BLASTX nr result
ID: Coptis24_contig00008670
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00008670 (2245 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002263973.2| PREDICTED: RNA polymerase I-specific transcr... 398 e-108 emb|CBI37506.3| unnamed protein product [Vitis vinifera] 375 e-101 ref|XP_002524432.1| transcription initiation factor ia, putative... 370 e-100 ref|XP_002307198.1| predicted protein [Populus trichocarpa] gi|2... 360 7e-97 ref|XP_004155826.1| PREDICTED: RNA polymerase I-specific transcr... 353 8e-95 >ref|XP_002263973.2| PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Vitis vinifera] Length = 636 Score = 398 bits (1023), Expect = e-108 Identities = 204/349 (58%), Positives = 251/349 (71%), Gaps = 9/349 (2%) Frame = -2 Query: 1311 DVCAEKLDRLMVLMCEHIKSCADDGRLIEVFETLLTSFETAILPAHKSKFAQFVIFYACS 1132 ++ AEKLD LMVL EH++SC GRLIEVFETL+ SF+T +L A KSKFAQFV+FYAC+ Sbjct: 291 NLIAEKLDSLMVLTFEHLESCEAGGRLIEVFETLVLSFQTTVLNAFKSKFAQFVMFYACA 350 Query: 1131 LDPEVCGEKFAKKLYKSFVYGA-TPLIRMSAVAYLASYLARGRFLPSDLVVSTLESLADW 955 LDPE CG +FA+ L FV PL RMSAVAYLASYL+RG+FL + V + LE L W Sbjct: 351 LDPENCGVRFARVLADFFVCSTFPPLNRMSAVAYLASYLSRGKFLTASFVANILERLVVW 410 Query: 954 CSKYCKSQAIQEKSMNPELHKVFYSGCQAVMYVLCFRMRSIMDLPHLKSQLLCMPLEDIL 775 C +YCK I + +NP+ H+VFYSGCQA+MYVLCFRMRS+M++PHL+SQLL +PLE IL Sbjct: 411 CLEYCK---IHDGDINPKAHQVFYSGCQAIMYVLCFRMRSMMNVPHLRSQLLLLPLETIL 467 Query: 774 WNPLNPLKVCLPSIVNEFRLQAKAARLFAVAERLVFENLLESELSRTYGGMERLDMFFPF 595 +PL+PLKVCLPSIV EF QAKAARLF V+E +F +LLESELSR +GG+ERLDMFFPF Sbjct: 468 KHPLSPLKVCLPSIVEEFLRQAKAARLFTVSETFIFSDLLESELSRAFGGIERLDMFFPF 527 Query: 594 DPCLLKNCDRFIRPNFIYWSLANFTREHXXXXXXXXXXXXXXXXXXXXDVRESGMGMSYD 415 DPCLLK CDRFIRPNF+YWS+ T + + + M SYD Sbjct: 528 DPCLLKKCDRFIRPNFVYWSMIRTTYDDGEDSSDEEPAEDYEASHPDDVMNDDAMARSYD 587 Query: 414 GHEHELDAFENSIRQMSITPNISVMH--------NMPARLRPSTSPESL 292 H+ ELD F++S+ +MSITP S+ + MP+R+RPSTSPESL Sbjct: 588 SHDLELDEFDHSMNKMSITPKNSLYYRFGDELKVQMPSRIRPSTSPESL 636 Score = 189 bits (481), Expect = 2e-45 Identities = 116/241 (48%), Positives = 153/241 (63%), Gaps = 14/241 (5%) Frame = -1 Query: 2131 MGMELNSNYSNITEDNKMXXXXXXXEYTDSEIVLFVRDALKSVTNTDDENYTDHYSQLIG 1952 MG+EL ++ + E ++ ++DSE+V VR AL+SV D +D Y QLIG Sbjct: 1 MGVELATDRAGFHEMEEVN-------FSDSELVYHVRHALQSVPLGD----SDSYDQLIG 49 Query: 1951 VLNSTKRYNPDQVASLVTSLRALSRVTSYIDSYHHGSLLDSIFDIKMWDYGTDVMDALME 1772 VL+ +R PD+VA LVTSL+ALS S ID HH SLL SIF + +W+YG DVMDAL+E Sbjct: 50 VLHHKERLAPDEVALLVTSLKALSGAVSCIDMVHHKSLLSSIFGMSLWNYGPDVMDALLE 109 Query: 1771 LIVSLSA-SGYVVQC-LHMLVKSFTPPKSFLPLLSQPRGIAKKKEVLDRVHSALKEIADL 1598 LI+SL+A SG + C L MLV +F PP S L L QPRG+A+K +VL RVHS LK+IADL Sbjct: 110 LILSLAASSGNYLDCSLDMLVSNFMPPYSLLDFLKQPRGLARKDQVLSRVHSTLKDIADL 169 Query: 1597 VPLAPTTLQFRVLELMPHITNEN------------EVYVENMLRLESGVFGTYLGKEILR 1454 VPLAP+ L V++ MP++ + ++YVENMLRLE G +G +L Sbjct: 170 VPLAPSRLVPIVIQRMPNVFTKEPVSSICSTLFRIQIYVENMLRLEGGAIRELVGNMMLV 229 Query: 1453 A 1451 A Sbjct: 230 A 230 >emb|CBI37506.3| unnamed protein product [Vitis vinifera] Length = 607 Score = 375 bits (963), Expect = e-101 Identities = 199/349 (57%), Positives = 244/349 (69%), Gaps = 9/349 (2%) Frame = -2 Query: 1311 DVCAEKLDRLMVLMCEHIKSCADDGRLIEVFETLLTSFETAILPAHKSKFAQFVIFYACS 1132 ++ AEKLD LMVL EH++SC GRLIEVFETL+ SF+T +L A KSKFAQFV+FYAC+ Sbjct: 282 NLIAEKLDSLMVLTFEHLESCEAGGRLIEVFETLVLSFQTTVLNAFKSKFAQFVMFYACA 341 Query: 1131 LDPEVCGEKFAKKLYKSFVYGA-TPLIRMSAVAYLASYLARGRFLPSDLVVSTLESLADW 955 LDPE CG +FA+ L FV PL RMSAVAYLASYL+RG+FL + V + LE L W Sbjct: 342 LDPENCGVRFARVLADFFVCSTFPPLNRMSAVAYLASYLSRGKFLTASFVANILERLVVW 401 Query: 954 CSKYCKSQAIQEKSMNPELHKVFYSGCQAVMYVLCFRMRSIMDLPHLKSQLLCMPLEDIL 775 C +YCK I + +NP+ H+VFYSGCQA+MYVLCFRMRS+M++PHL+SQLL +PLE IL Sbjct: 402 CLEYCK---IHDGDINPKAHQVFYSGCQAIMYVLCFRMRSMMNVPHLRSQLLLLPLETIL 458 Query: 774 WNPLNPLKVCLPSIVNEFRLQAKAARLFAVAERLVFENLLESELSRTYGGMERLDMFFPF 595 +PL+PLKVCLPSIV EF QAKAARLF V+E +F +LLESELSR +GG+ERLDMFFPF Sbjct: 459 KHPLSPLKVCLPSIVEEFLRQAKAARLFTVSETFIFSDLLESELSRAFGGIERLDMFFPF 518 Query: 594 DPCLLKNCDRFIRPNFIYWSLANFTREHXXXXXXXXXXXXXXXXXXXXDVRESGMGMSYD 415 DPCLLK CDRFIRPNF+YWS+ T + S + D Sbjct: 519 DPCLLKKCDRFIRPNFVYWSMIRTTYDDGED--------------------SSDEEPAED 558 Query: 414 GHEHELDAFENSIRQMSITPNISVMH--------NMPARLRPSTSPESL 292 D F++S+ +MSITP S+ + MP+R+RPSTSPESL Sbjct: 559 YEASHPDDFDHSMNKMSITPKNSLYYRFGDELKVQMPSRIRPSTSPESL 607 Score = 192 bits (487), Expect = 4e-46 Identities = 116/232 (50%), Positives = 152/232 (65%), Gaps = 5/232 (2%) Frame = -1 Query: 2131 MGMELNSNYSNITEDNKMXXXXXXXEYTDSEIVLFVRDALKSVTNTDDENYTDHYSQLIG 1952 MG+EL ++ + E ++ ++DSE+V VR AL+SV D +D Y QLIG Sbjct: 1 MGVELATDRAGFHEMEEVN-------FSDSELVYHVRHALQSVPLGD----SDSYDQLIG 49 Query: 1951 VLNSTKRYNPDQVASLVTSLRALSRVTSYIDSYHHGSLLDSIFDIKMWDYGTDVMDALME 1772 VL+ +R PD+VA LVTSL+ALS S ID HH SLL SIF + +W+YG DVMDAL+E Sbjct: 50 VLHHKERLAPDEVALLVTSLKALSGAVSCIDMVHHKSLLSSIFGMSLWNYGPDVMDALLE 109 Query: 1771 LIVSLSA-SGYVVQC-LHMLVKSFTPPKSFLPLLSQPRGIAKKKEVLDRVHSALKEIADL 1598 LI+SL+A SG + C L MLV +F PP S L L QPRG+A+K +VL RVHS LK+IADL Sbjct: 110 LILSLAASSGNYLDCSLDMLVSNFMPPYSLLDFLKQPRGLARKDQVLSRVHSTLKDIADL 169 Query: 1597 VPLAPTTLQFRVLELMPHITNENE---VYVENMLRLESGVFGTYLGKEILRA 1451 VPLAP+ L V++ MP++ + +YVENMLRLE G +G +L A Sbjct: 170 VPLAPSRLVPIVIQRMPNVFTKEPLIMIYVENMLRLEGGAIRELVGNMMLVA 221 >ref|XP_002524432.1| transcription initiation factor ia, putative [Ricinus communis] gi|223536316|gb|EEF37967.1| transcription initiation factor ia, putative [Ricinus communis] Length = 640 Score = 370 bits (950), Expect = e-100 Identities = 193/350 (55%), Positives = 238/350 (68%), Gaps = 7/350 (2%) Frame = -2 Query: 1320 LQPDVCAEKLDRLMVLMCEHIKSCADDGRLIEVFETLLTSFETAILPAHKSKFAQFVIFY 1141 L +V A+ LD LMV + EH++ CA++ RL +VFETLL SF IL +KSKFAQFV+FY Sbjct: 294 LGENVAADLLDSLMVRIFEHLELCANNKRLNDVFETLLDSFMLTILNTYKSKFAQFVMFY 353 Query: 1140 ACSLDPEVCGEKFAKKLYKSFVYGATPLIRMSAVAYLASYLARGRFLPSDLVVSTLESLA 961 AC+LDPE CG +FA++L F YG PL RMSAVAYLASYLAR +FLP V STL+ L Sbjct: 354 ACALDPENCGVEFAERLRDRFTYGENPLTRMSAVAYLASYLARAKFLPIAFVASTLKRLV 413 Query: 960 DWCSKYCKSQAIQEKSMNPELHKVFYSGCQAVMYVLCFRMRSIMDLPHLKSQLLCMPLED 781 DWCS+YC++Q + MNP+ H+VFYSGCQA++YVLCFRM S+MD+P LKSQLL MPLE Sbjct: 414 DWCSEYCRNQ---DGDMNPKAHRVFYSGCQAILYVLCFRMSSMMDIPWLKSQLLHMPLEQ 470 Query: 780 ILWNPLNPLKVCLPSIVNEFRLQAKAARLFAVAERLVFENLLESELSRTYGGMERLDMFF 601 I+ + L PLKVCLPSIV EF QAKAA LF ++ FE++LESE S+ +GG+ERLDMFF Sbjct: 471 IMKHKLGPLKVCLPSIVEEFLKQAKAAHLFTTSQTSSFEDVLESEFSKDFGGLERLDMFF 530 Query: 600 PFDPCLLKNCDR-FIRPNFIYWSLANFTREHXXXXXXXXXXXXXXXXXXXXDVRESGMGM 424 PFDPCLL+ CDR FIRPNF+YW T E GM Sbjct: 531 PFDPCLLRTCDRSFIRPNFVYWKDVRTTYGSDEEDSSDEDIAEDFTDINGGSYMEEGMAT 590 Query: 423 SYDGHEHELDAFENSIRQMSITP------NISVMHNMPARLRPSTSPESL 292 S DG +LD F+ ++ +MSITP MP+++RPSTSPESL Sbjct: 591 SLDGQHLDLDEFDYAMNKMSITPKNRFGIRFGERMQMPSKIRPSTSPESL 640 Score = 190 bits (482), Expect = 2e-45 Identities = 109/244 (44%), Positives = 149/244 (61%), Gaps = 17/244 (6%) Frame = -1 Query: 2131 MGMELNSNYSNITEDNKMXXXXXXXEYTDSEIVLFVRDALKSVTNTDDENYTDHYSQLIG 1952 MG+EL+S Y ED + YTDS++V VRDAL SV D T+ Y QL+G Sbjct: 1 MGVELDSQYKKEIEDME----DDGVNYTDSDLVYHVRDALHSVQYGD----TNSYDQLVG 52 Query: 1951 VLNSTKRYNPDQVASLVTSLRALSRVTSYIDSYHHGSLLDSIFDIKMWDYGTDVMDALME 1772 V++ ++R PD VA L+TSL+ALS SYID HH LL SIF + +W+YG DVM+AL+E Sbjct: 53 VMHHSQRLTPDDVALLLTSLKALSGAVSYIDECHHDRLLQSIFGMSIWNYGPDVMEALLE 112 Query: 1771 LIVSLSASG--YVVQCLHMLVKSFTPPKSFLPLLSQPRGIAKKKEVLDRVHSALKEIADL 1598 LI++L+AS Y+ CL MLV +F PP + +L PRG AKK++VL R+H+AL++IA L Sbjct: 113 LIIALAASNGKYIDPCLKMLVTNFVPPMYLIDILKLPRGQAKKEQVLSRLHTALEDIAHL 172 Query: 1597 VPLAPTTLQFRVLELMPHITN---------------ENEVYVENMLRLESGVFGTYLGKE 1463 +P+A + L V+ + I E+YVENMLRLESG ++G Sbjct: 173 IPMAASRLSTEVVSEIQRIPTTFKKDQYHEKDRVKYRTEIYVENMLRLESGAIREFVGSR 232 Query: 1462 ILRA 1451 +L A Sbjct: 233 MLMA 236 >ref|XP_002307198.1| predicted protein [Populus trichocarpa] gi|222856647|gb|EEE94194.1| predicted protein [Populus trichocarpa] Length = 635 Score = 360 bits (925), Expect = 7e-97 Identities = 191/350 (54%), Positives = 242/350 (69%), Gaps = 7/350 (2%) Frame = -2 Query: 1320 LQPDVCAEKLDRLMVLMCEHIKSCADDGRLIEVFETLLTSFETAILPAHKSKFAQFVIFY 1141 L +V A+ LD LM+ EH+++CAD RL EVFETLL+SF IL +KSKF+QF IFY Sbjct: 290 LGKNVTADLLDSLMIQFLEHLEACADKKRLSEVFETLLSSFMATILNTYKSKFSQFTIFY 349 Query: 1140 ACSLDPEVCGEKFAKKLYKSFVYGATPLI-RMSAVAYLASYLARGRFLPSDLVVSTLESL 964 AC+LDPE CG KFA+ L F+ P + RMSAVAYL+SYLARG+FL + V++ L+ L Sbjct: 350 ACALDPENCGVKFAQTLVDLFISTCNPPVTRMSAVAYLSSYLARGKFLSAAFVMNMLKRL 409 Query: 963 ADWCSKYCKSQAIQEKSMNPELHKVFYSGCQAVMYVLCFRMRSIMDLPHLKSQLLCMPLE 784 DWC +YC+ Q + MNP+ H+VFYS CQ +MYVLCF M+SIM++P LKSQLL MP+E Sbjct: 410 VDWCLRYCEEQ---DSDMNPKAHQVFYSACQGIMYVLCFHMKSIMNVPTLKSQLLLMPIE 466 Query: 783 DILWNPLNPLKVCLPSIVNEFRLQAKAARLFAVAERLVFENLLESELSRTYGGMERLDMF 604 IL + L PL+VCLPSIVNEF QAKAA LF +++ +FE+LLES+LSR +GG+ERLDMF Sbjct: 467 PILKHKLGPLEVCLPSIVNEFLKQAKAAHLFTISKAFIFEDLLESDLSRDFGGLERLDMF 526 Query: 603 FPFDPCLLKNCDR-FIRPNFIYWSLANFTREHXXXXXXXXXXXXXXXXXXXXDVRESGMG 427 FPFDPCLLK CDR FIRPNFIYW+ T + + E GM Sbjct: 527 FPFDPCLLKKCDRGFIRPNFIYWNHVKTTYDDDEEDSSDEDIADDFGVLNEENFMEEGMA 586 Query: 426 MSYDGHEHELDAFENSIRQMSITP-NISVMH----NMPARLRPSTSPESL 292 S+D + +LD F+ + +MSITP N S H MP+++RPSTSPESL Sbjct: 587 RSFD-QDIDLDEFDYVMNKMSITPKNTSGFHFGGERMPSKIRPSTSPESL 635 Score = 158 bits (400), Expect = 5e-36 Identities = 100/235 (42%), Positives = 131/235 (55%), Gaps = 10/235 (4%) Frame = -1 Query: 2131 MGMELNSNYSNITEDNKMXXXXXXXEYTDSEIVLFVRDALKSVTNTDDENYTDHYSQLIG 1952 MG+EL Y+ TD ++V VRDAL SV D +Y QL+G Sbjct: 1 MGVELTHQYTEYRAMEDQEEVEEGVSITDWDLVYHVRDALLSVKTGDRSSY----HQLVG 56 Query: 1951 VLNSTKRYNPDQVASLVTSLRALSRVTSYIDSYHHGSLLDSIFDIKMWDYGTDVMDALME 1772 VL+ R PD+VA L+TSL+ALS SYI+ H SLL SIF + MW+ DVMDAL+E Sbjct: 57 VLHHRDRSAPDKVALLLTSLKALSGAVSYINDVDHVSLLQSIFGMSMWNCAPDVMDALLE 116 Query: 1771 LIVSLSASG--YVVQCLHMLVKSFTPPKSFLPLLSQPRGIAKKKEVLDRVHSALKEIADL 1598 LI+ L+AS YV CL MLV +F PP +L PRG AKK +VL RVH+ L+ I DL Sbjct: 117 LIICLAASNGKYVDLCLDMLVNNFMPPME-SDMLRHPRGQAKKDQVLPRVHTGLEVIVDL 175 Query: 1597 VPLAPTTLQFRVLELMPHITNEN--------EVYVENMLRLESGVFGTYLGKEIL 1457 VPLA L V++ P ++ +Y++NML LE G ++G +L Sbjct: 176 VPLAALKLSTNVVQKRPMFFRKDFNMDRLKCRIYLKNMLMLEGGAIREFVGHSML 230 >ref|XP_004155826.1| PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Cucumis sativus] Length = 625 Score = 353 bits (907), Expect = 8e-95 Identities = 184/349 (52%), Positives = 238/349 (68%), Gaps = 11/349 (3%) Frame = -2 Query: 1311 DVCAEKLDRLMVLMCEHIKSCADDGRLIEVFETLLTSFETAILPAHKSKFAQFVIFYACS 1132 +V AE LD L+VL EH++SC DGRL EVF+ LL SF+ +L A+KSKFAQF++FYACS Sbjct: 281 NVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACS 340 Query: 1131 LDPEVCGEKFAKKLYKSFVY-GATPLIRMSAVAYLASYLARGRFLPSDLVVSTLESLADW 955 LDPEVCG +FA L FV PLIRMSAV+YLAS+L+RG+FL + LV + L+ L DW Sbjct: 341 LDPEVCGARFAISLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDW 400 Query: 954 CSKYCKSQAIQEKSMNPELHKVFYSGCQAVMYVLCFRMRSIMDLPHLKSQLLCMPLEDIL 775 C +Y K+ + NP+ HKVFYSGCQA+MYVLCFRMRSI+++P LKSQLL MP+ +L Sbjct: 401 CLEYGKTLNVDP---NPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLL 457 Query: 774 WNPLNPLKVCLPSIVNEFRLQAKAARLFAVAERLVFENLLESELSRTYGGMERLDMFFPF 595 + L+PLKVCLPSIV EF QAK A LF +E +F LLES+ SR++GG+ERLDMFFPF Sbjct: 458 THRLSPLKVCLPSIVEEFLRQAKVANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPF 517 Query: 594 DPCLLKNCDRFIRPNFIYWSLANFTREHXXXXXXXXXXXXXXXXXXXXDVRES-----GM 430 DPCLLK CDR++RP+F+YWS+ T + + E+ M Sbjct: 518 DPCLLKKCDRYLRPHFVYWSMVRPTYDEEEEEEDDGGSSDEDAEIFPDRIDENLMDDEAM 577 Query: 429 GMSYDGHEHELDAFENSIRQMSITPNISVMH-----NMPARLRPSTSPE 298 +SYD + +LD + + +MSITP S+ + MP+R+RPS SPE Sbjct: 578 AISYDDQDFDLD---SGLNKMSITPRNSLQYRCDFVQMPSRIRPSMSPE 623 Score = 188 bits (478), Expect = 5e-45 Identities = 110/234 (47%), Positives = 154/234 (65%), Gaps = 7/234 (2%) Frame = -1 Query: 2131 MGMELNSNYSNI--TEDNKMXXXXXXXEYTDSEIVLFVRDALKSVTNTDDENYTDHYSQL 1958 MG EL +N + + ED + TD+++V F+R L SV+ D D Y+QL Sbjct: 1 MGAELENNQAQLHAMEDVNL---------TDAQLVDFIRGFLSSVSLGD----IDGYNQL 47 Query: 1957 IGVLNSTKRYNPDQVASLVTSLRALSRVTSYIDSYHHGSLLDSIFDIKMWDYGTDVMDAL 1778 +GV++ R +PD+VA LVT L+ALS S ID H SLL +IF + +WDYG++VMDAL Sbjct: 48 VGVIHHRDRLSPDEVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDAL 107 Query: 1777 MELIVSLSASG--YVVQCLHMLVKSFTPPKSFLPLLSQPRGIAKKKEVLDRVHSALKEIA 1604 +ELI+SL+ S YV CL MLV +F PP S++ LL +P G+ +K+EVL RVH+ALK+I+ Sbjct: 108 IELIISLAVSNGKYVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDIS 167 Query: 1603 DLVPLAPTTLQFRVLELMPHI-TNEN--EVYVENMLRLESGVFGTYLGKEILRA 1451 DLVPLAP L+ +V+ M + NE+ +YVENMLRLE G ++G++IL A Sbjct: 168 DLVPLAPLRLEQKVVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRKILTA 221