BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009578
         (999 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633446.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH...   227   4e-57
emb|CBI25341.3| unnamed protein product [Vitis vinifera]              227   4e-57
ref|XP_002520888.1| snf2 histone linker phd ring helicase, putat...   222   1e-55
ref|XP_003615435.1| ATP-dependent helicase, putative [Medicago t...   217   3e-54
ref|XP_002329202.1| chromatin remodeling complex subunit [Populu...   217   4e-54

>ref|XP_003633446.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Vitis vinifera]
          Length = 1704

 Score =  227 bits (578), Expect = 4e-57
 Identities = 122/284 (42%), Positives = 168/284 (59%), Gaps = 4/284 (1%)
 Frame = +2

Query: 158 MARKKQARPYRSGGLMESVDS---VKGNSNKSAKCDDXXXXXXXXXXXXXTSRFVEIDRS 328
           M R+KQ +P+RS G++E +++    +G  N   +                T  FVE+DR+
Sbjct: 1   MGRRKQPKPHRSVGVVERLETQETAEGELNSQQE-----HAQGDEVGDAETPLFVEVDRT 55

Query: 329 SWTSDEHLDIAEVIVTDIRPRGKLLSYGLTEDVYMDSKYSFRFRLRNVEDYSERIKLGHW 508
            W S EHLDI+E+++ D+  R +   Y L E  Y +SK   RFRL N   +  RI+LGHW
Sbjct: 56  GWGSGEHLDISEIVLNDLNLREEFHGYSLGEGFYENSKCCLRFRLCNANQFVGRIRLGHW 115

Query: 509 PKVETDHIFLEFIDTSKVEDS-EKDDVVFSGNFDGPDDGVSGLAHLVSQXXXXXXXXXXX 685
           P V    I LEF++    E+  E D V+ SG FDGPD+GVSGL HL              
Sbjct: 116 PVVAASSISLEFVEKRVSEEGIETDSVILSGIFDGPDEGVSGLVHLSRLKLLTLRPVLGV 175

Query: 686 XXXXDALILTMRVEILRSAFDACDSLLDVTRQPWKRSMVSVMAWLRPEVTTQEGIYGIDR 865
                   + +RVEILR+AFDAC+SLLD +R  WK+SM+SVMAWLRPEVTT E  YG+ +
Sbjct: 176 TFSEGVSFVRLRVEILRTAFDACESLLDNSRPLWKKSMMSVMAWLRPEVTTSEARYGVAK 235

Query: 866 SNFVDLDSQMDTDDDHIESRRKMRFNAADFYDAIKPPKDAPMLE 997
           S  +D+DS M  D   ++S++   F+AA FY+AIKP K+ P+L+
Sbjct: 236 SKEMDIDSNMGMDVGDLDSKKHQNFDAAGFYEAIKPSKEDPLLD 279


>emb|CBI25341.3| unnamed protein product [Vitis vinifera]
          Length = 1717

 Score =  227 bits (578), Expect = 4e-57
 Identities = 122/284 (42%), Positives = 168/284 (59%), Gaps = 4/284 (1%)
 Frame = +2

Query: 158 MARKKQARPYRSGGLMESVDS---VKGNSNKSAKCDDXXXXXXXXXXXXXTSRFVEIDRS 328
           M R+KQ +P+RS G++E +++    +G  N   +                T  FVE+DR+
Sbjct: 1   MGRRKQPKPHRSVGVVERLETQETAEGELNSQQE-----HAQGDEVGDAETPLFVEVDRT 55

Query: 329 SWTSDEHLDIAEVIVTDIRPRGKLLSYGLTEDVYMDSKYSFRFRLRNVEDYSERIKLGHW 508
            W S EHLDI+E+++ D+  R +   Y L E  Y +SK   RFRL N   +  RI+LGHW
Sbjct: 56  GWGSGEHLDISEIVLNDLNLREEFHGYSLGEGFYENSKCCLRFRLCNANQFVGRIRLGHW 115

Query: 509 PKVETDHIFLEFIDTSKVEDS-EKDDVVFSGNFDGPDDGVSGLAHLVSQXXXXXXXXXXX 685
           P V    I LEF++    E+  E D V+ SG FDGPD+GVSGL HL              
Sbjct: 116 PVVAASSISLEFVEKRVSEEGIETDSVILSGIFDGPDEGVSGLVHLSRLKLLTLRPVLGV 175

Query: 686 XXXXDALILTMRVEILRSAFDACDSLLDVTRQPWKRSMVSVMAWLRPEVTTQEGIYGIDR 865
                   + +RVEILR+AFDAC+SLLD +R  WK+SM+SVMAWLRPEVTT E  YG+ +
Sbjct: 176 TFSEGVSFVRLRVEILRTAFDACESLLDNSRPLWKKSMMSVMAWLRPEVTTSEARYGVAK 235

Query: 866 SNFVDLDSQMDTDDDHIESRRKMRFNAADFYDAIKPPKDAPMLE 997
           S  +D+DS M  D   ++S++   F+AA FY+AIKP K+ P+L+
Sbjct: 236 SKEMDIDSNMGMDVGDLDSKKHQNFDAAGFYEAIKPSKEDPLLD 279


>ref|XP_002520888.1| snf2 histone linker phd ring helicase, putative [Ricinus communis]
           gi|223540019|gb|EEF41597.1| snf2 histone linker phd ring
           helicase, putative [Ricinus communis]
          Length = 1588

 Score =  222 bits (566), Expect = 1e-55
 Identities = 121/282 (42%), Positives = 171/282 (60%), Gaps = 3/282 (1%)
 Frame = +2

Query: 158 MARKKQARPYRSGGLM--ESVDSVKGNSNKSAKCDDXXXXXXXXXXXXXTSRFVEIDRSS 331
           M R+KQARP RSGGL+   S    + +  K+ K D                 +VE+D+S+
Sbjct: 1   MGRRKQARPNRSGGLVIANSASEAELDKQKAPKTDSAEKAIPVSRPY-----YVEVDKSN 55

Query: 332 WTSDEHLDIAEVIVTDIRPRGKLLSYGLTEDVYMDSKYSFRFRLRNVEDYS-ERIKLGHW 508
           W S++H DI+EVI+ D+       S  +  +   +SKYS R R+ NV+ +  +RIKLG+W
Sbjct: 56  WVSNDHFDISEVILNDLNLGEAYSSCRIKSNFSQESKYSLRVRVCNVDGFVLDRIKLGYW 115

Query: 509 PKVETDHIFLEFIDTSKVEDSEKDDVVFSGNFDGPDDGVSGLAHLVSQXXXXXXXXXXXX 688
           P + +  I LE I+ S VED E   V+FSG+FDGPD+G++ L HL+S             
Sbjct: 116 PVLSSSDISLECIEESMVEDKEMQSVIFSGSFDGPDEGITSLVHLISMEFLTLRPVLGFN 175

Query: 689 XXXDALILTMRVEILRSAFDACDSLLDVTRQPWKRSMVSVMAWLRPEVTTQEGIYGIDRS 868
              + + L +RVEIL+ AFD+C SLL+ TRQ WK+SM++VMAWLRPEV T E  YG+ +S
Sbjct: 176 YSEEMMSLRVRVEILKKAFDSCKSLLENTRQLWKKSMMNVMAWLRPEVVTSEARYGVTKS 235

Query: 869 NFVDLDSQMDTDDDHIESRRKMRFNAADFYDAIKPPKDAPML 994
             VDL  +M  D  +  SR++ RF+ A FY+AIKP K +P+L
Sbjct: 236 TEVDLVGEMGNDISY--SRKRPRFDVAGFYEAIKPSKSSPIL 275


>ref|XP_003615435.1| ATP-dependent helicase, putative [Medicago truncatula]
           gi|355516770|gb|AES98393.1| ATP-dependent helicase,
           putative [Medicago truncatula]
          Length = 1764

 Score =  217 bits (553), Expect = 3e-54
 Identities = 116/278 (41%), Positives = 165/278 (59%), Gaps = 1/278 (0%)
 Frame = +2

Query: 167 KKQARPYRSGGLMESVDSVKGNSNKSAKCD-DXXXXXXXXXXXXXTSRFVEIDRSSWTSD 343
           +++++P+RSGG++         +N SA+ + +                FVE+DRS W SD
Sbjct: 3   RRKSKPHRSGGIIVE-------TNASAETELEVGGKENNDFGDIYKPYFVEVDRSGWLSD 55

Query: 344 EHLDIAEVIVTDIRPRGKLLSYGLTEDVYMDSKYSFRFRLRNVEDYSERIKLGHWPKVET 523
           EHLDI+E+++ D+        + L+ED Y D ++S RFRL N+     RIKLGHWP +  
Sbjct: 56  EHLDISEIVLRDLNIGEGFYGFELSEDFYQDPQFSLRFRLCNIGSDLGRIKLGHWPVLPY 115

Query: 524 DHIFLEFIDTSKVEDSEKDDVVFSGNFDGPDDGVSGLAHLVSQXXXXXXXXXXXXXXXDA 703
             I LEF+  + V+D+E   V+ SG FDGPD+ VSGL HL S                D 
Sbjct: 116 TDIHLEFVKRASVDDTETCTVLLSGIFDGPDESVSGLVHLASMKFVTLRAVLGIKLSDDI 175

Query: 704 LILTMRVEILRSAFDACDSLLDVTRQPWKRSMVSVMAWLRPEVTTQEGIYGIDRSNFVDL 883
             L MRVE+L+SAFDAC+SL++ +R+PWK+SM++VM+WLRPE+ T E  YG      +++
Sbjct: 176 PSLRMRVEVLKSAFDACESLIEGSRKPWKKSMMNVMSWLRPEIMTSEVKYGFSSYMEMEV 235

Query: 884 DSQMDTDDDHIESRRKMRFNAADFYDAIKPPKDAPMLE 997
           D Q D  DD   + +  RF+ A FY+AIKP K  PMLE
Sbjct: 236 DLQTDMADDGGYAGKCSRFDPAGFYEAIKPSKTEPMLE 273


>ref|XP_002329202.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222870983|gb|EEF08114.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 1320

 Score =  217 bits (552), Expect = 4e-54
 Identities = 119/285 (41%), Positives = 163/285 (57%), Gaps = 5/285 (1%)
 Frame = +2

Query: 158 MARKKQARPYRSGGLM---ESVDSVKGNSNKSAKCDDXXXXXXXXXXXXXTSRFVEIDRS 328
           M R+KQARP+RSGGL+    +  S         K                   FVE++R+
Sbjct: 1   MGRRKQARPHRSGGLIIQNNAAASASAELKNQRKASSSDAQPTELVGIDEQPYFVEVERN 60

Query: 329 SWTSDEHLDIAEVIVTDIRPRGKLLSYGLTEDVYMDSKYSFRFRLRNV-EDYSERIKLGH 505
           SW S+ H D +E+++  +  R +  S+ +T+  Y DSKYS RFR+ NV +    RIKLGH
Sbjct: 61  SWASNHHRDASELVLHGLNLRQEYSSFRVTDGFYHDSKYSLRFRVSNVKQSVLSRIKLGH 120

Query: 506 WPKVETDHIFLEFIDTSKVE-DSEKDDVVFSGNFDGPDDGVSGLAHLVSQXXXXXXXXXX 682
           WP   +  I LE I+ S VE D E + V+FSG+FDGPD+G++GL HL +           
Sbjct: 121 WPVFSSSDISLELIEKSMVEEDREVESVIFSGSFDGPDEGITGLVHLTNMEFLTLRPVLG 180

Query: 683 XXXXXDALILTMRVEILRSAFDACDSLLDVTRQPWKRSMVSVMAWLRPEVTTQEGIYGID 862
                    L MRVEIL  AFDAC+SLL+ TRQ WK+SM++VMAWLRPEV T E  Y   
Sbjct: 181 VDFSEKMTPLRMRVEILEKAFDACESLLESTRQIWKKSMMNVMAWLRPEVMTSEARYRHA 240

Query: 863 RSNFVDLDSQMDTDDDHIESRRKMRFNAADFYDAIKPPKDAPMLE 997
           +S  ++++   +  DD   S ++ +F+ A  Y+AIKP K  PMLE
Sbjct: 241 KSTEMEVNMAAEIGDDTSNSGKRAQFDVAGLYEAIKPSKSDPMLE 285