BLASTX nr result
ID: Coptis24_contig00008997
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00008997
(1058 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003530650.1| PREDICTED: ribosomal RNA large subunit methy... 307 e-109
ref|XP_004145570.1| PREDICTED: dual-specificity RNA methyltransf... 297 e-105
ref|XP_002264209.2| PREDICTED: uncharacterized protein LOC100267... 290 e-103
emb|CBI32146.3| unnamed protein product [Vitis vinifera] 290 e-103
ref|XP_002886632.1| radical SAM domain-containing protein [Arabi... 298 e-103
>ref|XP_003530650.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
[Glycine max]
Length = 445
Score = 307 bits (787), Expect(3) = e-109
Identities = 151/170 (88%), Positives = 165/170 (97%)
Frame = +1
Query: 544 QILFTLDDGLVIETVVIPCKKGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIIEQ 723
+ILFTL+DGLVIETVVIPC +GRTTVCVSSQVGCAMNCQFCYTGRMGL+RHLTAAEI+EQ
Sbjct: 160 KILFTLEDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLRRHLTAAEIVEQ 219
Query: 724 TVFVRRVLSGEVGSISNVVFMGMGEPLHNIDSVIKAANIMVDEQGLQFSPRKVTISTSGL 903
VF RR+L+ EVGSI+NVVFMGMGEPLHNID+VIKAA+IMVDEQGLQFSPRKVTISTSGL
Sbjct: 220 AVFARRLLTDEVGSITNVVFMGMGEPLHNIDNVIKAADIMVDEQGLQFSPRKVTISTSGL 279
Query: 904 VPQLKRFLNESNCSLAVSLNATTNEVRNWIMPINRKYKLEMLLGTLREEL 1053
VPQLKRFL+ESNC+LAVSLNATT+EVRNWIMPINRKYKLE+LL TLREEL
Sbjct: 280 VPQLKRFLHESNCALAVSLNATTDEVRNWIMPINRKYKLELLLQTLREEL 329
Score = 110 bits (275), Expect(3) = e-109
Identities = 49/70 (70%), Positives = 62/70 (88%)
Frame = +3
Query: 333 QKWVQSIGFRPGQAMMLWKQLYGHGIWAHSSDELEGLNKDFRKALSDLAEFKALSLKDIL 512
+KWVQS G+RPGQAMMLWK++YG+ IWAH DELEGLNKDF+K L++ AEFKAL+ K+I
Sbjct: 93 EKWVQSHGYRPGQAMMLWKRMYGNNIWAHHIDELEGLNKDFKKMLNENAEFKALTQKEIR 152
Query: 513 TAADGTRKVV 542
TA+DGTRK++
Sbjct: 153 TASDGTRKIL 162
Score = 25.8 bits (55), Expect(3) = e-109
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 221 KVLLKGMTYTELE 259
K+LLKGMTY ELE
Sbjct: 81 KMLLKGMTYPELE 93
>ref|XP_004145570.1| PREDICTED: dual-specificity RNA methyltransferase RlmN-like [Cucumis
sativus]
Length = 482
Score = 297 bits (760), Expect(3) = e-105
Identities = 145/170 (85%), Positives = 158/170 (92%)
Frame = +1
Query: 544 QILFTLDDGLVIETVVIPCKKGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIIEQ 723
+ILF L+DGL+IETVVIPC +GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEI+EQ
Sbjct: 197 KILFNLEDGLIIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 256
Query: 724 TVFVRRVLSGEVGSISNVVFMGMGEPLHNIDSVIKAANIMVDEQGLQFSPRKVTISTSGL 903
VF RR+L+ EVG I+NVVFMGMGEPLHNID+VIKA NIMV EQGL FSPRKVT+STSGL
Sbjct: 257 AVFARRLLTSEVGLITNVVFMGMGEPLHNIDNVIKAVNIMVHEQGLHFSPRKVTVSTSGL 316
Query: 904 VPQLKRFLNESNCSLAVSLNATTNEVRNWIMPINRKYKLEMLLGTLREEL 1053
VPQLKRFLNE NC+LAVSLNATT+EVRNWIMPINRKYKL +LL TLREEL
Sbjct: 317 VPQLKRFLNECNCALAVSLNATTDEVRNWIMPINRKYKLGLLLQTLREEL 366
Score = 108 bits (269), Expect(3) = e-105
Identities = 47/70 (67%), Positives = 61/70 (87%)
Frame = +3
Query: 333 QKWVQSIGFRPGQAMMLWKQLYGHGIWAHSSDELEGLNKDFRKALSDLAEFKALSLKDIL 512
+KWVQ+ G+RPGQA+MLWK+LYG IWAH+ DELEGLNKDF+K L + AEF+ALSL++IL
Sbjct: 130 EKWVQAQGYRPGQALMLWKRLYGDNIWAHTGDELEGLNKDFKKMLIENAEFRALSLREIL 189
Query: 513 TAADGTRKVV 542
+ DGTRK++
Sbjct: 190 PSCDGTRKIL 199
Score = 25.8 bits (55), Expect(3) = e-105
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = +2
Query: 218 NKVLLKGMTYTELE 259
+K+LLKG++YTELE
Sbjct: 117 SKMLLKGLSYTELE 130
>ref|XP_002264209.2| PREDICTED: uncharacterized protein LOC100267261 [Vitis vinifera]
Length = 907
Score = 290 bits (741), Expect(3) = e-103
Identities = 140/170 (82%), Positives = 155/170 (91%)
Frame = +1
Query: 544 QILFTLDDGLVIETVVIPCKKGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIIEQ 723
+ILFTLDDGLVIETV+IPC +GR TVCVSSQVGCAMNCQFCYTGRMGL RHLTAAEI+EQ
Sbjct: 157 KILFTLDDGLVIETVIIPCDRGRNTVCVSSQVGCAMNCQFCYTGRMGLTRHLTAAEIVEQ 216
Query: 724 TVFVRRVLSGEVGSISNVVFMGMGEPLHNIDSVIKAANIMVDEQGLQFSPRKVTISTSGL 903
V+ RR+ S EVGSI+NVVFMGMGEP HNI+SVIKAA+IMV +QGL FSPRKVT+STSGL
Sbjct: 217 AVYARRLFSSEVGSITNVVFMGMGEPFHNIESVIKAADIMVHDQGLHFSPRKVTVSTSGL 276
Query: 904 VPQLKRFLNESNCSLAVSLNATTNEVRNWIMPINRKYKLEMLLGTLREEL 1053
VPQLK FL ESNC+LAVSLNATT+EVRNW+MPINRKY L +LL TLREEL
Sbjct: 277 VPQLKHFLRESNCALAVSLNATTDEVRNWVMPINRKYNLSLLLQTLREEL 326
Score = 110 bits (275), Expect(3) = e-103
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +3
Query: 318 MFWFE-QKWVQSIGFRPGQAMMLWKQLYGHGIWAHSSDELEGLNKDFRKALSDLAEFKAL 494
M +FE Q WVQS G+RPGQA+MLWK+LYG+ IWAH DELEGLNKDF+ LS+ AEFKAL
Sbjct: 84 MRYFELQNWVQSHGYRPGQALMLWKRLYGNNIWAHCIDELEGLNKDFKSMLSEHAEFKAL 143
Query: 495 SLKDILTAADGTRKVV 542
+LKD + A+DGTRK++
Sbjct: 144 TLKDSIKASDGTRKIL 159
Score = 23.5 bits (49), Expect(3) = e-103
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 218 NKVLLKGMTYTELE 259
+KVLLKGM Y EL+
Sbjct: 77 SKVLLKGMRYFELQ 90
>emb|CBI32146.3| unnamed protein product [Vitis vinifera]
Length = 439
Score = 290 bits (741), Expect(3) = e-103
Identities = 140/170 (82%), Positives = 155/170 (91%)
Frame = +1
Query: 544 QILFTLDDGLVIETVVIPCKKGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIIEQ 723
+ILFTLDDGLVIETV+IPC +GR TVCVSSQVGCAMNCQFCYTGRMGL RHLTAAEI+EQ
Sbjct: 157 KILFTLDDGLVIETVIIPCDRGRNTVCVSSQVGCAMNCQFCYTGRMGLTRHLTAAEIVEQ 216
Query: 724 TVFVRRVLSGEVGSISNVVFMGMGEPLHNIDSVIKAANIMVDEQGLQFSPRKVTISTSGL 903
V+ RR+ S EVGSI+NVVFMGMGEP HNI+SVIKAA+IMV +QGL FSPRKVT+STSGL
Sbjct: 217 AVYARRLFSSEVGSITNVVFMGMGEPFHNIESVIKAADIMVHDQGLHFSPRKVTVSTSGL 276
Query: 904 VPQLKRFLNESNCSLAVSLNATTNEVRNWIMPINRKYKLEMLLGTLREEL 1053
VPQLK FL ESNC+LAVSLNATT+EVRNW+MPINRKY L +LL TLREEL
Sbjct: 277 VPQLKHFLRESNCALAVSLNATTDEVRNWVMPINRKYNLSLLLQTLREEL 326
Score = 110 bits (275), Expect(3) = e-103
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +3
Query: 318 MFWFE-QKWVQSIGFRPGQAMMLWKQLYGHGIWAHSSDELEGLNKDFRKALSDLAEFKAL 494
M +FE Q WVQS G+RPGQA+MLWK+LYG+ IWAH DELEGLNKDF+ LS+ AEFKAL
Sbjct: 84 MRYFELQNWVQSHGYRPGQALMLWKRLYGNNIWAHCIDELEGLNKDFKSMLSEHAEFKAL 143
Query: 495 SLKDILTAADGTRKVV 542
+LKD + A+DGTRK++
Sbjct: 144 TLKDSIKASDGTRKIL 159
Score = 23.5 bits (49), Expect(3) = e-103
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 218 NKVLLKGMTYTELE 259
+KVLLKGM Y EL+
Sbjct: 77 SKVLLKGMRYFELQ 90
>ref|XP_002886632.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata] gi|297332473|gb|EFH62891.1| radical SAM
domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 458
Score = 298 bits (763), Expect(3) = e-103
Identities = 147/171 (85%), Positives = 159/171 (92%)
Frame = +1
Query: 544 QILFTLDDGLVIETVVIPCKKGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIIEQ 723
+ILFTLDDGLVIETVVIPC +GRTTVCVSSQVGCAMNCQFCYTGRMGLKR+LT AEI+EQ
Sbjct: 173 KILFTLDDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRNLTTAEIVEQ 232
Query: 724 TVFVRRVLSGEVGSISNVVFMGMGEPLHNIDSVIKAANIMVDEQGLQFSPRKVTISTSGL 903
V+ RR+LS EVGSI+NVVFMGMGEP HNID+VIKAANIMVDE GL FSPRKVT+STSGL
Sbjct: 233 AVYARRLLSHEVGSITNVVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGL 292
Query: 904 VPQLKRFLNESNCSLAVSLNATTNEVRNWIMPINRKYKLEMLLGTLREELS 1056
VPQLKRFL ESNC+LAVSLNATT+EVRNWIMPINRKYKL +LL TLRE LS
Sbjct: 293 VPQLKRFLRESNCALAVSLNATTDEVRNWIMPINRKYKLSLLLETLREGLS 343
Score = 101 bits (251), Expect(3) = e-103
Identities = 46/70 (65%), Positives = 59/70 (84%)
Frame = +3
Query: 333 QKWVQSIGFRPGQAMMLWKQLYGHGIWAHSSDELEGLNKDFRKALSDLAEFKALSLKDIL 512
Q+WVQS GFRPGQA+MLWK+LY IWA++ DELEGLNKD ++ +S+ AEF ALS KDI
Sbjct: 106 QEWVQSHGFRPGQALMLWKRLYKDNIWANNVDELEGLNKDLKRMISEHAEFGALSFKDIR 165
Query: 513 TAADGTRKVV 542
+A+DGTRK++
Sbjct: 166 SASDGTRKIL 175
Score = 23.5 bits (49), Expect(3) = e-103
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 212 NKNKVLLKGMTYTELE 259
+ KV+LKGMTY L+
Sbjct: 91 DNQKVILKGMTYAALQ 106