BLASTX nr result
ID: Coptis24_contig00008885
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00008885 (368 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI30132.3| unnamed protein product [Vitis vinifera] 195 4e-48 ref|XP_002266668.1| PREDICTED: DNA gyrase subunit B, chloroplast... 195 4e-48 sp|Q5YLB4.1|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chlor... 194 5e-48 ref|XP_002307976.1| predicted protein [Populus trichocarpa] gi|2... 191 7e-47 ref|XP_003554124.1| PREDICTED: DNA gyrase subunit B, chloroplast... 189 2e-46 >emb|CBI30132.3| unnamed protein product [Vitis vinifera] Length = 707 Score = 195 bits (495), Expect = 4e-48 Identities = 101/122 (82%), Positives = 109/122 (89%) Frame = -2 Query: 367 TLNNLGKKSKLIKEKDISLSGEHEREGLTCVISVKVPNPEFEGQTKTRLGNPEVRRVVNQ 188 TLNNLGKKSK+IKEKDI+LSGEH REGLTCVISVKVPNPEFEGQTKTRLGNPEVR+VV+Q Sbjct: 362 TLNNLGKKSKIIKEKDITLSGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQ 421 Query: 187 SVQEYLT*YLELHPDVLDLILSKSLNXXXXXXXXXXXRELVRQESVLKSSSLPGKLADCS 8 +VQE+LT YLELHPDVLDLILSKSLN RELVRQ+SVLKSSSLPGKLADCS Sbjct: 422 TVQEFLTEYLELHPDVLDLILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCS 481 Query: 7 AT 2 +T Sbjct: 482 ST 483 >ref|XP_002266668.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Vitis vinifera] Length = 719 Score = 195 bits (495), Expect = 4e-48 Identities = 101/122 (82%), Positives = 109/122 (89%) Frame = -2 Query: 367 TLNNLGKKSKLIKEKDISLSGEHEREGLTCVISVKVPNPEFEGQTKTRLGNPEVRRVVNQ 188 TLNNLGKKSK+IKEKDI+LSGEH REGLTCVISVKVPNPEFEGQTKTRLGNPEVR+VV+Q Sbjct: 374 TLNNLGKKSKIIKEKDITLSGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQ 433 Query: 187 SVQEYLT*YLELHPDVLDLILSKSLNXXXXXXXXXXXRELVRQESVLKSSSLPGKLADCS 8 +VQE+LT YLELHPDVLDLILSKSLN RELVRQ+SVLKSSSLPGKLADCS Sbjct: 434 TVQEFLTEYLELHPDVLDLILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCS 493 Query: 7 AT 2 +T Sbjct: 494 ST 495 >sp|Q5YLB4.1|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial; Flags: Precursor gi|38017095|gb|AAR07943.1| DNA gyrase B subunit [Nicotiana benthamiana] Length = 731 Score = 194 bits (494), Expect = 5e-48 Identities = 103/121 (85%), Positives = 106/121 (87%) Frame = -2 Query: 364 LNNLGKKSKLIKEKDISLSGEHEREGLTCVISVKVPNPEFEGQTKTRLGNPEVRRVVNQS 185 LNNLGKKSK IKEKDISLSGEH REGLTCVISVKVPNPEFEGQTKTRLGNPEVR+VV+QS Sbjct: 387 LNNLGKKSKTIKEKDISLSGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQS 446 Query: 184 VQEYLT*YLELHPDVLDLILSKSLNXXXXXXXXXXXRELVRQESVLKSSSLPGKLADCSA 5 VQEYLT YLELHPDVLD ILSKSLN RELVRQ+SVLKSSSLPGKLADCSA Sbjct: 447 VQEYLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSA 506 Query: 4 T 2 T Sbjct: 507 T 507 >ref|XP_002307976.1| predicted protein [Populus trichocarpa] gi|222853952|gb|EEE91499.1| predicted protein [Populus trichocarpa] Length = 653 Score = 191 bits (484), Expect = 7e-47 Identities = 99/122 (81%), Positives = 106/122 (86%) Frame = -2 Query: 367 TLNNLGKKSKLIKEKDISLSGEHEREGLTCVISVKVPNPEFEGQTKTRLGNPEVRRVVNQ 188 TLNN GKKSK+IK+KDISLSGEH REGLTC+ISVKVP+PEFEGQTKTRLGNPEVR+VV Q Sbjct: 308 TLNNFGKKSKVIKDKDISLSGEHVREGLTCIISVKVPSPEFEGQTKTRLGNPEVRKVVEQ 367 Query: 187 SVQEYLT*YLELHPDVLDLILSKSLNXXXXXXXXXXXRELVRQESVLKSSSLPGKLADCS 8 SVQEYLT YLELHPDVLD ILSKSLN RELVRQ+SVLKSSSLPGKLADCS Sbjct: 368 SVQEYLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCS 427 Query: 7 AT 2 +T Sbjct: 428 ST 429 >ref|XP_003554124.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Glycine max] Length = 724 Score = 189 bits (481), Expect = 2e-46 Identities = 96/122 (78%), Positives = 108/122 (88%) Frame = -2 Query: 367 TLNNLGKKSKLIKEKDISLSGEHEREGLTCVISVKVPNPEFEGQTKTRLGNPEVRRVVNQ 188 TLN+LGKKSK+IKEKDI+LSGEH REGLTCV+SVKVPNPEFEGQTKTRLGNPEVR+VV+Q Sbjct: 379 TLNSLGKKSKVIKEKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQ 438 Query: 187 SVQEYLT*YLELHPDVLDLILSKSLNXXXXXXXXXXXRELVRQESVLKSSSLPGKLADCS 8 S+QEYLT YLELHPDVLD +LSK+LN RELVRQ+SVL+SSSLPGKLADCS Sbjct: 439 SIQEYLTEYLELHPDVLDSVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCS 498 Query: 7 AT 2 +T Sbjct: 499 ST 500