BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008700
         (374 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX96173.1| retrotransposon protein, putative, Ty3-gypsy sub-...    64   1e-08
gb|AAX92790.1| retrotransposon protein, putative, Ty3-gypsy sub-...    64   1e-08
gb|AAM01143.1|AC108884_25 Putative retroelement [Oryza sativa Ja...    64   2e-08
gb|AAV24913.1| putative polyprotein [Oryza sativa Japonica Group]      64   2e-08
gb|ABB47119.1| retrotransposon protein, putative, Ty3-gypsy subc...    63   2e-08

>gb|AAX96173.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
           sativa Japonica Group] gi|77550610|gb|ABA93407.1|
           retrotransposon protein, putative, Ty3-gypsy subclass
           [Oryza sativa Japonica Group]
          Length = 689

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 31/79 (39%), Positives = 51/79 (64%)
 Frame = -1

Query: 374 VTGYVTKFNELSRFAPYLVDTDKKKNQKFIRGLESHLSGKLIPFDGDTFDRVLDLALRYE 195
           VT Y+ +FN L+R+AP  V TD ++ +KF+ GL+  L+ +LI  D + F++++D A+   
Sbjct: 215 VTEYLHEFNRLARYAPEDVRTDAERQEKFLSGLDDELTNQLISRDYEDFEKLVDKAITQS 274

Query: 194 EQNAALRESRGKRKFGEIP 138
            Q+A   +    +KFGEIP
Sbjct: 275 VQSALPAQPEQPKKFGEIP 293


>gb|AAX92790.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
           sativa Japonica Group]
          Length = 647

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 31/79 (39%), Positives = 51/79 (64%)
 Frame = -1

Query: 374 VTGYVTKFNELSRFAPYLVDTDKKKNQKFIRGLESHLSGKLIPFDGDTFDRVLDLALRYE 195
           VT Y+ +FN L+R+AP  V TD ++ +KF+ GL+  L+ +LI  D + F++++D A+   
Sbjct: 173 VTEYLHEFNRLARYAPEDVRTDAERQEKFLSGLDDELTNQLISRDYEDFEKLVDKAITQS 232

Query: 194 EQNAALRESRGKRKFGEIP 138
            Q+A   +    +KFGEIP
Sbjct: 233 VQSALPAQPEQPKKFGEIP 251


>gb|AAM01143.1|AC108884_25 Putative retroelement [Oryza sativa Japonica Group]
           gi|21263216|gb|AAM44893.1|AC122144_16 Putative
           retroelement [Oryza sativa Japonica Group]
           gi|31431896|gb|AAP53608.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1245

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 26/136 (19%)
 Frame = -1

Query: 374 VTGYVTKFNELSRFAPYLVDTDKKKNQKFIRGLESHLSGKLIPFDGDTFDRVLDLALRYE 195
           VT Y+ +FN L+R+AP  V TD +K +KF+ GL+  L+ +LI  D   F+R++D A+R E
Sbjct: 3   VTEYLHEFNRLARYAPEDVRTDAEKQEKFLAGLDDELTNQLISGDYANFERLVDKAIRQE 62

Query: 194 EQN---------AALRESRG---KRKFGEIPVVGPRPFESRQPNRFRPYDIPQ------- 72
           +Q          A  R  +G   + +F      GP     RQ   F P + PQ       
Sbjct: 63  DQRNKMDRKRKAAQFRAPQGSHQRPRFAPGQQGGPTTMIVRQYRPFNPSNFPQGASGSQN 122

Query: 71  -------RGPFQRPPS 45
                  RG   RPP+
Sbjct: 123 HHGGQPNRGAAPRPPT 138


>gb|AAV24913.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1850

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
 Frame = -1

Query: 374 VTGYVTKFNELSRFAPYLVDTDKKKNQKFIRGLESHLSGKLIPFDGDTFDRVLDLALRYE 195
           VT Y+ +FN L+R+AP  V TD +K +KF+ GL+  L+ +LI  D   F+R++D A+R E
Sbjct: 430 VTEYLHEFNRLARYAPEDVRTDAEKQEKFMAGLDDELTNQLISGDYADFERLVDKAIRQE 489

Query: 194 EQNAALRESRGKRKFGEIP------------VVGPRPFESRQPNRFRPYDIPQ------- 72
           +Q   +   R   +F   P              GP     RQ   F P + PQ       
Sbjct: 490 DQRNKMDRKRKAAQFRAPPGSHQRPRFAPGQQGGPTTMIVRQHRPFNPSNFPQGASGSQN 549

Query: 71  -------RGPFQRPP 48
                  RG   RPP
Sbjct: 550 HHGGQSNRGAAPRPP 564


>gb|ABB47119.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1522

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 26/135 (19%)
 Frame = -1

Query: 374 VTGYVTKFNELSRFAPYLVDTDKKKNQKFIRGLESHLSGKLIPFDGDTFDRVLDLALRYE 195
           VT Y+ +FN L+R+AP  V TD +K +KF+ GL+  L+ +LI  D   F+R++D A+R E
Sbjct: 235 VTQYLHEFNRLARYAPEDVRTDAEKQEKFMAGLDDELTNQLISGDYADFERLVDKAIRQE 294

Query: 194 EQN---------AALRESRG---KRKFGEIPVVGPRPFESRQPNRFRPYDIPQ------- 72
           +Q          A  R  +G   + +F      GP     RQ   F P + PQ       
Sbjct: 295 DQRNKMDRKRKAAQFRAPQGSHQRPRFAPGQQGGPTTMIVRQHRPFNPSNFPQGASGSQN 354

Query: 71  -------RGPFQRPP 48
                  RG   RPP
Sbjct: 355 HHGGQSNRGAASRPP 369