BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008885
         (368 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI30132.3| unnamed protein product [Vitis vinifera]              195   4e-48
ref|XP_002266668.1| PREDICTED: DNA gyrase subunit B, chloroplast...   195   4e-48
sp|Q5YLB4.1|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chlor...   194   5e-48
ref|XP_002307976.1| predicted protein [Populus trichocarpa] gi|2...   191   7e-47
ref|XP_003554124.1| PREDICTED: DNA gyrase subunit B, chloroplast...   189   2e-46

>emb|CBI30132.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score =  195 bits (495), Expect = 4e-48
 Identities = 101/122 (82%), Positives = 109/122 (89%)
 Frame = -2

Query: 367 TLNNLGKKSKLIKEKDISLSGEHEREGLTCVISVKVPNPEFEGQTKTRLGNPEVRRVVNQ 188
           TLNNLGKKSK+IKEKDI+LSGEH REGLTCVISVKVPNPEFEGQTKTRLGNPEVR+VV+Q
Sbjct: 362 TLNNLGKKSKIIKEKDITLSGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQ 421

Query: 187 SVQEYLT*YLELHPDVLDLILSKSLNXXXXXXXXXXXRELVRQESVLKSSSLPGKLADCS 8
           +VQE+LT YLELHPDVLDLILSKSLN           RELVRQ+SVLKSSSLPGKLADCS
Sbjct: 422 TVQEFLTEYLELHPDVLDLILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCS 481

Query: 7   AT 2
           +T
Sbjct: 482 ST 483


>ref|XP_002266668.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like
           [Vitis vinifera]
          Length = 719

 Score =  195 bits (495), Expect = 4e-48
 Identities = 101/122 (82%), Positives = 109/122 (89%)
 Frame = -2

Query: 367 TLNNLGKKSKLIKEKDISLSGEHEREGLTCVISVKVPNPEFEGQTKTRLGNPEVRRVVNQ 188
           TLNNLGKKSK+IKEKDI+LSGEH REGLTCVISVKVPNPEFEGQTKTRLGNPEVR+VV+Q
Sbjct: 374 TLNNLGKKSKIIKEKDITLSGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQ 433

Query: 187 SVQEYLT*YLELHPDVLDLILSKSLNXXXXXXXXXXXRELVRQESVLKSSSLPGKLADCS 8
           +VQE+LT YLELHPDVLDLILSKSLN           RELVRQ+SVLKSSSLPGKLADCS
Sbjct: 434 TVQEFLTEYLELHPDVLDLILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCS 493

Query: 7   AT 2
           +T
Sbjct: 494 ST 495


>sp|Q5YLB4.1|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial;
           Flags: Precursor gi|38017095|gb|AAR07943.1| DNA gyrase B
           subunit [Nicotiana benthamiana]
          Length = 731

 Score =  194 bits (494), Expect = 5e-48
 Identities = 103/121 (85%), Positives = 106/121 (87%)
 Frame = -2

Query: 364 LNNLGKKSKLIKEKDISLSGEHEREGLTCVISVKVPNPEFEGQTKTRLGNPEVRRVVNQS 185
           LNNLGKKSK IKEKDISLSGEH REGLTCVISVKVPNPEFEGQTKTRLGNPEVR+VV+QS
Sbjct: 387 LNNLGKKSKTIKEKDISLSGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQS 446

Query: 184 VQEYLT*YLELHPDVLDLILSKSLNXXXXXXXXXXXRELVRQESVLKSSSLPGKLADCSA 5
           VQEYLT YLELHPDVLD ILSKSLN           RELVRQ+SVLKSSSLPGKLADCSA
Sbjct: 447 VQEYLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSA 506

Query: 4   T 2
           T
Sbjct: 507 T 507


>ref|XP_002307976.1| predicted protein [Populus trichocarpa] gi|222853952|gb|EEE91499.1|
           predicted protein [Populus trichocarpa]
          Length = 653

 Score =  191 bits (484), Expect = 7e-47
 Identities = 99/122 (81%), Positives = 106/122 (86%)
 Frame = -2

Query: 367 TLNNLGKKSKLIKEKDISLSGEHEREGLTCVISVKVPNPEFEGQTKTRLGNPEVRRVVNQ 188
           TLNN GKKSK+IK+KDISLSGEH REGLTC+ISVKVP+PEFEGQTKTRLGNPEVR+VV Q
Sbjct: 308 TLNNFGKKSKVIKDKDISLSGEHVREGLTCIISVKVPSPEFEGQTKTRLGNPEVRKVVEQ 367

Query: 187 SVQEYLT*YLELHPDVLDLILSKSLNXXXXXXXXXXXRELVRQESVLKSSSLPGKLADCS 8
           SVQEYLT YLELHPDVLD ILSKSLN           RELVRQ+SVLKSSSLPGKLADCS
Sbjct: 368 SVQEYLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCS 427

Query: 7   AT 2
           +T
Sbjct: 428 ST 429


>ref|XP_003554124.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like
           [Glycine max]
          Length = 724

 Score =  189 bits (481), Expect = 2e-46
 Identities = 96/122 (78%), Positives = 108/122 (88%)
 Frame = -2

Query: 367 TLNNLGKKSKLIKEKDISLSGEHEREGLTCVISVKVPNPEFEGQTKTRLGNPEVRRVVNQ 188
           TLN+LGKKSK+IKEKDI+LSGEH REGLTCV+SVKVPNPEFEGQTKTRLGNPEVR+VV+Q
Sbjct: 379 TLNSLGKKSKVIKEKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQ 438

Query: 187 SVQEYLT*YLELHPDVLDLILSKSLNXXXXXXXXXXXRELVRQESVLKSSSLPGKLADCS 8
           S+QEYLT YLELHPDVLD +LSK+LN           RELVRQ+SVL+SSSLPGKLADCS
Sbjct: 439 SIQEYLTEYLELHPDVLDSVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCS 498

Query: 7   AT 2
           +T
Sbjct: 499 ST 500