BLASTX nr result
ID: Coptis24_contig00009603
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00009603 (542 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebenn... 88 7e-16 emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 80 2e-13 gb|AAD37019.2| putative non-LTR retrolelement reverse transcript... 80 3e-13 ref|XP_002335785.1| predicted protein [Populus trichocarpa] gi|2... 79 4e-13 ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|2... 76 4e-12 >gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebennensis] Length = 464 Score = 88.2 bits (217), Expect = 7e-16 Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 1/133 (0%) Frame = +1 Query: 58 KNDLISWNKDK-GRTITRKQDAKKELEEIQTLLQTRPLDQQLITRERMTTKIYVKAAVEE 234 K L WNK+ G RK +E++ +Q L+ D L+ +E + K + +E Sbjct: 247 KEKLKKWNKEVFGNIQQRKDKLVQEIQAVQDFLEHNQTDD-LLNKEDVLIKEFEVVLEQE 305 Query: 235 ESECKQKSREQVVTLGDSNTKYFFNSVKMRRMTNRITCLKDQQGRMLEEISEIGE*CVKY 414 E QKSRE+ + LGD NTKYF S +RR N+I LKD +G+ +EE E+ + V+Y Sbjct: 306 EIVWFQKSREKWIALGDRNTKYFHTSTIIRRRRNQIEMLKDDEGKWVEEPEELAKMAVEY 365 Query: 415 YQELYSPEHMEEI 453 YQ+LYS E ++ I Sbjct: 366 YQKLYSVEDVDSI 378 >emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana] gi|7268307|emb|CAB78601.1| reverse transcriptase like protein [Arabidopsis thaliana] Length = 929 Score = 80.1 bits (196), Expect = 2e-13 Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 1/166 (0%) Frame = +1 Query: 46 LRQVKNDLISWNKDK-GRTITRKQDAKKELEEIQTLLQTRPLDQQLITRERMTTKIYVKA 222 L +++ L WNK+ G RK+ +L+ +Q LL+ D L+ +E K + Sbjct: 85 LNRLRWQLKKWNKEVFGNIHVRKEKVVSDLKAVQDLLEVVQTDD-LLMKEDTLLKEFDVL 143 Query: 223 AVEEESECKQKSREQVVTLGDSNTKYFFNSVKMRRMTNRITCLKDQQGRMLEEISEIGE* 402 +EE+ QKSRE+++ LGD NT +F S +RR NRI LKD + R + E + + Sbjct: 144 LHQEETLWFQKSREKLLALGDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKL 203 Query: 403 CVKYYQELYSPEHMEEIDFTMMNDIQVEQLDQNTQDELIKEITRDE 540 + YY++LYS E + + T+ + +L + ++ L + TRDE Sbjct: 204 AMDYYRKLYSLEDVSVVRGTLPTE-GFPRLTREEKNNLNRPFTRDE 248 >gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis thaliana] Length = 855 Score = 79.7 bits (195), Expect = 3e-13 Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 1/161 (0%) Frame = +1 Query: 46 LRQVKNDLISWNKDK-GRTITRKQDAKKELEEIQTLLQTRPLDQQLITRERMTTKIYVKA 222 L +K+ L WN++ G RK+ E++ +Q LL+ D L+++E K + Sbjct: 687 LAALKSKLKKWNREVFGDVNRRKESLMNEIKVVQELLEINQTDN-LLSKEEELIKEFDVV 745 Query: 223 AVEEESECKQKSREQVVTLGDSNTKYFFNSVKMRRMTNRITCLKDQQGRMLEEISEIGE* 402 +EE QKSRE+ V LGD NTKYF +RR NRI LK G + + E+ + Sbjct: 746 LEQEEVLWFQKSREKWVELGDRNTKYFHTMTVVRRRRNRIEMLKADDGSWVSQQQELEKM 805 Query: 403 CVKYYQELYSPEHMEEIDFTMMNDIQVEQLDQNTQDELIKE 525 V YY LYS E ++E+ VE+L N + I++ Sbjct: 806 AVDYYSRLYSMEDVDEV---------VERLPTNPPNPRIRK 837 >ref|XP_002335785.1| predicted protein [Populus trichocarpa] gi|222834756|gb|EEE73219.1| predicted protein [Populus trichocarpa] Length = 217 Score = 79.0 bits (193), Expect = 4e-13 Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 1/127 (0%) Frame = +1 Query: 46 LRQVKNDLISWN-KDKGRTITRKQDAKKELEEIQTLLQTRPLDQQLITRERMTTKIYVKA 222 ++ VK L +N K G+ R +AK+++ E Q LQ P D ++ E + K YV+ Sbjct: 50 MKNVKGALKEFNFKYFGKISERMLEAKRKMGEAQCQLQKTPSDVEIHRIEPIIVKDYVRL 109 Query: 223 AVEEESECKQKSREQVVTLGDSNTKYFFNSVKMRRMTNRITCLKDQQGRMLEEISEIGE* 402 A EES ++KSR Q + LGD N+K+FFNSVK NRI + D G L + E+ + Sbjct: 110 AEVEESFLRKKSRLQWLNLGDKNSKFFFNSVKGFHSCNRILSIHDDNGMCLTDAREVKDT 169 Query: 403 CVKYYQE 423 V Y+Q+ Sbjct: 170 IVSYFQK 176 >ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|222873371|gb|EEF10502.1| predicted protein [Populus trichocarpa] Length = 819 Score = 75.9 bits (185), Expect = 4e-12 Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 1/147 (0%) Frame = +1 Query: 16 GNPMYTFMRKLRQVKNDLISWNKDKGRTIT-RKQDAKKELEEIQTLLQTRPLDQQLITRE 192 G PMY KLR++K +L +N I+ R +DAK ++++ Q L T + L RE Sbjct: 648 GCPMYQLCCKLRKLKQELKLFNMAHFSNISDRVRDAKNKMDKAQQALHTAHENPILCMRE 707 Query: 193 RMTTKIYVKAAVEEESECKQKSREQVVTLGDSNTKYFFNSVKMRRMTNRITCLKDQQGRM 372 R Y EES KQK+R Q ++LGD NT YF SV R+ N++ L + G + Sbjct: 708 RDVVHKYASTVRAEESFFKQKARIQWLSLGDQNTSYFHKSVNGRQNRNKLLSLTREDGEV 767 Query: 373 LEEISEIGE*CVKYYQELYSPEHMEEI 453 +E + + Y+ + + M + Sbjct: 768 VERQEAVKSEVISYFHRVLGVDQMPRV 794