BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008909
         (415 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]              79   3e-13
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                 77   1e-12
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...    76   3e-12
gb|AAD03367.1| putative retroelement pol polyprotein [Arabidopsi...    72   6e-11
gb|AAF03460.1|AC009992_2 putative reverse transcriptase, 5' part...    71   1e-10

>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 36/74 (48%), Positives = 49/74 (66%)
 Frame = +2

Query: 11   YNRRVKLRQFQIGDLVLRRVTPITRKEKNGKLGLNWEGPYTVVDIGGAGTYRLRTQEGKL 190
            YN +VK R F +GD VLRRV    ++E  GKLG+NWEGPY + ++   G YRL+  E   
Sbjct: 1029 YNSKVKSRPFFVGDYVLRRVFDNKKEEGAGKLGINWEGPYIITEVVRNGVYRLKDLEDNP 1088

Query: 191  IEKPWNVRMLNKFH 232
            +++PWNV  L KF+
Sbjct: 1089 VKRPWNVINLKKFY 1102


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 33/74 (44%), Positives = 46/74 (62%)
 Frame = +2

Query: 11   YNRRVKLRQFQIGDLVLRRVTPITRKEKNGKLGLNWEGPYTVVDIGGAGTYRLRTQEGKL 190
            Y++ VK R    GDLVLR+V    R    GKLG NWEGPY +  + G G YRL   +G++
Sbjct: 1032 YDKGVKSRPLVPGDLVLRKVVGTARNPAWGKLGTNWEGPYRITSVAGIGAYRLEDLDGRV 1091

Query: 191  IEKPWNVRMLNKFH 232
            + +PWNV  L +++
Sbjct: 1092 VHRPWNVNNLRRYY 1105


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 36/75 (48%), Positives = 49/75 (65%)
 Frame = +2

Query: 11   YNRRVKLRQFQIGDLVLRRVTPITRKEKNGKLGLNWEGPYTVVDIGGAGTYRLRTQEGKL 190
            YN +VK R F +GD VL+RV    ++E  GKLG+NWEGPY V ++   G YRL+  E + 
Sbjct: 1212 YNSKVKSRPFFVGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVYRLKDLEDRP 1271

Query: 191  IEKPWNVRMLNKFHT 235
            +++PWNV   N  HT
Sbjct: 1272 VQRPWNV---NGHHT 1283


>gb|AAD03367.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1329

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 32/74 (43%), Positives = 45/74 (60%)
 Frame = +2

Query: 11   YNRRVKLRQFQIGDLVLRRVTPITRKEKNGKLGLNWEGPYTVVDIGGAGTYRLRTQEGKL 190
            YN  V+ R F++G LVLRRV     ++  GKLG++WEGPY +  +   G YRL   EGK 
Sbjct: 1255 YNSNVRNRSFEVGTLVLRRVQQNKAEKGAGKLGISWEGPYKITHVVRNGVYRLINMEGKT 1314

Query: 191  IEKPWNVRMLNKFH 232
            + + WN   L +F+
Sbjct: 1315 VRRAWNSMHLKRFY 1328


>gb|AAF03460.1|AC009992_2 putative reverse transcriptase, 5' partial [Arabidopsis thaliana]
          Length = 177

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 31/74 (41%), Positives = 48/74 (64%)
 Frame = +2

Query: 11  YNRRVKLRQFQIGDLVLRRVTPITRKEKNGKLGLNWEGPYTVVDIGGAGTYRLRTQEGKL 190
           YN ++  R F +GD VL+RV    ++E  GKLG+NWEGPY V ++   G + L+  E + 
Sbjct: 103 YNSKINSRPFFMGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVFGLKDLEDRP 162

Query: 191 IEKPWNVRMLNKFH 232
           +++PWN+  L KF+
Sbjct: 163 VKRPWNMVNLKKFY 176