BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009603
         (542 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebenn...    88   7e-16
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    80   2e-13
gb|AAD37019.2| putative non-LTR retrolelement reverse transcript...    80   3e-13
ref|XP_002335785.1| predicted protein [Populus trichocarpa] gi|2...    79   4e-13
ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|2...    76   4e-12

>gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebennensis]
          Length = 464

 Score = 88.2 bits (217), Expect = 7e-16
 Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 1/133 (0%)
 Frame = +1

Query: 58  KNDLISWNKDK-GRTITRKQDAKKELEEIQTLLQTRPLDQQLITRERMTTKIYVKAAVEE 234
           K  L  WNK+  G    RK    +E++ +Q  L+    D  L+ +E +  K +     +E
Sbjct: 247 KEKLKKWNKEVFGNIQQRKDKLVQEIQAVQDFLEHNQTDD-LLNKEDVLIKEFEVVLEQE 305

Query: 235 ESECKQKSREQVVTLGDSNTKYFFNSVKMRRMTNRITCLKDQQGRMLEEISEIGE*CVKY 414
           E    QKSRE+ + LGD NTKYF  S  +RR  N+I  LKD +G+ +EE  E+ +  V+Y
Sbjct: 306 EIVWFQKSREKWIALGDRNTKYFHTSTIIRRRRNQIEMLKDDEGKWVEEPEELAKMAVEY 365

Query: 415 YQELYSPEHMEEI 453
           YQ+LYS E ++ I
Sbjct: 366 YQKLYSVEDVDSI 378


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 1/166 (0%)
 Frame = +1

Query: 46  LRQVKNDLISWNKDK-GRTITRKQDAKKELEEIQTLLQTRPLDQQLITRERMTTKIYVKA 222
           L +++  L  WNK+  G    RK+    +L+ +Q LL+    D  L+ +E    K +   
Sbjct: 85  LNRLRWQLKKWNKEVFGNIHVRKEKVVSDLKAVQDLLEVVQTDD-LLMKEDTLLKEFDVL 143

Query: 223 AVEEESECKQKSREQVVTLGDSNTKYFFNSVKMRRMTNRITCLKDQQGRMLEEISEIGE* 402
             +EE+   QKSRE+++ LGD NT +F  S  +RR  NRI  LKD + R + E   + + 
Sbjct: 144 LHQEETLWFQKSREKLLALGDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKL 203

Query: 403 CVKYYQELYSPEHMEEIDFTMMNDIQVEQLDQNTQDELIKEITRDE 540
            + YY++LYS E +  +  T+  +    +L +  ++ L +  TRDE
Sbjct: 204 AMDYYRKLYSLEDVSVVRGTLPTE-GFPRLTREEKNNLNRPFTRDE 248


>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 855

 Score = 79.7 bits (195), Expect = 3e-13
 Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 1/161 (0%)
 Frame = +1

Query: 46   LRQVKNDLISWNKDK-GRTITRKQDAKKELEEIQTLLQTRPLDQQLITRERMTTKIYVKA 222
            L  +K+ L  WN++  G    RK+    E++ +Q LL+    D  L+++E    K +   
Sbjct: 687  LAALKSKLKKWNREVFGDVNRRKESLMNEIKVVQELLEINQTDN-LLSKEEELIKEFDVV 745

Query: 223  AVEEESECKQKSREQVVTLGDSNTKYFFNSVKMRRMTNRITCLKDQQGRMLEEISEIGE* 402
              +EE    QKSRE+ V LGD NTKYF     +RR  NRI  LK   G  + +  E+ + 
Sbjct: 746  LEQEEVLWFQKSREKWVELGDRNTKYFHTMTVVRRRRNRIEMLKADDGSWVSQQQELEKM 805

Query: 403  CVKYYQELYSPEHMEEIDFTMMNDIQVEQLDQNTQDELIKE 525
             V YY  LYS E ++E+         VE+L  N  +  I++
Sbjct: 806  AVDYYSRLYSMEDVDEV---------VERLPTNPPNPRIRK 837


>ref|XP_002335785.1| predicted protein [Populus trichocarpa] gi|222834756|gb|EEE73219.1|
           predicted protein [Populus trichocarpa]
          Length = 217

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
 Frame = +1

Query: 46  LRQVKNDLISWN-KDKGRTITRKQDAKKELEEIQTLLQTRPLDQQLITRERMTTKIYVKA 222
           ++ VK  L  +N K  G+   R  +AK+++ E Q  LQ  P D ++   E +  K YV+ 
Sbjct: 50  MKNVKGALKEFNFKYFGKISERMLEAKRKMGEAQCQLQKTPSDVEIHRIEPIIVKDYVRL 109

Query: 223 AVEEESECKQKSREQVVTLGDSNTKYFFNSVKMRRMTNRITCLKDQQGRMLEEISEIGE* 402
           A  EES  ++KSR Q + LGD N+K+FFNSVK     NRI  + D  G  L +  E+ + 
Sbjct: 110 AEVEESFLRKKSRLQWLNLGDKNSKFFFNSVKGFHSCNRILSIHDDNGMCLTDAREVKDT 169

Query: 403 CVKYYQE 423
            V Y+Q+
Sbjct: 170 IVSYFQK 176


>ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|222873371|gb|EEF10502.1|
            predicted protein [Populus trichocarpa]
          Length = 819

 Score = 75.9 bits (185), Expect = 4e-12
 Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 1/147 (0%)
 Frame = +1

Query: 16   GNPMYTFMRKLRQVKNDLISWNKDKGRTIT-RKQDAKKELEEIQTLLQTRPLDQQLITRE 192
            G PMY    KLR++K +L  +N      I+ R +DAK ++++ Q  L T   +  L  RE
Sbjct: 648  GCPMYQLCCKLRKLKQELKLFNMAHFSNISDRVRDAKNKMDKAQQALHTAHENPILCMRE 707

Query: 193  RMTTKIYVKAAVEEESECKQKSREQVVTLGDSNTKYFFNSVKMRRMTNRITCLKDQQGRM 372
            R     Y      EES  KQK+R Q ++LGD NT YF  SV  R+  N++  L  + G +
Sbjct: 708  RDVVHKYASTVRAEESFFKQKARIQWLSLGDQNTSYFHKSVNGRQNRNKLLSLTREDGEV 767

Query: 373  LEEISEIGE*CVKYYQELYSPEHMEEI 453
            +E    +    + Y+  +   + M  +
Sbjct: 768  VERQEAVKSEVISYFHRVLGVDQMPRV 794