BLASTX nr result
ID: Coptis24_contig00009516
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00009516
(1708 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI15328.3| unnamed protein product [Vitis vinifera] 615 e-173
ref|XP_002265397.2| PREDICTED: pentatricopeptide repeat-containi... 603 e-170
ref|XP_003536123.1| PREDICTED: pentatricopeptide repeat-containi... 595 e-167
ref|XP_004138218.1| PREDICTED: pentatricopeptide repeat-containi... 589 e-166
ref|XP_002514631.1| pentatricopeptide repeat-containing protein,... 585 e-165
>emb|CBI15328.3| unnamed protein product [Vitis vinifera]
Length = 532
Score = 615 bits (1585), Expect = e-173
Identities = 320/537 (59%), Positives = 389/537 (72%), Gaps = 19/537 (3%)
Frame = +3
Query: 24 MWRAS------HLRRFLLCTISTPSIKSQNLSSSLLAHSSKPISSH-FSNLLFLYPKTLS 182
MWR+S LRR LL S+ S S + SSS SS + S+ S L L P L
Sbjct: 1 MWRSSTPLTSLQLRRLLLRCFSSSSSSSSSSSSS---SSSSLVQSYCLSPTLSLDPYCLC 57
Query: 183 TS----TPPSF--------EHNNKHLPTTENISQEITQELLKHTNEDSLPLPQRLDLHFS 326
+S PSF + NN I+Q ++ ELLK + + +P+ QRL L FS
Sbjct: 58 SSQRHFVSPSFPLSRRFSSQPNNSADDDHSQIAQSLSSELLKDPDSEPVPIIQRLQLSFS 117
Query: 327 YIQLTPSLYLQVLNQSSEAGRSVLDFHQWVSTRPGFKHDDETFSYIVDYFGRRKDFKVIH 506
+I +P L LQ LN S +AGR+VL F++W+S+ P F H DET S+ VDYFGRRKDFK IH
Sbjct: 118 HITPSPPLILQTLNTSPDAGRTVLGFYKWLSSNPKFVHSDETISFFVDYFGRRKDFKAIH 177
Query: 507 DVLVSGKGITGPKTLASCIDRLVRAGRDSQTVAFFERMEKEYGFVRDRDSLKLVVTALCD 686
+VL+ G+ G KTL S IDRLVRAGR +Q V+FF+RME +YGF RDR+SL +VV+ LC+
Sbjct: 178 EVLMDGRNFAGAKTLESAIDRLVRAGRATQVVSFFDRMEVDYGFRRDRESLTMVVSKLCE 237
Query: 687 HGFASHAEKMVKSLANEFFPDEVTCDILVRGWCVDGKLDEAKRLAGEMYRGGFELGTLAY 866
HGFASHAEK+VK++ANE FP+E CD+L++GWCVDGKLDEA+RLA EM+RGGFE+GT+AY
Sbjct: 238 HGFASHAEKVVKNVANEIFPNETICDLLIKGWCVDGKLDEARRLAEEMFRGGFEIGTMAY 297
Query: 867 NSILDCVCKLCRKKDPFRLQGEAEKILIEMDVAGIPRNTETFNVLINNFCKIRKTEEALN 1046
NSILDC+CKLCRKKDPFRL+ EAEKIL++MDVAG+PRN ETFNVLI N CKIRKTE+A+
Sbjct: 298 NSILDCICKLCRKKDPFRLESEAEKILVDMDVAGVPRNVETFNVLITNLCKIRKTEDAMK 357
Query: 1047 LFERMGEWGCAPDSTTYLVMIRSLFQAARVGEGDEMIDRMKSAGFGDAIDKKAYYGFLKI 1226
LF RMGEWGC P+ TT+LV+ RSL+QAARVGEGDEMIDRMKSAGFG+A+DKKAYY F+KI
Sbjct: 358 LFYRMGEWGCYPNETTFLVLTRSLYQAARVGEGDEMIDRMKSAGFGNALDKKAYYEFIKI 417
Query: 1227 LCGIERIDHAMEIFKKMKFDGCKPGVPTYDLLIGKLGAHGRGERANTLFREAMKKELPVQ 1406
LCGIERIDHAM +F KMK DGCKPG+ TYDLL+GKL AHGR ++AN LF EA+ + +PV+
Sbjct: 418 LCGIERIDHAMSLFSKMKEDGCKPGIKTYDLLMGKLCAHGRLDKANALFSEAVNRGVPVE 477
Query: 1407 PIVYKVDPRFAXXXXXXXXXXXXXXXLPEKMAXXXXXXXXXXXSFVKKPTKMMRRAF 1577
YK+DPRF LPEKMA SFVKKP K MRRAF
Sbjct: 478 SKAYKLDPRFV-KKPTVAKKEKKRETLPEKMARKRRRLRKIRLSFVKKP-KRMRRAF 532
>ref|XP_002265397.2| PREDICTED: pentatricopeptide repeat-containing protein At5g60960,
mitochondrial-like [Vitis vinifera]
Length = 516
Score = 603 bits (1555), Expect = e-170
Identities = 295/471 (62%), Positives = 363/471 (77%)
Frame = +3
Query: 165 YPKTLSTSTPPSFEHNNKHLPTTENISQEITQELLKHTNEDSLPLPQRLDLHFSYIQLTP 344
+P + S+ P+ ++ H I+Q ++ ELLK + + +P+ QRL L FS+I +P
Sbjct: 52 FPLSRRFSSQPNNSADDDH----SQIAQSLSSELLKDPDSEPVPIIQRLQLSFSHITPSP 107
Query: 345 SLYLQVLNQSSEAGRSVLDFHQWVSTRPGFKHDDETFSYIVDYFGRRKDFKVIHDVLVSG 524
L LQ LN S +AGR+VL F++W+S+ P F H DET S+ VDYFGRRKDFK IH+VL+ G
Sbjct: 108 PLILQTLNTSPDAGRTVLGFYKWLSSNPKFVHSDETISFFVDYFGRRKDFKAIHEVLMDG 167
Query: 525 KGITGPKTLASCIDRLVRAGRDSQTVAFFERMEKEYGFVRDRDSLKLVVTALCDHGFASH 704
+ G KTL S IDRLVRAGR +Q V+FF+RME +YGF RDR+SL +VV+ LC+HGFASH
Sbjct: 168 RNFAGAKTLESAIDRLVRAGRATQVVSFFDRMEVDYGFRRDRESLTMVVSKLCEHGFASH 227
Query: 705 AEKMVKSLANEFFPDEVTCDILVRGWCVDGKLDEAKRLAGEMYRGGFELGTLAYNSILDC 884
AEK+VK++ANE FP+E CD+L++GWCVDGKLDEA+RLA EM+RGGFE+GT+AYNSILDC
Sbjct: 228 AEKVVKNVANEIFPNETICDLLIKGWCVDGKLDEARRLAEEMFRGGFEIGTMAYNSILDC 287
Query: 885 VCKLCRKKDPFRLQGEAEKILIEMDVAGIPRNTETFNVLINNFCKIRKTEEALNLFERMG 1064
+CKLCRKKDPFRL+ EAEKIL++MDVAG+PRN ETFNVLI N CKIRKTE+A+ LF RMG
Sbjct: 288 ICKLCRKKDPFRLESEAEKILVDMDVAGVPRNVETFNVLITNLCKIRKTEDAMKLFYRMG 347
Query: 1065 EWGCAPDSTTYLVMIRSLFQAARVGEGDEMIDRMKSAGFGDAIDKKAYYGFLKILCGIER 1244
EWGC P+ TT+LV+ RSL+QAARVGEGDEMIDRMKSAGFG+A+DKKAYY F+KILCGIER
Sbjct: 348 EWGCYPNETTFLVLTRSLYQAARVGEGDEMIDRMKSAGFGNALDKKAYYEFIKILCGIER 407
Query: 1245 IDHAMEIFKKMKFDGCKPGVPTYDLLIGKLGAHGRGERANTLFREAMKKELPVQPIVYKV 1424
IDHAM +F KMK DGCKPG+ TYDLL+GKL AHGR ++AN LF EA+ + +PV+ YK+
Sbjct: 408 IDHAMSLFSKMKEDGCKPGIKTYDLLMGKLCAHGRLDKANALFSEAVNRGVPVESKAYKL 467
Query: 1425 DPRFAXXXXXXXXXXXXXXXLPEKMAXXXXXXXXXXXSFVKKPTKMMRRAF 1577
DPRF LPEKMA SFVKKP K MRRAF
Sbjct: 468 DPRFV-KKPTVAKKEKKRETLPEKMARKRRRLRKIRLSFVKKP-KRMRRAF 516
>ref|XP_003536123.1| PREDICTED: pentatricopeptide repeat-containing protein At5g60960,
mitochondrial-like [Glycine max]
Length = 509
Score = 595 bits (1533), Expect = e-167
Identities = 308/515 (59%), Positives = 367/515 (71%), Gaps = 5/515 (0%)
Frame = +3
Query: 42 LRRFLLCTISTPSIKSQNLSSSLL--AHSSKPISSHFSNLLFLYPKTLSTSTPPSFEHNN 215
LRR LL + S P + S L HSS SHF Y +TL T PSF
Sbjct: 9 LRRLLLRSRSLPFTSPSPIHHSPLFPRHSS----SHF------YSRTLFT---PSF-FIT 54
Query: 216 KHLPT---TENISQEITQELLKHTNEDSLPLPQRLDLHFSYIQLTPSLYLQVLNQSSEAG 386
+H + T+ I+ ++ ELLK + D+L + QRL+L FS+I TP+L LQ LN S +AG
Sbjct: 55 RHFSSETQTDEIASSLSSELLKEPDSDALSVSQRLNLSFSHITPTPNLILQTLNLSPQAG 114
Query: 387 RSVLDFHQWVSTRPGFKHDDETFSYIVDYFGRRKDFKVIHDVLVSGKGITGPKTLASCID 566
R+VL FHQW+S+ P F H D+T SY VDYFGRRKDFK HDVL + GPKTLAS ID
Sbjct: 115 RTVLGFHQWLSSNPQFSHTDDTLSYFVDYFGRRKDFKATHDVLAAASPAAGPKTLASAID 174
Query: 567 RLVRAGRDSQTVAFFERMEKEYGFVRDRDSLKLVVTALCDHGFASHAEKMVKSLANEFFP 746
RLVRAGR SQ V FFERME++YG RDRDSLK+VV LC GFAS+AEKMVK LA EFFP
Sbjct: 175 RLVRAGRSSQAVQFFERMERDYGLKRDRDSLKVVVEKLCSEGFASYAEKMVKDLAREFFP 234
Query: 747 DEVTCDILVRGWCVDGKLDEAKRLAGEMYRGGFELGTLAYNSILDCVCKLCRKKDPFRLQ 926
DE TCD+L+RGWC+DGKLDEA+RLAGEMYRGGF+LG AYN++LDCVCKLCR+KDPF+L
Sbjct: 235 DEATCDMLIRGWCIDGKLDEAQRLAGEMYRGGFDLGVGAYNAMLDCVCKLCREKDPFQLH 294
Query: 927 GEAEKILIEMDVAGIPRNTETFNVLINNFCKIRKTEEALNLFERMGEWGCAPDSTTYLVM 1106
EAEK+L+EM+ G+PRNTETFNVLI N CKIRKTE+AL L MGEWGC P+ TT+LV+
Sbjct: 295 SEAEKVLVEMEYRGVPRNTETFNVLITNLCKIRKTEDALGLLHSMGEWGCYPNETTFLVL 354
Query: 1107 IRSLFQAARVGEGDEMIDRMKSAGFGDAIDKKAYYGFLKILCGIERIDHAMEIFKKMKFD 1286
IRSL+QAAR+ EGDEMIDRM+SAGFG+ +DKKAYY FLKILCGIER+DHA+ +F MK D
Sbjct: 355 IRSLYQAARLEEGDEMIDRMRSAGFGEFLDKKAYYQFLKILCGIERVDHALSVFAMMKDD 414
Query: 1287 GCKPGVPTYDLLIGKLGAHGRGERANTLFREAMKKELPVQPIVYKVDPRFAXXXXXXXXX 1466
GC+PGV TYDLL+GKLGAH R ++ N LF EA + LPV Y VDPR+
Sbjct: 415 GCEPGVITYDLLMGKLGAHNRIDKVNALFNEAKSRGLPVILKEYAVDPRYLKKKKKVVKG 474
Query: 1467 XXXXXXLPEKMAXXXXXXXXXXXSFVKKPTKMMRR 1571
LPEKMA S+VKKP ++M R
Sbjct: 475 VKKRETLPEKMARKRSRLKQIRLSYVKKPKRVMGR 509
>ref|XP_004138218.1| PREDICTED: pentatricopeptide repeat-containing protein At5g60960,
mitochondrial-like [Cucumis sativus]
gi|449477122|ref|XP_004154936.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g60960,
mitochondrial-like [Cucumis sativus]
Length = 522
Score = 589 bits (1518), Expect = e-166
Identities = 299/518 (57%), Positives = 366/518 (70%), Gaps = 6/518 (1%)
Frame = +3
Query: 42 LRRFLLCTISTPSIKSQNLSSS--LLAHSSKPISSHFSN----LLFLYPKTLSTSTPPSF 203
LR +L ++S+ S S S+ LL + + HF + L F P LS S S
Sbjct: 9 LRTLVLRSLSSSSTNSLKDSARTVLLHRNLTSLFHHFRHHGAALRFSSPLYLSLSHSFSS 68
Query: 204 EHNNKHLPTTENISQEITQELLKHTNEDSLPLPQRLDLHFSYIQLTPSLYLQVLNQSSEA 383
E N H+ T SQ + ELLK + D LP+ QRL L FS+++ P L LN SSEA
Sbjct: 69 ESVNNHVDQT---SQSLASELLKDPDSDPLPITQRLQLSFSHVKPNPELVRNTLNLSSEA 125
Query: 384 GRSVLDFHQWVSTRPGFKHDDETFSYIVDYFGRRKDFKVIHDVLVSGKGITGPKTLASCI 563
GR+VL F++W+ + P F H DET SY VD+FGRRKDF + +VL G GI GPKTL S I
Sbjct: 126 GRTVLGFNEWLVSNPDFHHTDETISYFVDFFGRRKDFNAVQEVLAKGLGINGPKTLKSSI 185
Query: 564 DRLVRAGRDSQTVAFFERMEKEYGFVRDRDSLKLVVTALCDHGFASHAEKMVKSLANEFF 743
R RAGR ++ ++FFE ME YG RD++SL++VV LC++GF SHAEKMVK LANEFF
Sbjct: 186 HRFARAGRPTKLISFFETMETNYGLKRDKESLRMVVEKLCENGFGSHAEKMVKDLANEFF 245
Query: 744 PDEVTCDILVRGWCVDGKLDEAKRLAGEMYRGGFELGTLAYNSILDCVCKLCRKKDPFRL 923
PDE CD L++GWCV+ KLDEAKRLAGEMYRGGFELGT AYN++LDCVCKLCRKKDPFRL
Sbjct: 246 PDEAICDTLIKGWCVNEKLDEAKRLAGEMYRGGFELGTTAYNALLDCVCKLCRKKDPFRL 305
Query: 924 QGEAEKILIEMDVAGIPRNTETFNVLINNFCKIRKTEEALNLFERMGEWGCAPDSTTYLV 1103
EAE+IL+EMD G+PRN ETFNVLINN CKIR+T +A+NLF RMGEWGC P++ T+L+
Sbjct: 306 DSEAEEILVEMDCRGVPRNVETFNVLINNLCKIRRTTDAVNLFHRMGEWGCHPNAETFLI 365
Query: 1104 MIRSLFQAARVGEGDEMIDRMKSAGFGDAIDKKAYYGFLKILCGIERIDHAMEIFKKMKF 1283
+IRSL+QAAR GEGDEMIDRMKS G+GDA+DKKAYY F+ ILCGIERIDHA+ +F KMK
Sbjct: 366 LIRSLYQAARTGEGDEMIDRMKSVGYGDALDKKAYYEFMNILCGIERIDHALVVFAKMKK 425
Query: 1284 DGCKPGVPTYDLLIGKLGAHGRGERANTLFREAMKKELPVQPIVYKVDPRFAXXXXXXXX 1463
DGC+PG+ TYDLL+GKL AH R ++AN+LF EA K+ +PV P Y+VDP++
Sbjct: 426 DGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYV-KKPKDKK 484
Query: 1464 XXXXXXXLPEKMAXXXXXXXXXXXSFVKKPTKMMRRAF 1577
LPEKMA SFVKKP + MRRAF
Sbjct: 485 VAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRRAF 522
>ref|XP_002514631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223546235|gb|EEF47737.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 569
Score = 585 bits (1509), Expect = e-165
Identities = 286/491 (58%), Positives = 359/491 (73%), Gaps = 2/491 (0%)
Frame = +3
Query: 111 LAHSSKPISSHFSNLLFLYPKTLSTSTPPSFEHNNKHLPTTENISQEITQELLKHTNEDS 290
LA SS +HF FL + + NN L I+Q I+ EL+K+ N DS
Sbjct: 80 LAFSSYSAPTHFPKFAFLPLSLSKPFSTQTLNPNNNVLEDPNPIAQSISAELIKNPNSDS 139
Query: 291 LPLPQRLDLHFSYIQ--LTPSLYLQVLNQSSEAGRSVLDFHQWVSTRPGFKHDDETFSYI 464
L + QRL+LHFS+I +TPS+ LQ LN S +AGR+VL FHQW+ FK+ DET S+
Sbjct: 140 LSILQRLNLHFSHINNSITPSIILQTLNLSPDAGRTVLGFHQWLVKVANFKNTDETISFF 199
Query: 465 VDYFGRRKDFKVIHDVLVSGKGITGPKTLASCIDRLVRAGRDSQTVAFFERMEKEYGFVR 644
+DYFGRRKDF+ H++L K + G K S ++RLVRAGR ++ + FF+RME++YGF R
Sbjct: 200 IDYFGRRKDFQSTHELLCDSKDVIGYKCFESMVNRLVRAGRATKVMGFFDRMERDYGFKR 259
Query: 645 DRDSLKLVVTALCDHGFASHAEKMVKSLANEFFPDEVTCDILVRGWCVDGKLDEAKRLAG 824
DR++L+LVV LCD+G+AS+AEKMVK+LANE FPDE CD+L++GWCVDGKLDEAKRLAG
Sbjct: 260 DRENLRLVVKMLCDNGYASYAEKMVKNLANEIFPDENICDLLIKGWCVDGKLDEAKRLAG 319
Query: 825 EMYRGGFELGTLAYNSILDCVCKLCRKKDPFRLQGEAEKILIEMDVAGIPRNTETFNVLI 1004
EMYRGGFE+GT+AYN+ILDCVCKLCR+KDPF+++ E EK+L+EMD G+PRN ETFNVLI
Sbjct: 320 EMYRGGFEIGTVAYNAILDCVCKLCREKDPFKIESEVEKVLVEMDTRGVPRNVETFNVLI 379
Query: 1005 NNFCKIRKTEEALNLFERMGEWGCAPDSTTYLVMIRSLFQAARVGEGDEMIDRMKSAGFG 1184
N CK+RKT++ALNLF RM EWGC PD TT+LV+IRSL+QAARVGEGDEMIDRMKS+G+G
Sbjct: 380 TNLCKMRKTQDALNLFNRMREWGCDPDDTTFLVLIRSLYQAARVGEGDEMIDRMKSSGYG 439
Query: 1185 DAIDKKAYYGFLKILCGIERIDHAMEIFKKMKFDGCKPGVPTYDLLIGKLGAHGRGERAN 1364
+ +DKKAYYGFLKILCGIER++HA+ +F+ MK DGCKPG+ TYDLLIGK R ++ N
Sbjct: 440 NKLDKKAYYGFLKILCGIERLEHAVSVFEMMKADGCKPGIKTYDLLIGKWCTRNRVDKGN 499
Query: 1365 TLFREAMKKELPVQPIVYKVDPRFAXXXXXXXXXXXXXXXLPEKMAXXXXXXXXXXXSFV 1544
LF EA++ +PV P YKVD ++ LPEKMA SFV
Sbjct: 500 ALFNEALRNGVPVAPKEYKVDEKY-MKKPKAVKKEKKRETLPEKMARKRRRLKQIRLSFV 558
Query: 1545 KKPTKMMRRAF 1577
KKP KMMRR F
Sbjct: 559 KKPKKMMRRPF 569