BLASTX nr result
ID: Coptis24_contig00008923
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00008923
(1139 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002266510.1| PREDICTED: SKP1-interacting partner 15 [Viti... 499 e-139
ref|XP_002300927.1| predicted protein [Populus trichocarpa] gi|2... 466 e-129
ref|XP_002307489.1| f-box family protein [Populus trichocarpa] g... 461 e-127
ref|XP_002887662.1| F-box family protein [Arabidopsis lyrata sub... 457 e-126
ref|NP_565142.1| SKP1-interacting partner 15 [Arabidopsis thalia... 455 e-125
>ref|XP_002266510.1| PREDICTED: SKP1-interacting partner 15 [Vitis vinifera]
Length = 374
Score = 499 bits (1286), Expect = e-139
Identities = 248/375 (66%), Positives = 290/375 (77%), Gaps = 9/375 (2%)
Frame = -1
Query: 1124 MDTSPLHHLPQDTLNQIFSHLPLRQIIICRSVCRFFNHILTSQSFLTLISTRSPPLRLIA 945
MD SP++ LPQDTL+ IFS LPLRQIIICRSVC+FF LT+ +F+ LIST+ PPL LIA
Sbjct: 1 MDASPIYRLPQDTLHYIFSTLPLRQIIICRSVCKFFYQTLTAPAFMELISTQ-PPLNLIA 59
Query: 944 LRPXXXXXXXXXXSLI-------FLHVYDPNLNQWLKFSLNFLPCKIPIPVSSSLGLVYL 786
LRP LHV+DP+ NQW++F L+FLP + P PV+SSLGLVYL
Sbjct: 60 LRPPHHHHHHHHHHHNRDVSSHNALHVFDPSSNQWVRFPLSFLPFRSPTPVASSLGLVYL 119
Query: 785 WVDSPNS--NNKSLVVCNPLTRVYRVLPQLGSAWSKHGTVLVGSAHRVLVLTELAALFYS 612
W DS NS +NKSL+VCNPLTR ++VLPQLGSAWS+HG+VLVGS +RVLVLTELA L++S
Sbjct: 120 WADSLNSLESNKSLIVCNPLTRSFQVLPQLGSAWSRHGSVLVGSPNRVLVLTELATLYFS 179
Query: 611 GSGSWLKFSSNLPSKPRSPVLVHDSVFALCDVGSPWRSQWKLFNCTITELEKSRGWNRLE 432
GS WLKFSSNLPSKPRSP+LV DSV ALCDVGSPWRSQWKLF CT+ L+KS+ W RL+
Sbjct: 180 GSDQWLKFSSNLPSKPRSPILVSDSVLALCDVGSPWRSQWKLFACTLNHLQKSQPWTRLD 239
Query: 431 KHEWGDVFDILKRPRLVHGIGNRILMVGGLKSSFSLATSCSXXXXXXXXXXXLEWDEAGR 252
+HEWGDVFDIL+RPRLV G+GN+ILMVGGLKSSFSL CS LEWDE GR
Sbjct: 240 RHEWGDVFDILRRPRLVKGLGNQILMVGGLKSSFSLNAVCSTILILRLDLDSLEWDELGR 299
Query: 251 MPLDMFNYFHESGKFKVFGGGDRVCFSAKRVKGLAMWDCGLGAGKGEWKWIDGVPGNGDG 72
MP +MF F ES KFKVFG G+RVCFSAKRV LA+WD GKG+W+WI+GVPGNGDG
Sbjct: 300 MPPEMFRCFQESSKFKVFGAGNRVCFSAKRVGRLALWDYSTETGKGDWRWINGVPGNGDG 359
Query: 71 LCRGFVYEARLDGVP 27
L RGFV++ARL +P
Sbjct: 360 LFRGFVFQARLTALP 374
>ref|XP_002300927.1| predicted protein [Populus trichocarpa] gi|222842653|gb|EEE80200.1|
predicted protein [Populus trichocarpa]
Length = 376
Score = 466 bits (1199), Expect = e-129
Identities = 235/380 (61%), Positives = 289/380 (76%), Gaps = 14/380 (3%)
Frame = -1
Query: 1124 MDTSPLHHLPQDTLNQIFSHLPLRQIIICRSVCRFFNHILTSQSFLTLISTRSPPLRLIA 945
MD SP++ LPQDTL+QIFS LPLRQI+ICRSVC+FFN +LTS SF+ LIST+ PPLR +A
Sbjct: 1 MDDSPINRLPQDTLHQIFSSLPLRQIMICRSVCKFFNQMLTSPSFVDLISTQ-PPLRFLA 59
Query: 944 LRPXXXXXXXXXXS-------LIFLHVYDPNLNQWLKFSLNFLPCKIPIPVSSSLGLVYL 786
LRP + +LHV+DP+ NQWL+FSL+FLP + P PV+S+ GL+YL
Sbjct: 60 LRPPHHHHHLHHQRQNSHVSSVPYLHVFDPDQNQWLRFSLSFLPFRSPHPVASASGLIYL 119
Query: 785 WVDSPNS--NNKSLVVCNPLTRVYRVLPQLGSAWSKHGTVLVGSA-HRVLVLTELAALFY 615
W +SP S +N+SLVVCNPLTR ++VLPQLGSAWS+HG+VLV S HRV+VLTELAAL++
Sbjct: 120 WGESPTSIESNRSLVVCNPLTRQFQVLPQLGSAWSRHGSVLVDSVNHRVMVLTELAALYF 179
Query: 614 SGSG---SWLKFSSNLPSKPRSPVLVHDSVFALCDVGSPWRSQWKLFNCTITELEKS-RG 447
S + SWL FS+NLPSKPRSP+L+ DSVFALCDVGSPWRSQWKLF C +++L +
Sbjct: 180 SNTNKTNSWLTFSANLPSKPRSPILISDSVFALCDVGSPWRSQWKLFTCILSKLNNNYNN 239
Query: 446 WNRLEKHEWGDVFDILKRPRLVHGIGNRILMVGGLKSSFSLATSCSXXXXXXXXXXXLEW 267
W LE+ EWGD+FDI+KRPRLV G GN++LM+GGLKS+FSL TSCS LEW
Sbjct: 240 WVCLERQEWGDIFDIIKRPRLVRGKGNKLLMIGGLKSNFSLNTSCSTILILRLDLERLEW 299
Query: 266 DEAGRMPLDMFNYFHESGKFKVFGGGDRVCFSAKRVKGLAMWDCGLGAGKGEWKWIDGVP 87
+EAGRMP+DM+ F ES K KVFGGGDRVCFSAKR++ LA+WD G W+WI+GVP
Sbjct: 300 EEAGRMPVDMYRSFQESSKLKVFGGGDRVCFSAKRMRKLALWDDCDGV---VWRWIEGVP 356
Query: 86 GNGDGLCRGFVYEARLDGVP 27
GDGLCRGFV+EA +P
Sbjct: 357 VGGDGLCRGFVFEAGRTALP 376
>ref|XP_002307489.1| f-box family protein [Populus trichocarpa]
gi|222856938|gb|EEE94485.1| f-box family protein [Populus
trichocarpa]
Length = 374
Score = 461 bits (1187), Expect = e-127
Identities = 235/374 (62%), Positives = 285/374 (76%), Gaps = 12/374 (3%)
Frame = -1
Query: 1124 MDTSPLHHLPQDTLNQIFSHLPLRQIIICRSVCRFFNHILTSQSFLTLISTRSPPLRLIA 945
MD SP++ LPQDTLNQIFS LPLRQI+ICRSVC+FFN +LTS SF+ LIST++P LR +A
Sbjct: 1 MDASPINRLPQDTLNQIFSSLPLRQIMICRSVCKFFNQMLTSPSFMDLISTQTP-LRFLA 59
Query: 944 LRPXXXXXXXXXXS-----LIFLHVYDPNLNQWLKFSLNFLPCKIPIPVSSSLGLVYLWV 780
LRP + L +LHV+DP+ NQWL+FSL+FLP + P PV+S+ GL+YLW
Sbjct: 60 LRPPHHHHHHQRHNSHVSSLPYLHVFDPDQNQWLRFSLSFLPFRSPQPVASASGLLYLWG 119
Query: 779 DSPNS--NNKSLVVCNPLTRVYRVLPQLGSAWSKHGTVLVGSA-HRVLVLTELAALFYSG 609
+SPNS +N+SLVVCNPLTR ++VLPQLGSAWS+HG+VLV S HRV+VLTELAAL++S
Sbjct: 120 ESPNSLESNRSLVVCNPLTRQFQVLPQLGSAWSRHGSVLVDSVNHRVMVLTELAALYFSN 179
Query: 608 SG---SWLKFSSNLPSKPRSPVLVHDSVFALCDVGSPWRSQWKLFNCTITELEKS-RGWN 441
+ SWL FS+NLPSKPRSP+L+ DSVFALCDVGS WRSQWKLF CT+T L S W
Sbjct: 180 TNKTNSWLTFSANLPSKPRSPILISDSVFALCDVGSRWRSQWKLFTCTLTNLNNSYNNWV 239
Query: 440 RLEKHEWGDVFDILKRPRLVHGIGNRILMVGGLKSSFSLATSCSXXXXXXXXXXXLEWDE 261
L + EWGD+FDI+KRPRLV G GN++LM+G LKS+FSL SCS +EW+E
Sbjct: 240 CLGRLEWGDIFDIIKRPRLVRGKGNKLLMIGVLKSNFSLNPSCSTILILRLDLARMEWEE 299
Query: 260 AGRMPLDMFNYFHESGKFKVFGGGDRVCFSAKRVKGLAMWDCGLGAGKGEWKWIDGVPGN 81
AGRMP +M+ F ES KFK+FGGGDRVC SAKRV LA+WD G W+WI+GVPG
Sbjct: 300 AGRMPSEMYKSFQESSKFKIFGGGDRVCLSAKRVGKLALWDDCDGV---VWRWIEGVPGG 356
Query: 80 GDGLCRGFVYEARL 39
GDGLCRGFV+EA L
Sbjct: 357 GDGLCRGFVFEASL 370
>ref|XP_002887662.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
gi|297333503|gb|EFH63921.1| F-box family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 374
Score = 457 bits (1175), Expect = e-126
Identities = 231/380 (60%), Positives = 284/380 (74%), Gaps = 14/380 (3%)
Frame = -1
Query: 1124 MDTSPLHHLPQDTLNQIFSHLPLRQIIICRSVCRFFNHILTSQSFLTLISTRSPPLRLIA 945
M++SP++ LP D+L+QIFS LPLR I++CRSVC+FFN +LTSQ F+ +ISTR PPL L+A
Sbjct: 1 MESSPINRLPPDSLHQIFSSLPLRDIMVCRSVCKFFNQLLTSQCFIEIISTR-PPLNLLA 59
Query: 944 LRPXXXXXXXXXXS-------LIFLHVYDPNLNQWLKFSLNFLPCKIPIPVSSSLGLVYL 786
LRP ++HVYDP NQW +F+L+FLP + P PV+SS GL+YL
Sbjct: 60 LRPPHHHHSHRHSGNGHATNIRPYIHVYDPEQNQWFRFNLDFLPFRSPQPVASSSGLIYL 119
Query: 785 WVDSPN--SNNKSLVVCNPLTRVYRVLPQLGSAWSKHGTVLVGSAHRVLVLTELAALFYS 612
W DS + ++KSLV CNPLTR ++VLPQLGSAWS+HGTVLV S +RV+VLTELAAL+YS
Sbjct: 120 WGDSIDLAESSKSLVACNPLTRQFKVLPQLGSAWSRHGTVLVDSVNRVMVLTELAALYYS 179
Query: 611 GS---GSWLKFSSNLPSKPRSPVLVHDSVFALCDVGSPWRSQWKLFNCTITELEKSR-GW 444
G+ W KFSSNLPSKPRSPVL+ SVFALCDVGSPWRSQWKLF+C +T L + W
Sbjct: 180 GTVVANQWFKFSSNLPSKPRSPVLMSSSVFALCDVGSPWRSQWKLFSCKLTNLTITHTNW 239
Query: 443 NRLEKHEWGDVFDILKRPRLVHGIGN-RILMVGGLKSSFSLATSCSXXXXXXXXXXXLEW 267
LEKHEWGD+FDI+KRPRL+ G G+ ++LM+GGLKS+FSL +CS LEW
Sbjct: 240 VCLEKHEWGDIFDIIKRPRLLRGNGDSKLLMIGGLKSTFSLNPACSTILILRLDLESLEW 299
Query: 266 DEAGRMPLDMFNYFHESGKFKVFGGGDRVCFSAKRVKGLAMWDCGLGAGKGEWKWIDGVP 87
+EAGRMPL+M+ F ES KFKVFGGGDRV FSAKR+ LAMWDC G W+WIDGVP
Sbjct: 300 EEAGRMPLEMYRGFQESSKFKVFGGGDRVYFSAKRMGKLAMWDCWEG-----WRWIDGVP 354
Query: 86 GNGDGLCRGFVYEARLDGVP 27
G DGLCRGFV++A+L +P
Sbjct: 355 GYADGLCRGFVFDAKLTMMP 374
>ref|NP_565142.1| SKP1-interacting partner 15 [Arabidopsis thaliana]
gi|75098682|sp|O49279.1|SKI15_ARATH RecName:
Full=SKP1-interacting partner 15; AltName: Full=F-box
only protein 3 gi|2829924|gb|AAC00632.1| Unknown protein
[Arabidopsis thaliana] gi|17473630|gb|AAL38278.1| unknown
protein [Arabidopsis thaliana] gi|21553606|gb|AAM62699.1|
F-box protein AtFBX3 [Arabidopsis thaliana]
gi|30725584|gb|AAP37814.1| At1g76920 [Arabidopsis
thaliana] gi|332197782|gb|AEE35903.1| SKP1-interacting
partner 15 [Arabidopsis thaliana]
Length = 374
Score = 455 bits (1170), Expect = e-125
Identities = 231/380 (60%), Positives = 285/380 (75%), Gaps = 14/380 (3%)
Frame = -1
Query: 1124 MDTSPLHHLPQDTLNQIFSHLPLRQIIICRSVCRFFNHILTSQSFLTLISTRSPPLRLIA 945
M++SP++ LP D+L+QIFS LP+R I+ICRSVC+FFN +LTSQ F+ +ISTR PPL L+A
Sbjct: 1 MESSPVNCLPPDSLHQIFSSLPIRDIMICRSVCKFFNQLLTSQCFIEIISTR-PPLNLLA 59
Query: 944 LRPXXXXXXXXXXS-------LIFLHVYDPNLNQWLKFSLNFLPCKIPIPVSSSLGLVYL 786
LRP ++HVYDP NQW +F+L+FLP + P PV+SS GL+YL
Sbjct: 60 LRPPHHHHSHRHSGNGHATNIRPYIHVYDPEQNQWFRFNLDFLPFRSPQPVASSSGLIYL 119
Query: 785 WVDSPN--SNNKSLVVCNPLTRVYRVLPQLGSAWSKHGTVLVGSAHRVLVLTELAALFYS 612
W DS + ++KSLV CNPLTR ++VLPQLGSAWS+HGTVLV S +RV+VLTELAAL+YS
Sbjct: 120 WGDSIDLAESSKSLVACNPLTRQFKVLPQLGSAWSRHGTVLVDSVNRVMVLTELAALYYS 179
Query: 611 GS---GSWLKFSSNLPSKPRSPVLVHDSVFALCDVGSPWRSQWKLFNCTITELEKSR-GW 444
G+ WLKFSSNLPSKPRSPVL+ SVFALCDVGSPWRSQWKLF+C +T L + W
Sbjct: 180 GTVVANQWLKFSSNLPSKPRSPVLMSSSVFALCDVGSPWRSQWKLFSCKLTNLTITHTNW 239
Query: 443 NRLEKHEWGDVFDILKRPRLVHGIGN-RILMVGGLKSSFSLATSCSXXXXXXXXXXXLEW 267
LEKHEWGD+FDI+KRPRL+ G G+ ++LM+GGLKS+FSL +CS LEW
Sbjct: 240 VCLEKHEWGDIFDIIKRPRLLRGNGDSKLLMIGGLKSTFSLNPACSTILILRLDLESLEW 299
Query: 266 DEAGRMPLDMFNYFHESGKFKVFGGGDRVCFSAKRVKGLAMWDCGLGAGKGEWKWIDGVP 87
+EAGRMPL+M+ F ES KFKVFGGGDRV FSAKR+ LAMWDC G W+WI+GVP
Sbjct: 300 EEAGRMPLEMYRGFQESSKFKVFGGGDRVYFSAKRMGKLAMWDCWQG-----WRWIEGVP 354
Query: 86 GNGDGLCRGFVYEARLDGVP 27
G DGLCRGFV++A+L +P
Sbjct: 355 GYADGLCRGFVFDAKLTLMP 374