BLASTX nr result

ID: Coptis24_contig00008821 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008821
         (1262 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50966.1| T4.5 [Malus x robusta]                                184   3e-44
gb|ACN32036.1| unknown [Zea mays]                                     142   2e-31
gb|ACL54615.1| unknown [Zea mays]                                     140   7e-31
ref|XP_002329064.1| predicted protein [Populus trichocarpa] gi|2...   140   9e-31
emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]   139   1e-30

>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score =  184 bits (468), Expect = 3e-44
 Identities = 94/231 (40%), Positives = 147/231 (63%), Gaps = 4/231 (1%)
 Frame = +3

Query: 255 PPVNT--SYLFPNISHMVSIKLNKENYLMWKQLFLPIFITFDLTGFIDGTKLSPPKFLID 428
           PP+ T  +    N++ MV  KLN++NY+ W+ LF+P+   F L G ++G  L PP F+ D
Sbjct: 257 PPIMTLGTISITNVAGMVPTKLNRQNYITWRSLFIPVLKRFKLIGLVNGEDLCPPPFVRD 316

Query: 429 NNGNITTQLNPAYITWLKKDQMFFIWLNAMLSEDLLPYVVGLSSSRQLWLTLEKRLATIS 608
            +G  T   N ++ TW ++DQ+  IW+N+ LS+DLLP  +G+  SR LW +LE+R +  S
Sbjct: 317 PSG--TCVPNASFETWCERDQILMIWINSTLSKDLLPLTIGMEDSRSLWQSLERRFSGAS 374

Query: 609 TAHIIQLKSRLPSLVKGSSSMAEYLQKIKVIADSLAAVSAPMADSDLVYHTLRELPADYS 788
             H+  L+S++ ++ KG SSM ++L  IK I++ LAA   P+++SDLV + L  LP +Y 
Sbjct: 375 RTHVHSLRSKIQTIHKGDSSMTDFLNSIKEISNKLAAAGEPLSESDLVAYILSGLPDEYE 434

Query: 789 SFTTSIRTRSQNDPVSVDELHSLILSEELAIDER--NGASVNT*QMQAFAA 935
           SF  SI TR  N+ V+ DELH L+LS+E+++ +R    +S +     A+AA
Sbjct: 435 SFVDSIETR--NESVTADELHGLLLSKEISLQKRKTRASSSSNAPFHAYAA 483


>gb|ACN32036.1| unknown [Zea mays]
          Length = 376

 Score =  142 bits (357), Expect = 2e-31
 Identities = 80/211 (37%), Positives = 127/211 (60%), Gaps = 4/211 (1%)
 Frame = +3

Query: 252 VPPVNTSYLFPNISHMVSIKLNKENYLMWKQLFLPIFITFDLTGFIDGTKLSPPKFLI-- 425
           V  V +S   P  S MVS+KLN ENYL+W    LP   +  L+G IDG+  +P + +   
Sbjct: 10  VAAVFSSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVD 69

Query: 426 --DNNGNITTQLNPAYITWLKKDQMFFIWLNAMLSEDLLPYVVGLSSSRQLWLTLEKRLA 599
             + +G  T  +NP + +W  +DQ+    +N+ LSE++L  VV  +++R  W TLE+  A
Sbjct: 70  PAEGSGGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYA 129

Query: 600 TISTAHIIQLKSRLPSLVKGSSSMAEYLQKIKVIADSLAAVSAPMADSDLVYHTLRELPA 779
           + S A I+Q++ +L ++ KG  + AEY +K+K +AD+LAAV   + D + + + LR LPA
Sbjct: 130 SSSRARIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPA 189

Query: 780 DYSSFTTSIRTRSQNDPVSVDELHSLILSEE 872
           DY S  TSI TR   D  ++ ++++ +LS E
Sbjct: 190 DYDSLVTSITTRP--DTYTISDVYAHLLSFE 218


>gb|ACL54615.1| unknown [Zea mays]
          Length = 376

 Score =  140 bits (353), Expect = 7e-31
 Identities = 79/211 (37%), Positives = 126/211 (59%), Gaps = 4/211 (1%)
 Frame = +3

Query: 252 VPPVNTSYLFPNISHMVSIKLNKENYLMWKQLFLPIFITFDLTGFIDGTKLSPPKFLI-- 425
           V  V +S   P  S MVS+KLN ENYL+W    LP   +  L+G IDG+  +P + +   
Sbjct: 10  VAAVFSSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVD 69

Query: 426 --DNNGNITTQLNPAYITWLKKDQMFFIWLNAMLSEDLLPYVVGLSSSRQLWLTLEKRLA 599
             + +G  T  +NP + +W  +DQ+    +N+ LSE++L  VV  +++R  W TLE+  A
Sbjct: 70  PAEGSGGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYA 129

Query: 600 TISTAHIIQLKSRLPSLVKGSSSMAEYLQKIKVIADSLAAVSAPMADSDLVYHTLRELPA 779
           + S   I+Q++ +L ++ KG  + AEY +K+K +AD+LAAV   + D + + + LR LPA
Sbjct: 130 SSSRVRIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPA 189

Query: 780 DYSSFTTSIRTRSQNDPVSVDELHSLILSEE 872
           DY S  TSI TR   D  ++ ++++ +LS E
Sbjct: 190 DYDSLVTSITTRP--DTYTISDVYAHLLSFE 218


>ref|XP_002329064.1| predicted protein [Populus trichocarpa] gi|222839735|gb|EEE78058.1|
           predicted protein [Populus trichocarpa]
          Length = 270

 Score =  140 bits (352), Expect = 9e-31
 Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 3/224 (1%)
 Frame = +3

Query: 231 SSALSMAVPPVNTSYLFPNISHMVSIKLNKENYLMWKQLFLPIFITFDLTGFIDGTKLSP 410
           SS+ +   PP  T     N+   ++IKL+  NY +WK   +P F   DL G++DGT   P
Sbjct: 4   SSSSNSTTPP--TIPTLSNLPFTMTIKLHSSNYPVWKAQVVPYFCGHDLYGYLDGTISIP 61

Query: 411 PKFLI---DNNGNITTQLNPAYITWLKKDQMFFIWLNAMLSEDLLPYVVGLSSSRQLWLT 581
           PK L      +G   T  NP Y  WL++D +    +N+ L+ED+L  V+  ++SR++WL 
Sbjct: 62  PKELNISDSTSGTSQTIPNPLYHQWLRQDSLILATINSSLTEDVLTQVMSYTTSREVWLA 121

Query: 582 LEKRLATISTAHIIQLKSRLPSLVKGSSSMAEYLQKIKVIADSLAAVSAPMADSDLVYHT 761
           LE   +++S A +IQ++++L +  KG+ +  E+   +K +AD LA    P+ + D++ + 
Sbjct: 122 LENNFSSLSRAKVIQIRTQLANAKKGAMTANEFFLSVKRMADELALAGQPLPNDDIITYI 181

Query: 762 LRELPADYSSFTTSIRTRSQNDPVSVDELHSLILSEELAIDERN 893
           L  L  +Y S  ++I +R   DPVS++EL SL+L  E  I+  N
Sbjct: 182 LAGLGQEYDSLASTISSR--RDPVSLEELFSLLLICESRINHNN 223


>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score =  139 bits (351), Expect = 1e-30
 Identities = 79/221 (35%), Positives = 118/221 (53%), Gaps = 1/221 (0%)
 Frame = +3

Query: 276 LFPNISHMVSIKLN-KENYLMWKQLFLPIFITFDLTGFIDGTKLSPPKFLIDNNGNITTQ 452
           + P  + ++S+KL+   NYL WK  FL +    DL GFIDGT+  PPK     +      
Sbjct: 13  ILPPSTTIISVKLDGSHNYLAWKMQFLNLLRGHDLMGFIDGTEACPPKHTASGS------ 66

Query: 453 LNPAYITWLKKDQMFFIWLNAMLSEDLLPYVVGLSSSRQLWLTLEKRLATISTAHIIQLK 632
           LNPAY+ W KKD     W+ A LSE L+  + GL +S+Q+W  L+ R ++ S + I  LK
Sbjct: 67  LNPAYVVWQKKDVCLLGWILASLSEKLVSTIYGLETSKQVWTALQTRFSSQSRSRISHLK 126

Query: 633 SRLPSLVKGSSSMAEYLQKIKVIADSLAAVSAPMADSDLVYHTLRELPADYSSFTTSIRT 812
            +L +L +G+ S +EYL+  K +AD LAA   P+ D DL+   L  L + Y+ F TS   
Sbjct: 127 RQLQTLTQGTKSCSEYLESAKTLADQLAAAGKPVDDQDLISFLLGGLQSSYTPFVTSFNF 186

Query: 813 RSQNDPVSVDELHSLILSEELAIDERNGASVNT*QMQAFAA 935
            S+    + ++  + +L  E  +D  +          AFAA
Sbjct: 187 ASRETDFTFEDFQAELLGYENLLDVNHSVHNTDGPHFAFAA 227


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