BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008884
         (976 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containi...   201   2e-49
emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]   199   6e-49
ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containi...   198   2e-48
ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containi...   188   2e-45
emb|CAN76850.1| hypothetical protein VITISV_005998 [Vitis vinifera]   188   2e-45

>ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial-like [Vitis vinifera]
          Length = 382

 Score =  201 bits (511), Expect = 2e-49
 Identities = 99/198 (50%), Positives = 135/198 (68%)
 Frame = +1

Query: 1   AVLLLDEMEGKGLKPNLVTYNVLLHKLYEEGRFSDGEKIWARMEKKEIVPDIRSYNSKLR 180
           AV +LDEME K L+P+L+T+N LL+  Y  GRF DGEKIW RMEKK I+PDIRSYN+KL 
Sbjct: 184 AVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKIWGRMEKKNILPDIRSYNAKLV 243

Query: 181 GLVNEGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGKMDGAKRVYEDLVKSDLGL 360
           GLV+E    + + LVE+++TK +KPD YS+NALIKG+C DGK+D A   Y  + ++D   
Sbjct: 244 GLVSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGKVDEATNWYGKMRENDCLP 303

Query: 361 NRWTYDAYLPFLCEKEDYDLALELCKKSMDNNCKIDGKLVQAVVDGLVKNSKLEAAKRLV 540
           ++ T+   +P  CEK  +D A ELCK+  +  C +D  L+Q  VDGLVK  K+  AK+LV
Sbjct: 304 DKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVDEVLLQNAVDGLVKGGKVVEAKKLV 363

Query: 541 SLARLKSYAHSQVKMPSE 594
            L    SY    +K+P++
Sbjct: 364 QLGNSNSYRRYNLKIPTD 381



 Score = 67.8 bits (164), Expect = 4e-09
 Identities = 41/177 (23%), Positives = 89/177 (50%), Gaps = 1/177 (0%)
 Frame = +1

Query: 1   AVLLLDEMEGKGLKPNLVTYNVLLHKLYEEGRFSDGEKIWARMEKK-EIVPDIRSYNSKL 177
           A  + DEM  +  + +++++N LL       +F   E  ++ +  K  + PD+ SYN  +
Sbjct: 113 AFKVFDEMPDQKCERSVLSFNALLGACVNSKKFDKVEGFFSELPSKLSVEPDLVSYNIVI 172

Query: 178 RGLVNEGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGKMDGAKRVYEDLVKSDLG 357
            GL + G+   AV ++++++ K L+PD  ++N L+ G    G+    ++++  + K ++ 
Sbjct: 173 NGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKIWGRMEKKNIL 232

Query: 358 LNRWTYDAYLPFLCEKEDYDLALELCKKSMDNNCKIDGKLVQAVVDGLVKNSKLEAA 528
            +  +Y+A L  L  ++     + L ++      K DG    A++ G   + K++ A
Sbjct: 233 PDIRSYNAKLVGLVSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGKVDEA 289


>emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]
          Length = 383

 Score =  199 bits (507), Expect = 6e-49
 Identities = 99/199 (49%), Positives = 136/199 (68%), Gaps = 1/199 (0%)
 Frame = +1

Query: 1   AVLLLDEMEGKGLKPNLVTYNVLLHKLYEEGRFSDGEKIWARMEKKEIVPDIRSYNSKLR 180
           AV +LDEME K L+P+L+T+N LL++ Y  GRF DGEKIW RMEKK I+PDIRSYN+KL 
Sbjct: 184 AVGMLDEMEKKSLEPDLITFNTLLNRXYTSGRFLDGEKIWGRMEKKNILPDIRSYNAKLV 243

Query: 181 GLVN-EGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGKMDGAKRVYEDLVKSDLG 357
           GLV+ E    + + LVE+++TK +KPD YS+NALIKG+C DGK+D A   Y  + ++D  
Sbjct: 244 GLVSSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGKVDEATNWYGKMRENDCS 303

Query: 358 LNRWTYDAYLPFLCEKEDYDLALELCKKSMDNNCKIDGKLVQAVVDGLVKNSKLEAAKRL 537
            ++ T+   +P  CEK  +D A ELCK+  +  C +D  L+Q  VDGLVK  K+  AK+L
Sbjct: 304 PDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVDEVLLQNAVDGLVKGGKVVEAKKL 363

Query: 538 VSLARLKSYAHSQVKMPSE 594
           V L    SY    +K+P++
Sbjct: 364 VQLGNSNSYRRYNLKIPTD 382



 Score = 64.7 bits (156), Expect = 3e-08
 Identities = 42/178 (23%), Positives = 89/178 (50%), Gaps = 2/178 (1%)
 Frame = +1

Query: 1   AVLLLDEMEGKGLKPNLVTYNVLLHKLYEEGRFSDGEKIWARMEKK-EIVPDIRSYNSKL 177
           A  + DEM  +  + +++++N LL       +F   E  ++ +  K  + PD+ SYN  +
Sbjct: 113 AFKVFDEMPDQKCERSVLSFNXLLGACVXSKKFDKVEGFFSELPSKLSVEPDLVSYNIVI 172

Query: 178 RGLVNEGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGKMDGAKRVYEDLVKSDLG 357
           +GL + G+   AV ++++++ K L+PD  ++N L+      G+    ++++  + K ++ 
Sbjct: 173 KGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNRXYTSGRFLDGEKIWGRMEKKNIL 232

Query: 358 LNRWTYDAYLPFLCEKEDYDL-ALELCKKSMDNNCKIDGKLVQAVVDGLVKNSKLEAA 528
            +  +Y+A L  L   E   L  + L ++      K DG    A++ G   + K++ A
Sbjct: 233 PDIRSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGKVDEA 290


>ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial [Vitis vinifera]
          Length = 383

 Score =  198 bits (503), Expect = 2e-48
 Identities = 99/199 (49%), Positives = 135/199 (67%), Gaps = 1/199 (0%)
 Frame = +1

Query: 1   AVLLLDEMEGKGLKPNLVTYNVLLHKLYEEGRFSDGEKIWARMEKKEIVPDIRSYNSKLR 180
           AV +LDEME K L+P+L+T+N LL+  Y  GRF DGEKIW RMEKK I+PDIRSYN+KL 
Sbjct: 184 AVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKIWGRMEKKNILPDIRSYNAKLV 243

Query: 181 GLVN-EGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGKMDGAKRVYEDLVKSDLG 357
           GLV+ E    + + LVE+++TK +KPD YS+NALIKG+C DGK+D A   Y  + ++D  
Sbjct: 244 GLVSSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGKVDEATNWYGKMRENDCS 303

Query: 358 LNRWTYDAYLPFLCEKEDYDLALELCKKSMDNNCKIDGKLVQAVVDGLVKNSKLEAAKRL 537
            ++ T+   +P  CEK  +D A ELCK+  +  C +D  L+Q  VDGLVK  K+  AK+L
Sbjct: 304 PDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVDEVLLQNAVDGLVKGGKVVEAKKL 363

Query: 538 VSLARLKSYAHSQVKMPSE 594
           V L    SY    +K+P++
Sbjct: 364 VQLGNSNSYRRYNLKIPTD 382



 Score = 68.2 bits (165), Expect = 3e-09
 Identities = 43/178 (24%), Positives = 90/178 (50%), Gaps = 2/178 (1%)
 Frame = +1

Query: 1   AVLLLDEMEGKGLKPNLVTYNVLLHKLYEEGRFSDGEKIWARMEKK-EIVPDIRSYNSKL 177
           A  + DEM  +  + +++++N LL       +F   E  ++ +  K  + PD+ SYN  +
Sbjct: 113 AFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKVEGFFSELPSKLSVEPDLVSYNIVI 172

Query: 178 RGLVNEGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGKMDGAKRVYEDLVKSDLG 357
           +GL + G+   AV ++++++ K L+PD  ++N L+ G    G+    ++++  + K ++ 
Sbjct: 173 KGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKIWGRMEKKNIL 232

Query: 358 LNRWTYDAYLPFLCEKEDYDL-ALELCKKSMDNNCKIDGKLVQAVVDGLVKNSKLEAA 528
            +  +Y+A L  L   E   L  + L ++      K DG    A++ G   + K++ A
Sbjct: 233 PDIRSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGKVDEA 290


>ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13150-like [Vitis vinifera]
          Length = 379

 Score =  188 bits (477), Expect = 2e-45
 Identities = 88/198 (44%), Positives = 140/198 (70%)
 Frame = +1

Query: 1   AVLLLDEMEGKGLKPNLVTYNVLLHKLYEEGRFSDGEKIWARMEKKEIVPDIRSYNSKLR 180
           A+ +LDEME  GL+P+L+T+N LL+  Y+ G ++DGEKIW  M+K  + P++RSYN+KLR
Sbjct: 182 ALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNNVAPNVRSYNAKLR 241

Query: 181 GLVNEGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGKMDGAKRVYEDLVKSDLGL 360
           G+++E    +AV+L++++KT  +KPD ++ N+L+KG+C  G ++ AKR Y ++ +++L  
Sbjct: 242 GVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEEAKRWYSEIARNELPP 301

Query: 361 NRWTYDAYLPFLCEKEDYDLALELCKKSMDNNCKIDGKLVQAVVDGLVKNSKLEAAKRLV 540
            R TY   +PFL EK D+D+A ELCK+       I+  L+Q V++GLVK SK+E A  LV
Sbjct: 302 VRATYMTLIPFLVEKGDFDMATELCKEVCSRRWLIEPALLQQVLEGLVKESKIEEATELV 361

Query: 541 SLARLKSYAHSQVKMPSE 594
            LA+LK +    +++PS+
Sbjct: 362 ELAKLKKF-RITLELPSD 378



 Score = 61.6 bits (148), Expect = 3e-07
 Identities = 39/179 (21%), Positives = 86/179 (48%), Gaps = 1/179 (0%)
 Frame = +1

Query: 10  LLDEMEGKGLKPNLVTYNVLLHKLYEEGRFSDGEKIWARMEKK-EIVPDIRSYNSKLRGL 186
           L DE+     +  +V++N LL       +F   +  +  +     +VPD+ SYN  +   
Sbjct: 114 LFDELPKLNCERTVVSFNALLSVCVNSKKFDKIDGFFQELPGNLGVVPDVVSYNIIVNAF 173

Query: 187 VNEGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGKMDGAKRVYEDLVKSDLGLNR 366
              G+   A+ ++++++   L+PD  ++N L+  + ++G     +++++ + K+++  N 
Sbjct: 174 CEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNNVAPNV 233

Query: 367 WTYDAYLPFLCEKEDYDLALELCKKSMDNNCKIDGKLVQAVVDGLVKNSKLEAAKRLVS 543
            +Y+A L  +  +     A+EL  +   +  K D   + +++ G      LE AKR  S
Sbjct: 234 RSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEEAKRWYS 292


>emb|CAN76850.1| hypothetical protein VITISV_005998 [Vitis vinifera]
          Length = 340

 Score =  188 bits (477), Expect = 2e-45
 Identities = 88/198 (44%), Positives = 140/198 (70%)
 Frame = +1

Query: 1   AVLLLDEMEGKGLKPNLVTYNVLLHKLYEEGRFSDGEKIWARMEKKEIVPDIRSYNSKLR 180
           A+ +LDEME  GL+P+L+T+N LL+  Y+ G ++DGEKIW  M+K  + P++RSYN+KLR
Sbjct: 143 ALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNNVAPNVRSYNAKLR 202

Query: 181 GLVNEGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGKMDGAKRVYEDLVKSDLGL 360
           G+++E    +AV+L++++KT  +KPD ++ N+L+KG+C  G ++ AKR Y ++ +++L  
Sbjct: 203 GVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEEAKRWYSEIARNELPP 262

Query: 361 NRWTYDAYLPFLCEKEDYDLALELCKKSMDNNCKIDGKLVQAVVDGLVKNSKLEAAKRLV 540
            R TY   +PFL EK D+D+A ELCK+       I+  L+Q V++GLVK SK+E A  LV
Sbjct: 263 VRATYMTLIPFLVEKGDFDMATELCKEVCSRRWLIEPALLQQVLEGLVKESKIEEATELV 322

Query: 541 SLARLKSYAHSQVKMPSE 594
            LA+LK +    +++PS+
Sbjct: 323 ELAKLKKF-RITLELPSD 339



 Score = 60.1 bits (144), Expect = 8e-07
 Identities = 39/179 (21%), Positives = 85/179 (47%), Gaps = 1/179 (0%)
 Frame = +1

Query: 10  LLDEMEGKGLKPNLVTYNVLLHKLYEEGRFSDGEKIWARMEKK-EIVPDIRSYNSKLRGL 186
           L DE      +  +V++N LL       +F   +  +  +     +VPD+ SYN  +   
Sbjct: 75  LFDEXPKLNCERTVVSFNALLSVCVXSKKFDKIDGFFQELPGNLGVVPDVVSYNIIVNAF 134

Query: 187 VNEGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGKMDGAKRVYEDLVKSDLGLNR 366
              G+   A+ ++++++   L+PD  ++N L+  + ++G     +++++ + K+++  N 
Sbjct: 135 CEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNNVAPNV 194

Query: 367 WTYDAYLPFLCEKEDYDLALELCKKSMDNNCKIDGKLVQAVVDGLVKNSKLEAAKRLVS 543
            +Y+A L  +  +     A+EL  +   +  K D   + +++ G      LE AKR  S
Sbjct: 195 RSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEEAKRWYS 253