BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009589
         (2982 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264009.1| PREDICTED: replication protein A 70 kDa DNA-...   960   0.0  
emb|CAN82475.1| hypothetical protein VITISV_038295 [Vitis vinifera]   957   0.0  
ref|XP_004146122.1| PREDICTED: replication protein A 70 kDa DNA-...   852   0.0  
ref|XP_003533460.1| PREDICTED: replication protein A 70 kDa DNA-...   808   0.0  
ref|XP_002519884.1| replication factor A 1, rfa1, putative [Rici...   793   0.0  

>ref|XP_002264009.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
            [Vitis vinifera]
          Length = 882

 Score =  960 bits (2481), Expect = 0.0
 Identities = 501/838 (59%), Positives = 612/838 (73%), Gaps = 28/838 (3%)
 Frame = -1

Query: 2838 INLTNNAIAMICNGELQAEEDMKPVLQVYDIKLLSAGQQS-SNERYRMLLSDGLHSQQSM 2662
            +NLT  AI+M+C+G+ Q   D+KPVLQV DI+L++  QQS SNER+R+LLSDG H QQ M
Sbjct: 3    VNLTEGAISMLCSGDAQGS-DVKPVLQVADIRLVNTQQQSNSNERFRILLSDGCHLQQGM 61

Query: 2661 LATQLNHLIHSGKLQKGSIVRLSQFVSQTIQNRKXXXXIGLDVIFENCDQIGEPKLYVDG 2482
            LATQ N L+ SG+LQKGS+V+L+QFV   I++R     I LDVI E CD IGEPK YV G
Sbjct: 62   LATQRNELVKSGRLQKGSVVQLTQFVCNVIKDRMIIIIIDLDVILEKCDPIGEPKQYVQG 121

Query: 2481 -------PQVRTSIPGQSSVGHPGTASVNPQSVXXXXXXXXXXXXXXXXANVIGRASLHQ 2323
                   P  RTS P  SSV HPGT   NPQS                  N+ G AS + 
Sbjct: 122  GTAGGVAPIARTSAPMPSSVDHPGTVLGNPQSFGNSSLTGGSAAKP----NMAGVASPY- 176

Query: 2322 PKPEPHANPQSYGSSFSGNPDSRVFSTTNGPSMYPKAESGARHPQS--TSGKYGDQTGNY 2149
                 HAN      SFS NPDS  F+ TN P MY K +  A  P S  ++G YGDQ+  +
Sbjct: 177  -----HAN------SFSSNPDSGRFAGTNAPPMYSKMQPDAGIPASAASTGSYGDQSTGF 225

Query: 2148 VNRNEGGSRAPLNTYGRPMPSTYQQPPPTYMNRGPVARNDTTVRTIPIADLNPYQGRWTI 1969
             N     SRAP N   R   S YQQPPP Y NRGPVARN+   R IPIA LNPYQGRWTI
Sbjct: 226  RNNKVEVSRAPYNAPARQPQSAYQQPPPMYTNRGPVARNEAAARIIPIAALNPYQGRWTI 285

Query: 1968 KARVTSKTILKSYSNARGEGKVFSFDLLDSEGSEIQATCFNMAAEQFYGMIEAGRVYLIS 1789
            KARVT+K  L+ Y+N RG+GKVFSFDLLDS+G EI+ TCFN  A+QFY  IE G+VYLIS
Sbjct: 286  KARVTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRVTCFNAVADQFYNQIETGKVYLIS 345

Query: 1788 KGSLKPASKTFNHLNNDFCISLDIGATVQPCAEDDDSIPMQQFHFRSIADIENMDNNTML 1609
            KGSLKPA KTFNHL ND  I L+  +T+QPC +DD+SIP QQFHFRSI+D+E+M+NN+++
Sbjct: 346  KGSLKPAQKTFNHLRNDHEIFLESTSTIQPCFDDDNSIPRQQFHFRSISDVESMENNSVV 405

Query: 1608 DVIGVVSSISLTVSIMKKDGTETLKRSLQMKDMSGRSVEVTLWGNFCNAEGQQLQSLCDS 1429
            DVIGVVS IS + SIM+K+GTET KR+L +KDMSGRSVE+TLWGNFCNAEGQ+LQ++CDS
Sbjct: 406  DVIGVVSFISPSASIMRKNGTETQKRALHLKDMSGRSVELTLWGNFCNAEGQRLQNMCDS 465

Query: 1428 GKYPVLAVKAGRINDFNGKAVGTLSNSQLFVNPEIPEARTLREWFDTEGKDITSVSVSRE 1249
            G +PVLAVK+ R+NDFNGKAVGT+S SQLF+ P+ PEAR L+EWFD EG++  SVS+SRE
Sbjct: 466  GVFPVLAVKSARVNDFNGKAVGTISTSQLFIEPDFPEARKLKEWFDKEGRNTPSVSISRE 525

Query: 1248 TVGVGRIDVRKTVSQIKDEQLGTSEKPDWITVKATINFIKVDNFCYTACPLMVGERQCNK 1069
               +GR DVRKT+SQIKDE+LGTSEKPDWITV AT++FIKVDNFCYTACP+M+G+RQCNK
Sbjct: 526  VTSMGRTDVRKTISQIKDERLGTSEKPDWITVCATVSFIKVDNFCYTACPIMIGDRQCNK 585

Query: 1068 KVNNNGDGQYRCEKCDQSVAQCDYRYILQFQIKDHTGLTWVTAFQECGEEIIGVSAKELY 889
            KV NNGDG++RCE+CDQSV  CDYRYILQFQI+DHTGLTWVTAFQECGEEI+G+SAK LY
Sbjct: 586  KVTNNGDGKWRCERCDQSVDDCDYRYILQFQIQDHTGLTWVTAFQECGEEIMGISAKNLY 645

Query: 888  DLKHE--DEDSFGDAIRRVMFTDYVFKLKVKEETFSDEQRVKSTVVKAEKLDVSSESRFL 715
             LK+E  D++ FG+ +R V+FT Y FKLKVKEE FSDEQRVKSTVVKAEK++ SSESRFL
Sbjct: 646  YLKYEEQDDEKFGEILRGVLFTKYSFKLKVKEEIFSDEQRVKSTVVKAEKVNFSSESRFL 705

Query: 714  LDMINRLVEDHNAFLGKAANVVMESGMISTGL---GVNQAS-MMNSTGMRTN-------- 571
            LDM+ +   + + F  K+ NV+   GM + GL   G+ Q++  +N +G  +N        
Sbjct: 706  LDMVEKHKVEDSTFPLKSENVISNGGMTNPGLGNVGIRQSTPSVNYSGNASNAGRDFGFP 765

Query: 570  ---HVGHGSPYNST-KNAIGGTGVSVFCNSCGGTGHNERNCPSIINRQGHPGVSGHVN 409
                V HG+ Y S+  +A G TG+   CNSCGGTGH+  NCPS+++        G+V+
Sbjct: 766  ANQGVQHGNQYGSSGLSATGSTGMYQSCNSCGGTGHSSSNCPSVMHSPRQSSGGGYVS 823


>emb|CAN82475.1| hypothetical protein VITISV_038295 [Vitis vinifera]
          Length = 882

 Score =  957 bits (2475), Expect = 0.0
 Identities = 500/838 (59%), Positives = 611/838 (72%), Gaps = 28/838 (3%)
 Frame = -1

Query: 2838 INLTNNAIAMICNGELQAEEDMKPVLQVYDIKLLSAGQQS-SNERYRMLLSDGLHSQQSM 2662
            +NLT  AI+M+C+G+ Q   D+KPVLQV DI+L++  QQS SNER+R+LLSDG H QQ M
Sbjct: 3    VNLTEGAISMLCSGDAQGS-DVKPVLQVADIRLVNTQQQSNSNERFRILLSDGCHLQQGM 61

Query: 2661 LATQLNHLIHSGKLQKGSIVRLSQFVSQTIQNRKXXXXIGLDVIFENCDQIGEPKLYVDG 2482
            LATQ N L+ SG+LQKGS+V+L+QFV   I++R     I LDVI E CD IGEPK YV G
Sbjct: 62   LATQRNELVKSGRLQKGSVVQLTQFVCNVIKDRMIIIIIDLDVILEKCDPIGEPKQYVQG 121

Query: 2481 -------PQVRTSIPGQSSVGHPGTASVNPQSVXXXXXXXXXXXXXXXXANVIGRASLHQ 2323
                   P  RTS P  SSV HPGT   NPQS                  N+ G AS + 
Sbjct: 122  GTAGGVAPIARTSAPMPSSVDHPGTVLGNPQSFGNSSLTGGSAAKP----NMAGVASPY- 176

Query: 2322 PKPEPHANPQSYGSSFSGNPDSRVFSTTNGPSMYPKAESGARHPQS--TSGKYGDQTGNY 2149
                 HAN      SFS NPDS  F+ TN P MY K +  A  P S  ++G YGDQ+  +
Sbjct: 177  -----HAN------SFSSNPDSGRFAGTNAPPMYSKMQPDAGIPASAASTGSYGDQSTGF 225

Query: 2148 VNRNEGGSRAPLNTYGRPMPSTYQQPPPTYMNRGPVARNDTTVRTIPIADLNPYQGRWTI 1969
             N     SRAP N   R   S YQQPPP Y NRGPVARN+   R IPIA LNPYQGRWTI
Sbjct: 226  RNNKVEVSRAPYNAPARQPQSAYQQPPPMYTNRGPVARNEAXARIIPIAALNPYQGRWTI 285

Query: 1968 KARVTSKTILKSYSNARGEGKVFSFDLLDSEGSEIQATCFNMAAEQFYGMIEAGRVYLIS 1789
            KARVT+K  L+ Y+N RG+GKVFSFDLLDS+G EI+ TCFN  A+QFY  IE G+VYLIS
Sbjct: 286  KARVTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRVTCFNAVADQFYNQIETGKVYLIS 345

Query: 1788 KGSLKPASKTFNHLNNDFCISLDIGATVQPCAEDDDSIPMQQFHFRSIADIENMDNNTML 1609
            KGSLKPA KTFNHL ND  I L+  +T+QPC +DD+SIP QQFHFR I+D+E+M+NN+++
Sbjct: 346  KGSLKPAQKTFNHLRNDHEIFLESTSTIQPCFDDDNSIPRQQFHFRXISDVESMENNSVV 405

Query: 1608 DVIGVVSSISLTVSIMKKDGTETLKRSLQMKDMSGRSVEVTLWGNFCNAEGQQLQSLCDS 1429
            DVIGVVS IS + SIM+K+GTET KR+L +KDMSGRSVE+TLWGNFCNAEGQ+LQ++CDS
Sbjct: 406  DVIGVVSFISPSASIMRKNGTETQKRALHLKDMSGRSVELTLWGNFCNAEGQRLQNMCDS 465

Query: 1428 GKYPVLAVKAGRINDFNGKAVGTLSNSQLFVNPEIPEARTLREWFDTEGKDITSVSVSRE 1249
            G +PVLAVK+ R+NDFNGKAVGT+S SQLF+ P+ PEAR L+EWFD EG++  SVS+SRE
Sbjct: 466  GVFPVLAVKSARVNDFNGKAVGTISTSQLFIEPDFPEARKLKEWFDKEGRNTPSVSISRE 525

Query: 1248 TVGVGRIDVRKTVSQIKDEQLGTSEKPDWITVKATINFIKVDNFCYTACPLMVGERQCNK 1069
               +GR DVRKT+SQIKDE+LGTSEKPDWITV AT++FIKVDNFCYTACP+M+G+RQCNK
Sbjct: 526  VTXMGRTDVRKTISQIKDERLGTSEKPDWITVCATVSFIKVDNFCYTACPIMIGDRQCNK 585

Query: 1068 KVNNNGDGQYRCEKCDQSVAQCDYRYILQFQIKDHTGLTWVTAFQECGEEIIGVSAKELY 889
            KV NNGDG++RCE+CDQSV  CDYRYILQFQI+DHTGLTWVTAFQECGEEI+G+SAK LY
Sbjct: 586  KVTNNGDGKWRCERCDQSVDDCDYRYILQFQIQDHTGLTWVTAFQECGEEIMGISAKNLY 645

Query: 888  DLKHE--DEDSFGDAIRRVMFTDYVFKLKVKEETFSDEQRVKSTVVKAEKLDVSSESRFL 715
             LK+E  D++ FG+ +R V+FT Y FKLKVKEE FSDEQRVKSTVVKAEK++ SSESRFL
Sbjct: 646  YLKYEEQDDEKFGEILRGVLFTKYSFKLKVKEEIFSDEQRVKSTVVKAEKVNFSSESRFL 705

Query: 714  LDMINRLVEDHNAFLGKAANVVMESGMISTGL---GVNQAS-MMNSTGMRTN-------- 571
            LDM+ +   + + F  K+ NV+   GM + GL   G+ Q++  +N +G  +N        
Sbjct: 706  LDMVEKHKVEDSTFPLKSENVISNGGMTNPGLGNVGIRQSTPSVNYSGNASNAGRDFGFP 765

Query: 570  ---HVGHGSPYNST-KNAIGGTGVSVFCNSCGGTGHNERNCPSIINRQGHPGVSGHVN 409
                V HG+ Y S+  +A G TG+   CNSCGGTGH+  NCPS+++        G+V+
Sbjct: 766  ANQGVQHGNQYGSSGLSATGSTGMXQSCNSCGGTGHSSSNCPSVMHSPRQSSGGGYVS 823


>ref|XP_004146122.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
            [Cucumis sativus]
          Length = 861

 Score =  852 bits (2201), Expect = 0.0
 Identities = 450/824 (54%), Positives = 569/824 (69%), Gaps = 23/824 (2%)
 Frame = -1

Query: 2847 MDDINLTNNAIAMICNGELQAEEDMKPVLQVYDIKLLSAGQQSSNERYRMLLSDGLHSQQ 2668
            M    LT  A+ +IC  E  AE   +P+LQV D+KL++  QQS +ER+R+L+SDG H QQ
Sbjct: 5    MASSKLTEGAVMVICKRESSAET-FQPILQVIDLKLVNTSQQSGSERFRLLVSDGTHFQQ 63

Query: 2667 SMLATQLNHLIHSGKLQKGSIVRLSQFVSQTIQNRKXXXXIGLDVIFENCDQIGEPKLYV 2488
             ML TQLN L+ SGKLQKGSIVRL Q+V   +Q R     I LDVI E CD IGEP    
Sbjct: 64   GMLGTQLNELVKSGKLQKGSIVRLRQYVCNPVQERLIIIVIELDVIEEMCDIIGEPVSAT 123

Query: 2487 DGPQVRTSIPGQSSVG----HPGTASVNPQSVXXXXXXXXXXXXXXXXANVIGRASLHQP 2320
                   S     SVG     PG+  +   +V                      AS  QP
Sbjct: 124  RSSANALSGNPLPSVGGLGASPGSGMIGKGNV--------------------SSASFEQP 163

Query: 2319 KPEPHANPQSYGSSFSGNPDSRVFSTTNGPSMYPKAESGARH--PQSTSGKYGDQTGNYV 2146
            K      P     S+S  P++  FS +  P  Y K +SG+R   P   +G YGDQ   Y 
Sbjct: 164  KVNQSHVPHM--GSYSNPPETGRFSASIAPPSYSKTDSGSRFNGPSPLTGSYGDQKMAYH 221

Query: 2145 NRNEGGSRAPLNT--YGRPMPSTYQQPPPTYMNRGPVARNDTTVRTIPIADLNPYQGRWT 1972
            N      R PLN+  Y RP P  YQQPP  Y NRGP+A+N+   R +PI+ LNPYQGRWT
Sbjct: 222  NSGSDIPRPPLNSNAYARPQP-IYQQPPSMYSNRGPIAKNEAAPRIMPISALNPYQGRWT 280

Query: 1971 IKARVTSKTILKSYSNARGEGKVFSFDLLDSEGSEIQATCFNMAAEQFYGMIEAGRVYLI 1792
            IKARVTSK  L+ Y+N RG+GKVFSFDLLD+   EI+ TCFN  A+QFY  IE+G+VY I
Sbjct: 281  IKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYFI 340

Query: 1791 SKGSLKPASKTFNHLNNDFCISLDIGATVQPCAEDDDSIPMQQFHFRSIADIENMDNNTM 1612
            SKGSLKPA K FNHL ND+ I L+  +T+QPC EDD SIP QQFHF  I +IE MD+N++
Sbjct: 341  SKGSLKPAQKNFNHLKNDYEIFLENTSTIQPCFEDDQSIPQQQFHFHQIGEIEGMDSNSV 400

Query: 1611 LDVIGVVSSISLTVSIMKKDGTETLKRSLQMKDMSGRSVEVTLWGNFCNAEGQQLQSLCD 1432
            +DVIGVVSSI+   S+M+K+GTET KRSLQ+KDMSGRSVE+TLWGNFC AEGQ+LQ++CD
Sbjct: 401  VDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCD 460

Query: 1431 SGKYPVLAVKAGRINDFNGKAVGTLSNSQLFVNPEIPEARTLREWFDTEGKDITSVSVSR 1252
            SG +PVLAVK+ R++DFNGKAVGT+S SQLF+ P+ PEA +LREWF+ EG+   SVS+SR
Sbjct: 461  SGLFPVLAVKSSRVSDFNGKAVGTISTSQLFIEPDFPEAHSLREWFEREGRSTLSVSISR 520

Query: 1251 ETVGVGRIDVRKTVSQIKDEQLGTSEKPDWITVKATINFIKVDNFCYTACPLMVGERQCN 1072
            E   VGR DVRKT+SQIKDE+LGTSEKPDWITV AT++FIKVD+FCYTACP+M+G+RQC+
Sbjct: 521  EVASVGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDSFCYTACPIMIGDRQCS 580

Query: 1071 KKVNNNGDGQYRCEKCDQSVAQCDYRYILQFQIKDHTGLTWVTAFQECGEEIIGVSAKEL 892
            KKV NNGDG++RC++CDQSV +CDYRYILQ QI+DHTGLTWVTAFQE GEEI+G+ AK L
Sbjct: 581  KKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRL 640

Query: 891  YDLKHE--DEDSFGDAIRRVMFTDYVFKLKVKEETFSDEQRVKSTVVKAEKLDVSSESRF 718
            Y LK+E  D++ F + IR+V+FT ++ KLK+KEETFSDEQRV+STVVKAE ++ SSESRF
Sbjct: 641  YYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSSESRF 700

Query: 717  LLDMINRL-VEDHNAFLGKAANVVMESGMIST-----GLGVNQASMMNST------GMRT 574
            LL+++ +L  E+ ++   KA + +   G   T     G G   + + NST      G   
Sbjct: 701  LLNLMEKLKPENSSSATPKAESTIHNFGFRDTASENIGGGQFVSPIRNSTNFSREYGTPN 760

Query: 573  NHVGHGSPYNSTK-NAIGGTGVSVFCNSCGGTGHNERNCPSIIN 445
              V +G+ Y+S++ +       + +CNSCGG+GH+  NCPSI++
Sbjct: 761  QGVQYGNQYSSSRPSPSTPLNSNTYCNSCGGSGHSSTNCPSIMS 804


>ref|XP_003533460.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
            [Glycine max]
          Length = 894

 Score =  808 bits (2086), Expect = 0.0
 Identities = 415/829 (50%), Positives = 563/829 (67%), Gaps = 15/829 (1%)
 Frame = -1

Query: 2838 INLTNNAIAMICNGELQAEEDMKPVLQVYDIKLLSAGQQSSNERYRMLLSDGLHSQQSML 2659
            ++LT +AI  +C+      E ++PVLQV ++KL+ + Q S+ ERYR++LSDG H QQ ML
Sbjct: 3    VSLTQSAIMEMCSAN--CPEGLQPVLQVIELKLVQSQQNSNVERYRLVLSDGSHYQQGML 60

Query: 2658 ATQLNHLIHSGKLQKGSIVRLSQFVSQTIQNRKXXXXIGLDVIFENCDQIGEPKLYVDGP 2479
            ATQ N L+H+GKLQKGS+VRL+QF+   +Q+RK    + LDV+ + C+ IGEP   V  P
Sbjct: 61   ATQKNDLVHAGKLQKGSVVRLTQFICNVVQSRKIIIIVDLDVVLDKCELIGEP---VPAP 117

Query: 2478 QVRTSIPGQSSVGHPGTASVNPQSVXXXXXXXXXXXXXXXXANVIGRASLHQPKPE-PHA 2302
            +     P +S+ G  G  S NPQ +                  +  R ++  P P+ P  
Sbjct: 118  K---DAPTESATGQSGVTSGNPQLLNSSSHTG----------GMPARPNVASPSPDHPKV 164

Query: 2301 NPQSYGSSFSGNPDSRVFSTTNGPSMYPKAESGARHPQSTSGKYGDQTGNYVNRNEGGSR 2122
            NP + G          V+S+ N P  YPK E G       SG  G Q   + N     SR
Sbjct: 165  NPSASG----------VYSS-NAPPTYPKVEHGVSRSAPFSGSSGGQNTGFRNPQFEASR 213

Query: 2121 APLNTYGRP-MPSTYQQPPPTYMNRGPVARNDTTVRTIPIADLNPYQGRWTIKARVTSKT 1945
               N+Y RP     Y+QP P Y NR P+ RN+   R IPIA LNPYQ  WTIKARVT K 
Sbjct: 214  PLQNSYARPPQQPMYRQPSPMYTNRAPMGRNEAAPRIIPIAALNPYQSMWTIKARVTFKG 273

Query: 1944 ILKSYSNARGEGKVFSFDLLDSEGSEIQATCFNMAAEQFYGMIEAGRVYLISKGSLKPAS 1765
             L+ Y+NARG+GKVFSFDLLDS+G EI+ATCFN  A+QFY +IEAG+VYLIS+GS+KPA 
Sbjct: 274  ELRHYTNARGDGKVFSFDLLDSDGGEIRATCFNAVADQFYNVIEAGKVYLISRGSIKPAQ 333

Query: 1764 KTFNHLNNDFCISLDIGATVQPCAEDDDSIPMQQFHFRSIADIENMDNNTMLDVIGVVSS 1585
            K FNHL ND  ++LD+ + +QPC +D+DSIP Q F++R I++IE+++NN+++DVIGVV+S
Sbjct: 334  KNFNHLRNDQELTLDVASIIQPCLDDNDSIPSQTFNYRPISEIESLENNSIVDVIGVVTS 393

Query: 1584 ISLTVSIMKKDGTETLKRSLQMKDMSGRSVEVTLWGNFCNAEGQQLQSLCDSGKYPVLAV 1405
            IS T SIM+K+GTE  KR+LQ+KDMSGRSVE+TLWGNFC  EGQ+LQ++CD+G++PVLA 
Sbjct: 394  ISPTASIMRKNGTEVQKRTLQLKDMSGRSVELTLWGNFCIVEGQRLQTICDAGEFPVLAT 453

Query: 1404 KAGRINDFNGKAVGTLSNSQLFVNPEIPEARTLREWFDTEGKDITSVSVSRETVGVGRID 1225
            KA R+NDFNGK+VGT++ SQL+V P+ PEA TL+ WF+ EGK + ++S+SRE   +G+ D
Sbjct: 454  KAVRVNDFNGKSVGTIATSQLYVEPDFPEACTLKRWFENEGKSVPTLSISREISNLGKTD 513

Query: 1224 VRKTVSQIKDEQLGTSEKPDWITVKATINFIKVDNFCYTACPLMVGERQCNKKVNNNGDG 1045
            VRKT+SQIKDE+LGTSEKPDWI+V A ++ IKVDNFCY  CPL +G+RQCNKKV NN DG
Sbjct: 514  VRKTISQIKDEKLGTSEKPDWISVFAAVSHIKVDNFCYPGCPLKIGDRQCNKKVTNNADG 573

Query: 1044 QYRCEKCDQSVAQCDYRYILQFQIKDHTGLTWVTAFQECGEEIIGVSAKELYDLKHE--D 871
             + CE+C+QS+  CD+RY+L  QI+DHTG+TWVTAFQE GEEI+G+ AK+LY +K+E  D
Sbjct: 574  TWHCERCNQSIDTCDFRYLLSMQIQDHTGITWVTAFQESGEEIMGIPAKDLYYMKYEEQD 633

Query: 870  EDSFGDAIRRVMFTDYVFKLKVKEETFSDEQRVKSTVVKAEKLDVSSESRFLLDMI-NRL 694
            +D F +   +V+FT+Y+FKL++KEE +SDEQR+KST+VKAEK++ +S+SR  L++I N L
Sbjct: 634  DDKFSEIFHKVLFTEYMFKLRIKEEFYSDEQRIKSTIVKAEKVNFASKSRVNLELIFNEL 693

Query: 693  VEDHNAFLGKAANVVMES--GMISTGLGV------NQASMMNSTGMRTNHVG--HGSPYN 544
              + +  +    +V   +  G + TG         + A+     GM  N VG  HG+ Y+
Sbjct: 694  RAEKSKGITIPNSVTNNTRLGSVETGQVTPPAYYKSNANTSRDFGMPANQVGQQHGNQYS 753

Query: 543  STKNAIGGTGVSVFCNSCGGTGHNERNCPSIINRQGHPGVSGHVNASHA 397
            +  +A    G    C +CG +GH+   CP+I N  GH    G  N + A
Sbjct: 754  NISSAGAAPGSYTSCTNCGVSGHSSALCPNIRNVPGHSAGGGFANRASA 802


>ref|XP_002519884.1| replication factor A 1, rfa1, putative [Ricinus communis]
            gi|223540930|gb|EEF42488.1| replication factor A 1, rfa1,
            putative [Ricinus communis]
          Length = 901

 Score =  793 bits (2049), Expect = 0.0
 Identities = 419/838 (50%), Positives = 555/838 (66%), Gaps = 37/838 (4%)
 Frame = -1

Query: 2847 MDDINLTNNAIAMICNGELQAEEDMKPVLQVYDIKLLSAGQQSSNERYRMLLSDGLHSQQ 2668
            M ++NL+  AI+ I +G   A E +KP LQV ++K +   Q   +ER+R++LSDG H QQ
Sbjct: 1    MANMNLSEGAISKITSGGATAAE-LKPTLQVTELKQVQTKQPQQSERFRLILSDGSHLQQ 59

Query: 2667 SMLATQLNHLIHSGKLQKGSIVRLSQFVSQTIQNRKXXXXIG--------------LDVI 2530
            +ML TQ+NHL+  G L+ GS+V+L Q+   T+Q R                     L+ I
Sbjct: 60   AMLGTQINHLVKDGNLRPGSVVQLIQYTCTTVQGRMLLGSRSCIGCERNRGRAYLLLNEI 119

Query: 2529 ------FENCDQIGEPKLYVDGPQVRTSIPGQSSVGHPGTASVNPQSVXXXXXXXXXXXX 2368
                  F  C  IG P         +T  P   S   P ++  NPQS             
Sbjct: 120  LLGFFSFAKCAIIGNPV-----SAQKTLGPSHPSTDQPVSSPANPQSYGSGSPAGGMVEN 174

Query: 2367 XXXXANVIGRASLHQPKPEPHANPQSYGSSFSGNPDSRVFSTTNGPSMYPKAESGARHPQ 2188
                   +  +SL  P+       Q +GSS   + DS  + TTN P  + KAE G+  P 
Sbjct: 175  PN-----LNVSSLQNPRMN-----QLHGSSHPSSYDSGRYVTTNAPPCHLKAEPGSGLPG 224

Query: 2187 STS--GKYGDQTGNYVNRNEGGSRAPLNTYGRPMPSTYQQPPPTYMNRGPVARNDTTVRT 2014
            S S    Y +Q+  + N      +    TY  P    YQQPPP Y NRGPVA+N+   R 
Sbjct: 225  SASMNRSYNEQSAGFCNPRPEIPQTT-GTYPYPPCPAYQQPPPMYSNRGPVAKNEAPPRI 283

Query: 2013 IPIADLNPYQGRWTIKARVTSKTILKSYSNARGEGKVFSFDLLDSEGSEIQATCFNMAAE 1834
            +PI+ LNPYQGRWTIKARVT+K  L+ Y+N RG+GKVFSFDLLDS+G EI+  CFN  A+
Sbjct: 284  MPISALNPYQGRWTIKARVTAKGELRHYNNVRGDGKVFSFDLLDSDGGEIRVICFNTVAD 343

Query: 1833 QFYGMIEAGRVYLISKGSLKPASKTFNHLNNDFCISLDIGATVQPCAEDDDSIPMQQFHF 1654
            QFY  IEAG+VYLIS+G+LKPA KTFNHL+ND  I L+  + +QPC EDDD+IP QQFHF
Sbjct: 344  QFYHQIEAGKVYLISRGNLKPAQKTFNHLHNDLEIFLESNSVIQPCFEDDDAIPRQQFHF 403

Query: 1653 RSIADIENMDNNTMLDVIGVVSSISLTVSIMKKDGTETLKRSLQMKDMSGRSVEVTLWGN 1474
            R I+++E MDNN+++D+IG+VS I+   SIM+K+GTET KR+LQ+KD SGRSVE+TLWGN
Sbjct: 404  RPISEVEGMDNNSVVDIIGMVSCITPVASIMRKNGTETQKRTLQLKDNSGRSVELTLWGN 463

Query: 1473 FCNAEGQQLQSLCDSGKYPVLAVKAGRINDFNGKAVGTLSNSQLFVNPEIPEARTLREWF 1294
            FCNAEGQ+LQ++CDSG +PVLAVK+GR++DFNGKAVGT+S SQLF+ P+IPEAR L+EWF
Sbjct: 464  FCNAEGQRLQNMCDSGGFPVLAVKSGRVSDFNGKAVGTISTSQLFIEPDIPEARRLKEWF 523

Query: 1293 DTEGKDITSVSVSRETVGVGRIDVRKTVSQIKDEQLGTSEKPDWITVKATINFIKVDNFC 1114
            + EG++  SVS+SRE   VGR ++ KT+SQIKDE+LGTSEKPDWIT+ AT+ +IK DNFC
Sbjct: 524  EKEGRNTPSVSISRELSSVGRSEIHKTISQIKDEKLGTSEKPDWITINATVIYIKADNFC 583

Query: 1113 YTACPLMVGERQCNKKVNNNGDGQYRCEKCDQSVAQCDYRYILQFQIKDHTGLTWVTAFQ 934
            YTACP+M G+R C+KKV NNGDG++RCEKCDQS+ +CDYRYILQ Q++DHTG+TWVTAFQ
Sbjct: 584  YTACPIMAGDRPCSKKVTNNGDGKWRCEKCDQSMDECDYRYILQLQLQDHTGITWVTAFQ 643

Query: 933  ECGEEIIGVSAKELYDLKHE--DEDSFGDAIRRVMFTDYVFKLKVKEETFSDEQRVKSTV 760
            E GEEI+G+SAK+L+ +K+E  D++SF   +R+V+F+ +V KLKVKEETFSDEQRVKSTV
Sbjct: 644  ESGEEIMGISAKDLHFMKYENQDDESFSKILRQVLFSKFVIKLKVKEETFSDEQRVKSTV 703

Query: 759  VKAEKLDVSSESRFLLDMINRLVEDHNAFLGKAANVVMESGMISTGLGVNQASMMNSTGM 580
            V+AEK++ SS+SRFLL+++ +    ++  +  A+NV           G++         +
Sbjct: 704  VRAEKVNHSSQSRFLLEIMEKYKSGNS--IPSASNVESNYPNSGANTGIDSIGSRIGGSL 761

Query: 579  RTNHVGHGS----PYNSTKNAIGGTG---------VSVFCNSCGGTGHNERNCPSIIN 445
             +N VG  S     +    N +G  G          ++ C SCG T H+  NCPS IN
Sbjct: 762  NSNQVGKSSFAAREFGLQTNQVGQYGNQFSAGYPTHNLSCISCGATSHSSANCPSTIN 819