BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008933
         (413 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...    77   1e-12
ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]...    75   7e-12
ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854...    73   2e-11
ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]...    73   2e-11
ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like ...    73   2e-11

>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
           gi|223541691|gb|EEF43239.1| RNA polymerase-associated
           protein RTF1, putative [Ricinus communis]
          Length = 660

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 35/60 (58%), Positives = 46/60 (76%)
 Frame = -2

Query: 283 KGKNLKAVRLVEIDKKNKAENFTNASEKEPINKCFKAAENGYDPFSRRCKKSINQFVSNP 104
           +GK+ KA+RL E+++KN+AENF NASE +P+N   KA E GYDPFSRR  +S N +VS P
Sbjct: 470 QGKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKP 529


>ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]
           gi|222859693|gb|EEE97240.1| PAF1 complex component
           [Populus trichocarpa]
          Length = 664

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 36/60 (60%), Positives = 45/60 (75%)
 Frame = -2

Query: 283 KGKNLKAVRLVEIDKKNKAENFTNASEKEPINKCFKAAENGYDPFSRRCKKSINQFVSNP 104
           K K+ KA+RL E+++KN+ ENF NASE +PIN   KA E GYDPFSRR  +S N +VSNP
Sbjct: 473 KVKDAKALRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNP 532


>ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854406 [Vitis vinifera]
          Length = 493

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 39/94 (41%), Positives = 54/94 (57%)
 Frame = -2

Query: 283 KGKNLKAVRLVEIDKKNKAENFTNASEKEPINKCFKAAENGYDPFSRRCKKSINQFVSNP 104
           K K+ KA+RL E+++KN+AENF NASE + +N   KA E GYDPFSRR  +S N +VS P
Sbjct: 303 KEKDAKAIRLAEMNRKNRAENFKNASESKRVNTSLKAGEAGYDPFSRRWTRSRNYYVSKP 362

Query: 103 FTEASKNCHFAARSLESYEGNGAAGTTNVKQPIG 2
                        +  ++ G G+ GT      +G
Sbjct: 363 GGGDEAAAVANGEAPAAFVGAGSNGTGGKGAEVG 396


>ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]
           gi|222848649|gb|EEE86196.1| PAF1 complex component
           [Populus trichocarpa]
          Length = 662

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 34/60 (56%), Positives = 44/60 (73%)
 Frame = -2

Query: 283 KGKNLKAVRLVEIDKKNKAENFTNASEKEPINKCFKAAENGYDPFSRRCKKSINQFVSNP 104
           K K+ KA+RL E+++KN+ ENF NASE +P+N   KA E GYDPFSRR  +S N +VS P
Sbjct: 471 KVKDAKAIRLAEMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKP 530


>ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like protein [Medicago
           truncatula] gi|355500443|gb|AES81646.1| RNA
           polymerase-associated protein RTF1-like protein
           [Medicago truncatula]
          Length = 624

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 36/80 (45%), Positives = 52/80 (65%)
 Frame = -2

Query: 277 KNLKAVRLVEIDKKNKAENFTNASEKEPINKCFKAAENGYDPFSRRCKKSINQFVSNPFT 98
           K+ KA+RL E+++KN+ ENF NAS+ +P+NK  KA E GYDPFSRR  +S N + S P  
Sbjct: 444 KDAKALRLSEMNRKNRVENFKNASDLKPVNKALKAGEAGYDPFSRRWTRSRNYYNSKPAE 503

Query: 97  EASKNCHFAARSLESYEGNG 38
           EA+   + +  ++     NG
Sbjct: 504 EATAGNNTSGGAVGDGGSNG 523