BLASTX nr result

ID: Coptis24_contig00008817 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008817
         (648 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24709.3| unnamed protein product [Vitis vinifera]               92   8e-17
ref|XP_002275001.1| PREDICTED: formin-like protein 1-like [Vitis...    92   8e-17
ref|XP_002310397.1| predicted protein [Populus trichocarpa] gi|2...    61   2e-07
ref|XP_002885725.1| predicted protein [Arabidopsis lyrata subsp....    56   7e-06

>emb|CBI24709.3| unnamed protein product [Vitis vinifera]
          Length = 651

 Score = 92.0 bits (227), Expect = 8e-17
 Identities = 60/135 (44%), Positives = 75/135 (55%), Gaps = 6/135 (4%)
 Frame = -1

Query: 564 NISSLIVPHTSNRKSISPKXXXXXXXXXLCSVAFIFTVVLLIYYRRRRDNKTSRSDSHRL 385
           NISSLI P +S+RK +SPK         L +VA I    +L+Y+RR+   K  RSDS RL
Sbjct: 98  NISSLIFPQSSSRKGVSPKLVAIAVGVSLAAVALIAIAAVLLYHRRQPKRKDPRSDSLRL 157

Query: 384 YPSNTALXXXXXXXXXXXXXXXXXXXXXXXAEFLYLGTLVNSRGID----ANSVDAAANN 217
           YP+NTA+                       +EFLYLGTLVNSRG+D    ANS +A    
Sbjct: 158 YPANTAV-----SDGIQHHKQPRSSISGTSSEFLYLGTLVNSRGVDDDAAANSSNAGTKR 212

Query: 216 ISSS--PYQKLGSPE 178
            +S+  PYQKL SPE
Sbjct: 213 SASASPPYQKLSSPE 227


>ref|XP_002275001.1| PREDICTED: formin-like protein 1-like [Vitis vinifera]
          Length = 932

 Score = 92.0 bits (227), Expect = 8e-17
 Identities = 60/135 (44%), Positives = 75/135 (55%), Gaps = 6/135 (4%)
 Frame = -1

Query: 564 NISSLIVPHTSNRKSISPKXXXXXXXXXLCSVAFIFTVVLLIYYRRRRDNKTSRSDSHRL 385
           NISSLI P +S+RK +SPK         L +VA I    +L+Y+RR+   K  RSDS RL
Sbjct: 97  NISSLIFPQSSSRKGVSPKLVAIAVGVSLAAVALIAIAAVLLYHRRQPKRKDPRSDSLRL 156

Query: 384 YPSNTALXXXXXXXXXXXXXXXXXXXXXXXAEFLYLGTLVNSRGID----ANSVDAAANN 217
           YP+NTA+                       +EFLYLGTLVNSRG+D    ANS +A    
Sbjct: 157 YPANTAV-----SDGIQHHKQPRSSISGTSSEFLYLGTLVNSRGVDDDAAANSSNAGTKR 211

Query: 216 ISSS--PYQKLGSPE 178
            +S+  PYQKL SPE
Sbjct: 212 SASASPPYQKLSSPE 226


>ref|XP_002310397.1| predicted protein [Populus trichocarpa] gi|222853300|gb|EEE90847.1|
           predicted protein [Populus trichocarpa]
          Length = 948

 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 56/147 (38%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
 Frame = -1

Query: 564 NISSLIVPHTSNRKSISPKXXXXXXXXXLCSVAFIFTVVLL----IYYRRRRD----NKT 409
           NISSL++PH S+    SP            S+ F   + LL    IY RRR       K 
Sbjct: 99  NISSLLLPHRSS----SPHHNLIISISISLSLLFAALLALLSAFFIYSRRRTQPFSPQKG 154

Query: 408 SRSDSHRLYPSNTALXXXXXXXXXXXXXXXXXXXXXXXAEFLYLGTLVNSR-GIDANSVD 232
           SRS+S RLYP NT                         +EFLYLGTLVNS+ GID     
Sbjct: 155 SRSESLRLYPQNTI---PSDGSPKIPKLPHRPGVVSTSSEFLYLGTLVNSQAGIDDQDKP 211

Query: 231 AAANNI---------SSSPYQKLGSPE 178
            + +N          SSS YQKLGSPE
Sbjct: 212 TSTSNAVLKTGVSSSSSSHYQKLGSPE 238


>ref|XP_002885725.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297331565|gb|EFH61984.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1054

 Score = 55.8 bits (133), Expect = 7e-06
 Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 14/143 (9%)
 Frame = -1

Query: 564 NISSLIVPHTSNRKSISPKXXXXXXXXXLCSVAFIFTVVLLIYYRRRR---------DNK 412
           NISSLIVPH + +   + K         + S A +  ++ L+Y+RRRR         D+K
Sbjct: 90  NISSLIVPH-ATKSPPNSKKLLIVAISAVSSAALVALLIALLYWRRRRTNQDLNFSDDSK 148

Query: 411 TSRSD-SHRLY----PSNTALXXXXXXXXXXXXXXXXXXXXXXXAEFLYLGTLVNSRGID 247
           T  +D S R+Y    P+  A                        +EFLYLGT+VN RGI+
Sbjct: 149 TYTTDSSRRVYPPPPPATAAPTRRNAEARSKQRTTTRTSSTNNSSEFLYLGTMVNQRGIE 208

Query: 246 ANSVDAAANNISSSPYQKLGSPE 178
             S+   +NN SSS  +KL SP+
Sbjct: 209 EQSL---SNNGSSS--RKLESPD 226


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