BLASTX nr result
ID: Coptis24_contig00008746
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00008746
(780 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP80667.1|AF479048_1 ribosomal Pr 117, partial [Triticum aes... 286 3e-75
ref|XP_002301852.1| predicted protein [Populus trichocarpa] gi|2... 284 2e-74
gb|AAK25758.1|AF334838_1 ribosomal protein L17 [Castanea sativa]... 283 4e-74
ref|NP_001048495.1| Os02g0814700 [Oryza sativa Japonica Group] g... 283 4e-74
ref|NP_001235125.1| uncharacterized protein LOC100306699 [Glycin... 281 9e-74
>gb|AAP80667.1|AF479048_1 ribosomal Pr 117, partial [Triticum aestivum]
Length = 147
Score = 286 bits (733), Expect = 3e-75
Identities = 141/142 (99%), Positives = 141/142 (99%)
Frame = +2
Query: 17 PKMSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVG 196
P MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVG
Sbjct: 6 PSMSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVG 65
Query: 197 DMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIT 376
DMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Sbjct: 66 DMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIT 125
Query: 377 GPIGKECADLWPRIASAANAIV 442
GPIGKECADLWPRIASAANAIV
Sbjct: 126 GPIGKECADLWPRIASAANAIV 147
>ref|XP_002301852.1| predicted protein [Populus trichocarpa]
gi|224077606|ref|XP_002335793.1| predicted protein
[Populus trichocarpa] gi|224102227|ref|XP_002312599.1|
predicted protein [Populus trichocarpa]
gi|224110634|ref|XP_002315585.1| predicted protein
[Populus trichocarpa] gi|357137580|ref|XP_003570378.1|
PREDICTED: 60S ribosomal protein L23-like [Brachypodium
distachyon] gi|357146533|ref|XP_003574026.1| PREDICTED:
60S ribosomal protein L23-like [Brachypodium distachyon]
gi|315113254|pdb|3IZR|M Chain M, Localization Of The
Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em
Map Of Triticum Aestivum Translating 80s Ribosome
gi|57471720|gb|AAW50991.1| ribosomal protein L17
[Triticum aestivum] gi|76573329|gb|ABA46769.1| ribosomal
protein L17-like protein [Solanum tuberosum]
gi|118481489|gb|ABK92687.1| unknown [Populus
trichocarpa] gi|118482141|gb|ABK93001.1| unknown
[Populus trichocarpa] gi|118483249|gb|ABK93527.1|
unknown [Populus trichocarpa]
gi|118483257|gb|ABK93531.1| unknown [Populus
trichocarpa] gi|118484402|gb|ABK94078.1| unknown
[Populus trichocarpa] gi|118487170|gb|ABK95413.1|
unknown [Populus trichocarpa]
gi|222834818|gb|EEE73267.1| predicted protein [Populus
trichocarpa] gi|222843578|gb|EEE81125.1| predicted
protein [Populus trichocarpa]
gi|222852419|gb|EEE89966.1| predicted protein [Populus
trichocarpa] gi|222864625|gb|EEF01756.1| predicted
protein [Populus trichocarpa]
gi|326507922|dbj|BAJ86704.1| predicted protein [Hordeum
vulgare subsp. vulgare]
Length = 140
Score = 284 bits (726), Expect = 2e-74
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +2
Query: 23 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 202
MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 203 VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 382
VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
Query: 383 IGKECADLWPRIASAANAIV 442
IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140
>gb|AAK25758.1|AF334838_1 ribosomal protein L17 [Castanea sativa] gi|388492470|gb|AFK34301.1|
unknown [Lotus japonicus]
Length = 140
Score = 283 bits (723), Expect = 4e-74
Identities = 139/140 (99%), Positives = 140/140 (100%)
Frame = +2
Query: 23 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 202
MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 203 VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 382
VMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
Query: 383 IGKECADLWPRIASAANAIV 442
IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140
>ref|NP_001048495.1| Os02g0814700 [Oryza sativa Japonica Group]
gi|115450623|ref|NP_001048912.1| Os03g0139100 [Oryza
sativa Japonica Group] gi|115482426|ref|NP_001064806.1|
Os10g0466700 [Oryza sativa Japonica Group]
gi|212722212|ref|NP_001132424.1| uncharacterized protein
LOC100193874 [Zea mays] gi|212723532|ref|NP_001132737.1|
uncharacterized protein LOC100194224 [Zea mays]
gi|226494003|ref|NP_001148342.1| 60S ribosomal protein
L23 [Zea mays] gi|226532932|ref|NP_001149366.1| 60S
ribosomal protein L23 [Zea mays]
gi|259490208|ref|NP_001159003.1| 60S ribosomal protein
L23 [Zea mays] gi|225433247|ref|XP_002285443.1|
PREDICTED: 60S ribosomal protein L23-like [Vitis
vinifera] gi|225438001|ref|XP_002273253.1| PREDICTED:
60S ribosomal protein L23 [Vitis vinifera]
gi|255571210|ref|XP_002526555.1| 60S ribosomal protein
L23, putative [Ricinus communis]
gi|255574915|ref|XP_002528364.1| 60S ribosomal protein
L23, putative [Ricinus communis]
gi|13489168|gb|AAK27802.1|AC022457_5 60S ribosomal
protein L17 [Oryza sativa Japonica Group]
gi|31432581|gb|AAP54196.1| 60S ribosomal protein L23,
putative, expressed [Oryza sativa Japonica Group]
gi|47847875|dbj|BAD21668.1| 60S ribosomal protein L17
[Oryza sativa Japonica Group]
gi|108706089|gb|ABF93884.1| 60S ribosomal protein L23,
putative, expressed [Oryza sativa Japonica Group]
gi|113538026|dbj|BAF10409.1| Os02g0814700 [Oryza sativa
Japonica Group] gi|113547383|dbj|BAF10826.1|
Os03g0139100 [Oryza sativa Japonica Group]
gi|113639415|dbj|BAF26720.1| Os10g0466700 [Oryza sativa
Japonica Group] gi|125532288|gb|EAY78853.1| hypothetical
protein OsI_33956 [Oryza sativa Indica Group]
gi|125575086|gb|EAZ16370.1| hypothetical protein
OsJ_31833 [Oryza sativa Japonica Group]
gi|192910706|gb|ACF06461.1| 60S ribosomal protein L17
[Elaeis guineensis] gi|192910886|gb|ACF06551.1| 60S
ribosomal protein L17 [Elaeis guineensis]
gi|194694346|gb|ACF81257.1| unknown [Zea mays]
gi|195605548|gb|ACG24604.1| 60S ribosomal protein L23
[Zea mays] gi|195607254|gb|ACG25457.1| 60S ribosomal
protein L23 [Zea mays] gi|195618084|gb|ACG30872.1| 60S
ribosomal protein L23 [Zea mays]
gi|195618344|gb|ACG31002.1| 60S ribosomal protein L23
[Zea mays] gi|195622716|gb|ACG33188.1| 60S ribosomal
protein L23 [Zea mays] gi|195622784|gb|ACG33222.1| 60S
ribosomal protein L23 [Zea mays]
gi|195626480|gb|ACG35070.1| 60S ribosomal protein L23
[Zea mays] gi|195626676|gb|ACG35168.1| 60S ribosomal
protein L23 [Zea mays] gi|195636706|gb|ACG37821.1| 60S
ribosomal protein L23 [Zea mays]
gi|195641046|gb|ACG39991.1| 60S ribosomal protein L23
[Zea mays] gi|215767739|dbj|BAG99967.1| unnamed protein
product [Oryza sativa Japonica Group]
gi|218191803|gb|EEC74230.1| hypothetical protein
OsI_09417 [Oryza sativa Indica Group]
gi|222623902|gb|EEE58034.1| hypothetical protein
OsJ_08852 [Oryza sativa Japonica Group]
gi|223532232|gb|EEF34036.1| 60S ribosomal protein L23,
putative [Ricinus communis] gi|223534116|gb|EEF35833.1|
60S ribosomal protein L23, putative [Ricinus communis]
gi|223946861|gb|ACN27514.1| unknown [Zea mays]
gi|284520978|gb|ADB93064.1| 60S ribosomal protein L17
[Jatropha curcas] gi|296083720|emb|CBI23709.3| unnamed
protein product [Vitis vinifera]
gi|297744205|emb|CBI37175.3| unnamed protein product
[Vitis vinifera] gi|313586531|gb|ADR71276.1| 60S
ribosomal protein L23A [Hevea brasiliensis]
gi|313586533|gb|ADR71277.1| 60S ribosomal protein L23B
[Hevea brasiliensis] gi|413924091|gb|AFW64023.1| 60S
ribosomal protein L23 [Zea mays]
gi|413939450|gb|AFW74001.1| 60S ribosomal protein L23
[Zea mays] gi|413956980|gb|AFW89629.1| 60S ribosomal
protein L23 [Zea mays] gi|414864729|tpg|DAA43286.1| TPA:
60S ribosomal protein L23 [Zea mays]
Length = 140
Score = 283 bits (723), Expect = 4e-74
Identities = 139/140 (99%), Positives = 140/140 (100%)
Frame = +2
Query: 23 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 202
MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 203 VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 382
VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGV+MYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGP 120
Query: 383 IGKECADLWPRIASAANAIV 442
IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140
>ref|NP_001235125.1| uncharacterized protein LOC100306699 [Glycine max]
gi|356505056|ref|XP_003521308.1| PREDICTED: 60S
ribosomal protein L23-like [Glycine max]
gi|356548091|ref|XP_003542437.1| PREDICTED: 60S
ribosomal protein L23-like isoform 1 [Glycine max]
gi|356548093|ref|XP_003542438.1| PREDICTED: 60S
ribosomal protein L23-like isoform 2 [Glycine max]
gi|356572286|ref|XP_003554300.1| PREDICTED: 60S
ribosomal protein L23-like [Glycine max]
gi|255629315|gb|ACU15002.1| unknown [Glycine max]
Length = 140
Score = 281 bits (720), Expect = 9e-74
Identities = 138/140 (98%), Positives = 140/140 (100%)
Frame = +2
Query: 23 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 202
MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 203 VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 382
VMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGV+MYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGP 120
Query: 383 IGKECADLWPRIASAANAIV 442
IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140