length = 441

 Score =  702 bits (1813), Expect = 0.0
 Identities = 348/439 (79%), Positives = 386/439 (87%)
 Frame = -3

Query: 1769 ESTKATFRTLNAEITQETIDFFVSDAKGDPDCPTEGFSSIEQALNTLPQGKFVIAVDDEK 1590
            ES  A F TL+AEIT ETIDFFVSDA+GDPDCPTEG+SSIEQALNTL +GKFVI VDDE 
Sbjct: 1    ESASAPFLTLDAEITPETIDFFVSDAEGDPDCPTEGYSSIEQALNTLREGKFVIVVDDEN 60

Query: 1589 EDVEGNLVMAASLIKPQTMSFMVKHGSGIVSVGMKEEDLERXXXXXXXXXXXXXXXXXPA 1410
             D+EGNL+MAASL  PQ +SF++K+GSGIVSVGMKEEDLER                 P 
Sbjct: 61   GDIEGNLIMAASLTSPQHVSFLIKNGSGIVSVGMKEEDLERLKLPLMSPETENEDSSAPT 120

Query: 1409 YTVTVDAKVGVSTGVSASDRAKTVLALSSSHSKPEDFRRPGHVFPLMYRNGGVLSRAGHT 1230
            +T+TVDAK G  TGVSASDRAKTVLALSS  +KPEDFRRPGHVFPL YRNGGVL RAGHT
Sbjct: 121  FTITVDAKSGTCTGVSASDRAKTVLALSSPETKPEDFRRPGHVFPLKYRNGGVLRRAGHT 180

Query: 1229 EASVDLVSLAGLPPISALSAIIDAEDGSIARLPFLRKMALEYGLPIVSITDLIRYRRKRE 1050
            EASVDLV LAGLPP+S LSAIID EDGSIA L  +RK+A+E+ +PIVSITDLIRYRRKRE
Sbjct: 181  EASVDLVMLAGLPPVSVLSAIIDPEDGSIASLADIRKLAMEHNIPIVSITDLIRYRRKRE 240

Query: 1049 KLVERIAVSRLPTKWGLFQAYCYRSKLDGTEHIAIVKGSIRDGQDILVRVHSECLTGDIF 870
             LVER A+SRLPTKWGLF+AYCYRSKL+GTEH+AIVKG+I DGQD+LVRVHSECLTGDIF
Sbjct: 241  YLVERSAISRLPTKWGLFEAYCYRSKLEGTEHVAIVKGNIGDGQDVLVRVHSECLTGDIF 300

Query: 869  GSARCDCGSQLALAVQVVEQAGRGVVLYLRGHEGRGIGLGHKLMAYNLQDQGHDTVEANL 690
            GSARCDCG+QL LA+Q++EQAGRG+V+YLRGHEGRGIGLGHKL AYNLQDQGHDTV+AN+
Sbjct: 301  GSARCDCGNQLDLAMQLIEQAGRGIVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANI 360

Query: 689  ELGFSADARDYGIGAQILRDIGVRTMHLMTNNPAKFTGLKGYGLAVVGRVPVISPITEEN 510
            ELG + DAR+YGIGAQILRDIGVRTM LMTNNPAKFTGLKGYGLAV+GRVPV +PITEEN
Sbjct: 361  ELGLAVDAREYGIGAQILRDIGVRTMRLMTNNPAKFTGLKGYGLAVIGRVPVFTPITEEN 420

Query: 509  KRYLETKRTKMGHIYGSDI 453
            KRYLETKRTKMGH+YGSDI
Sbjct: 421  KRYLETKRTKMGHVYGSDI 439


>ref|XP_003568299.1| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like
            [Brachypodium distachyon]
          Length = 527

 Score =  666 bits (1719), Expect = 0.0
 Identities = 341/515 (66%), Positives = 409/515 (79%)
 Frame = -3

Query: 1997 MICLVLQRPLAPQIAINSCFHCSIASSQSLIIRLNRNNFLKYGCQSIDVNRVGGGDLLDE 1818
            M C++L   L+    +N+  H    +  ++   + R  +L+  C +I       G L D 
Sbjct: 1    MDCVLLSSHLSSHAVVNARIHQGSVNLNNIGFAVFRKGWLQLRCYAIG----DAGSLNDP 56

Query: 1817 GSVLSNQNGSILESLNESTKATFRTLNAEITQETIDFFVSDAKGDPDCPTEGFSSIEQAL 1638
              +  N+NG +L+ LN S  ++F TL AEITQET DFFVSDA+GDPD PTEGFSSIE A+
Sbjct: 57   --LKENKNGPVLQGLNGSG-SSFTTLGAEITQETGDFFVSDAEGDPDKPTEGFSSIEDAI 113

Query: 1637 NTLPQGKFVIAVDDEKEDVEGNLVMAASLIKPQTMSFMVKHGSGIVSVGMKEEDLERXXX 1458
            N+L +GKFVIAVDDE  D EG+LV+AASL   ++++FM+++GSGI+SVGM EEDLER   
Sbjct: 114  NSLREGKFVIAVDDENGDNEGDLVIAASLASAESIAFMIRNGSGIISVGMHEEDLERLMI 173

Query: 1457 XXXXXXXXXXXXXXPAYTVTVDAKVGVSTGVSASDRAKTVLALSSSHSKPEDFRRPGHVF 1278
                           A TVTVDA+VG+STGVSA+DRAKT+LAL+S  SKP D RRPGH+F
Sbjct: 174  PMMSPVTEIGDISAAASTVTVDARVGISTGVSAADRAKTILALASPDSKPSDLRRPGHIF 233

Query: 1277 PLMYRNGGVLSRAGHTEASVDLVSLAGLPPISALSAIIDAEDGSIARLPFLRKMALEYGL 1098
            PL YRNGGVL RAGHTEASVDLV+LAGL P+S LS IID +DGS+A  P L++MA E+ +
Sbjct: 234  PLKYRNGGVLKRAGHTEASVDLVALAGLRPVSVLSTIIDPKDGSMAGTPALKQMASEHDI 293

Query: 1097 PIVSITDLIRYRRKREKLVERIAVSRLPTKWGLFQAYCYRSKLDGTEHIAIVKGSIRDGQ 918
            PIVSI DLIRYRRKREKLVE IAVSRLPTKWGLF+AYCY+SKLDGTEHIA+ KG I DG+
Sbjct: 294  PIVSIADLIRYRRKREKLVELIAVSRLPTKWGLFRAYCYQSKLDGTEHIAVAKGDIGDGE 353

Query: 917  DILVRVHSECLTGDIFGSARCDCGSQLALAVQVVEQAGRGVVLYLRGHEGRGIGLGHKLM 738
            D+LVRVHSECLTGDI GSARCDCG QL LA++++E+AGRGV++YLRGHEGRGIGLG KL 
Sbjct: 354  DVLVRVHSECLTGDILGSARCDCGEQLDLAMRLIEKAGRGVLVYLRGHEGRGIGLGQKLR 413

Query: 737  AYNLQDQGHDTVEANLELGFSADARDYGIGAQILRDIGVRTMHLMTNNPAKFTGLKGYGL 558
            AYNLQDQG DTVEAN+ELG + D+R+YGIGAQILRDIGVRTM LMTNNPAKF GLKGYGL
Sbjct: 414  AYNLQDQGSDTVEANVELGLAIDSREYGIGAQILRDIGVRTMRLMTNNPAKFVGLKGYGL 473

Query: 557  AVVGRVPVISPITEENKRYLETKRTKMGHIYGSDI 453
            AVVGRVPV+SPIT+EN++YLETKRTKMGH+YGSD+
Sbjct: 474  AVVGRVPVMSPITKENQKYLETKRTKMGHVYGSDL 508