BLASTX nr result

ID: Coptis24_contig00008997 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008997
         (1058 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003530650.1| PREDICTED: ribosomal RNA large subunit methy...   307   e-109
ref|XP_004145570.1| PREDICTED: dual-specificity RNA methyltransf...   297   e-105
ref|XP_002264209.2| PREDICTED: uncharacterized protein LOC100267...   290   e-103
emb|CBI32146.3| unnamed protein product [Vitis vinifera]              290   e-103
ref|XP_002886632.1| radical SAM domain-containing protein [Arabi...   298   e-103

>ref|XP_003530650.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
            [Glycine max]
          Length = 445

 Score =  307 bits (787), Expect(3) = e-109
 Identities = 151/170 (88%), Positives = 165/170 (97%)
 Frame = +1

Query: 544  QILFTLDDGLVIETVVIPCKKGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIIEQ 723
            +ILFTL+DGLVIETVVIPC +GRTTVCVSSQVGCAMNCQFCYTGRMGL+RHLTAAEI+EQ
Sbjct: 160  KILFTLEDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLRRHLTAAEIVEQ 219

Query: 724  TVFVRRVLSGEVGSISNVVFMGMGEPLHNIDSVIKAANIMVDEQGLQFSPRKVTISTSGL 903
             VF RR+L+ EVGSI+NVVFMGMGEPLHNID+VIKAA+IMVDEQGLQFSPRKVTISTSGL
Sbjct: 220  AVFARRLLTDEVGSITNVVFMGMGEPLHNIDNVIKAADIMVDEQGLQFSPRKVTISTSGL 279

Query: 904  VPQLKRFLNESNCSLAVSLNATTNEVRNWIMPINRKYKLEMLLGTLREEL 1053
            VPQLKRFL+ESNC+LAVSLNATT+EVRNWIMPINRKYKLE+LL TLREEL
Sbjct: 280  VPQLKRFLHESNCALAVSLNATTDEVRNWIMPINRKYKLELLLQTLREEL 329



 Score =  110 bits (275), Expect(3) = e-109
 Identities = 49/70 (70%), Positives = 62/70 (88%)
 Frame = +3

Query: 333 QKWVQSIGFRPGQAMMLWKQLYGHGIWAHSSDELEGLNKDFRKALSDLAEFKALSLKDIL 512
           +KWVQS G+RPGQAMMLWK++YG+ IWAH  DELEGLNKDF+K L++ AEFKAL+ K+I 
Sbjct: 93  EKWVQSHGYRPGQAMMLWKRMYGNNIWAHHIDELEGLNKDFKKMLNENAEFKALTQKEIR 152

Query: 513 TAADGTRKVV 542
           TA+DGTRK++
Sbjct: 153 TASDGTRKIL 162



 Score = 25.8 bits (55), Expect(3) = e-109
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +2

Query: 221 KVLLKGMTYTELE 259
           K+LLKGMTY ELE
Sbjct: 81  KMLLKGMTYPELE 93


>ref|XP_004145570.1| PREDICTED: dual-specificity RNA methyltransferase RlmN-like [Cucumis
            sativus]
          Length = 482

 Score =  297 bits (760), Expect(3) = e-105
 Identities = 145/170 (85%), Positives = 158/170 (92%)
 Frame = +1

Query: 544  QILFTLDDGLVIETVVIPCKKGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIIEQ 723
            +ILF L+DGL+IETVVIPC +GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEI+EQ
Sbjct: 197  KILFNLEDGLIIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 256

Query: 724  TVFVRRVLSGEVGSISNVVFMGMGEPLHNIDSVIKAANIMVDEQGLQFSPRKVTISTSGL 903
             VF RR+L+ EVG I+NVVFMGMGEPLHNID+VIKA NIMV EQGL FSPRKVT+STSGL
Sbjct: 257  AVFARRLLTSEVGLITNVVFMGMGEPLHNIDNVIKAVNIMVHEQGLHFSPRKVTVSTSGL 316

Query: 904  VPQLKRFLNESNCSLAVSLNATTNEVRNWIMPINRKYKLEMLLGTLREEL 1053
            VPQLKRFLNE NC+LAVSLNATT+EVRNWIMPINRKYKL +LL TLREEL
Sbjct: 317  VPQLKRFLNECNCALAVSLNATTDEVRNWIMPINRKYKLGLLLQTLREEL 366



 Score =  108 bits (269), Expect(3) = e-105
 Identities = 47/70 (67%), Positives = 61/70 (87%)
 Frame = +3

Query: 333 QKWVQSIGFRPGQAMMLWKQLYGHGIWAHSSDELEGLNKDFRKALSDLAEFKALSLKDIL 512
           +KWVQ+ G+RPGQA+MLWK+LYG  IWAH+ DELEGLNKDF+K L + AEF+ALSL++IL
Sbjct: 130 EKWVQAQGYRPGQALMLWKRLYGDNIWAHTGDELEGLNKDFKKMLIENAEFRALSLREIL 189

Query: 513 TAADGTRKVV 542
            + DGTRK++
Sbjct: 190 PSCDGTRKIL 199



 Score = 25.8 bits (55), Expect(3) = e-105
 Identities = 10/14 (71%), Positives = 14/14 (100%)
 Frame = +2

Query: 218 NKVLLKGMTYTELE 259
           +K+LLKG++YTELE
Sbjct: 117 SKMLLKGLSYTELE 130


>ref|XP_002264209.2| PREDICTED: uncharacterized protein LOC100267261 [Vitis vinifera]
          Length = 907

 Score =  290 bits (741), Expect(3) = e-103
 Identities = 140/170 (82%), Positives = 155/170 (91%)
 Frame = +1

Query: 544  QILFTLDDGLVIETVVIPCKKGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIIEQ 723
            +ILFTLDDGLVIETV+IPC +GR TVCVSSQVGCAMNCQFCYTGRMGL RHLTAAEI+EQ
Sbjct: 157  KILFTLDDGLVIETVIIPCDRGRNTVCVSSQVGCAMNCQFCYTGRMGLTRHLTAAEIVEQ 216

Query: 724  TVFVRRVLSGEVGSISNVVFMGMGEPLHNIDSVIKAANIMVDEQGLQFSPRKVTISTSGL 903
             V+ RR+ S EVGSI+NVVFMGMGEP HNI+SVIKAA+IMV +QGL FSPRKVT+STSGL
Sbjct: 217  AVYARRLFSSEVGSITNVVFMGMGEPFHNIESVIKAADIMVHDQGLHFSPRKVTVSTSGL 276

Query: 904  VPQLKRFLNESNCSLAVSLNATTNEVRNWIMPINRKYKLEMLLGTLREEL 1053
            VPQLK FL ESNC+LAVSLNATT+EVRNW+MPINRKY L +LL TLREEL
Sbjct: 277  VPQLKHFLRESNCALAVSLNATTDEVRNWVMPINRKYNLSLLLQTLREEL 326



 Score =  110 bits (275), Expect(3) = e-103
 Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
 Frame = +3

Query: 318 MFWFE-QKWVQSIGFRPGQAMMLWKQLYGHGIWAHSSDELEGLNKDFRKALSDLAEFKAL 494
           M +FE Q WVQS G+RPGQA+MLWK+LYG+ IWAH  DELEGLNKDF+  LS+ AEFKAL
Sbjct: 84  MRYFELQNWVQSHGYRPGQALMLWKRLYGNNIWAHCIDELEGLNKDFKSMLSEHAEFKAL 143

Query: 495 SLKDILTAADGTRKVV 542
           +LKD + A+DGTRK++
Sbjct: 144 TLKDSIKASDGTRKIL 159



 Score = 23.5 bits (49), Expect(3) = e-103
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 218 NKVLLKGMTYTELE 259
           +KVLLKGM Y EL+
Sbjct: 77  SKVLLKGMRYFELQ 90


>emb|CBI32146.3| unnamed protein product [Vitis vinifera]
          Length = 439

 Score =  290 bits (741), Expect(3) = e-103
 Identities = 140/170 (82%), Positives = 155/170 (91%)
 Frame = +1

Query: 544  QILFTLDDGLVIETVVIPCKKGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIIEQ 723
            +ILFTLDDGLVIETV+IPC +GR TVCVSSQVGCAMNCQFCYTGRMGL RHLTAAEI+EQ
Sbjct: 157  KILFTLDDGLVIETVIIPCDRGRNTVCVSSQVGCAMNCQFCYTGRMGLTRHLTAAEIVEQ 216

Query: 724  TVFVRRVLSGEVGSISNVVFMGMGEPLHNIDSVIKAANIMVDEQGLQFSPRKVTISTSGL 903
             V+ RR+ S EVGSI+NVVFMGMGEP HNI+SVIKAA+IMV +QGL FSPRKVT+STSGL
Sbjct: 217  AVYARRLFSSEVGSITNVVFMGMGEPFHNIESVIKAADIMVHDQGLHFSPRKVTVSTSGL 276

Query: 904  VPQLKRFLNESNCSLAVSLNATTNEVRNWIMPINRKYKLEMLLGTLREEL 1053
            VPQLK FL ESNC+LAVSLNATT+EVRNW+MPINRKY L +LL TLREEL
Sbjct: 277  VPQLKHFLRESNCALAVSLNATTDEVRNWVMPINRKYNLSLLLQTLREEL 326



 Score =  110 bits (275), Expect(3) = e-103
 Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
 Frame = +3

Query: 318 MFWFE-QKWVQSIGFRPGQAMMLWKQLYGHGIWAHSSDELEGLNKDFRKALSDLAEFKAL 494
           M +FE Q WVQS G+RPGQA+MLWK+LYG+ IWAH  DELEGLNKDF+  LS+ AEFKAL
Sbjct: 84  MRYFELQNWVQSHGYRPGQALMLWKRLYGNNIWAHCIDELEGLNKDFKSMLSEHAEFKAL 143

Query: 495 SLKDILTAADGTRKVV 542
           +LKD + A+DGTRK++
Sbjct: 144 TLKDSIKASDGTRKIL 159



 Score = 23.5 bits (49), Expect(3) = e-103
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 218 NKVLLKGMTYTELE 259
           +KVLLKGM Y EL+
Sbjct: 77  SKVLLKGMRYFELQ 90


>ref|XP_002886632.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
            lyrata] gi|297332473|gb|EFH62891.1| radical SAM
            domain-containing protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 458

 Score =  298 bits (763), Expect(3) = e-103
 Identities = 147/171 (85%), Positives = 159/171 (92%)
 Frame = +1

Query: 544  QILFTLDDGLVIETVVIPCKKGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIIEQ 723
            +ILFTLDDGLVIETVVIPC +GRTTVCVSSQVGCAMNCQFCYTGRMGLKR+LT AEI+EQ
Sbjct: 173  KILFTLDDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRNLTTAEIVEQ 232

Query: 724  TVFVRRVLSGEVGSISNVVFMGMGEPLHNIDSVIKAANIMVDEQGLQFSPRKVTISTSGL 903
             V+ RR+LS EVGSI+NVVFMGMGEP HNID+VIKAANIMVDE GL FSPRKVT+STSGL
Sbjct: 233  AVYARRLLSHEVGSITNVVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGL 292

Query: 904  VPQLKRFLNESNCSLAVSLNATTNEVRNWIMPINRKYKLEMLLGTLREELS 1056
            VPQLKRFL ESNC+LAVSLNATT+EVRNWIMPINRKYKL +LL TLRE LS
Sbjct: 293  VPQLKRFLRESNCALAVSLNATTDEVRNWIMPINRKYKLSLLLETLREGLS 343



 Score =  101 bits (251), Expect(3) = e-103
 Identities = 46/70 (65%), Positives = 59/70 (84%)
 Frame = +3

Query: 333 QKWVQSIGFRPGQAMMLWKQLYGHGIWAHSSDELEGLNKDFRKALSDLAEFKALSLKDIL 512
           Q+WVQS GFRPGQA+MLWK+LY   IWA++ DELEGLNKD ++ +S+ AEF ALS KDI 
Sbjct: 106 QEWVQSHGFRPGQALMLWKRLYKDNIWANNVDELEGLNKDLKRMISEHAEFGALSFKDIR 165

Query: 513 TAADGTRKVV 542
           +A+DGTRK++
Sbjct: 166 SASDGTRKIL 175



 Score = 23.5 bits (49), Expect(3) = e-103
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 212 NKNKVLLKGMTYTELE 259
           +  KV+LKGMTY  L+
Sbjct: 91  DNQKVILKGMTYAALQ 106


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