BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008670
         (2245 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263973.2| PREDICTED: RNA polymerase I-specific transcr...   398   e-108
emb|CBI37506.3| unnamed protein product [Vitis vinifera]              375   e-101
ref|XP_002524432.1| transcription initiation factor ia, putative...   370   e-100
ref|XP_002307198.1| predicted protein [Populus trichocarpa] gi|2...   360   7e-97
ref|XP_004155826.1| PREDICTED: RNA polymerase I-specific transcr...   353   8e-95

>ref|XP_002263973.2| PREDICTED: RNA polymerase I-specific transcription initiation factor
            RRN3-like [Vitis vinifera]
          Length = 636

 Score =  398 bits (1023), Expect = e-108
 Identities = 204/349 (58%), Positives = 251/349 (71%), Gaps = 9/349 (2%)
 Frame = -2

Query: 1311 DVCAEKLDRLMVLMCEHIKSCADDGRLIEVFETLLTSFETAILPAHKSKFAQFVIFYACS 1132
            ++ AEKLD LMVL  EH++SC   GRLIEVFETL+ SF+T +L A KSKFAQFV+FYAC+
Sbjct: 291  NLIAEKLDSLMVLTFEHLESCEAGGRLIEVFETLVLSFQTTVLNAFKSKFAQFVMFYACA 350

Query: 1131 LDPEVCGEKFAKKLYKSFVYGA-TPLIRMSAVAYLASYLARGRFLPSDLVVSTLESLADW 955
            LDPE CG +FA+ L   FV     PL RMSAVAYLASYL+RG+FL +  V + LE L  W
Sbjct: 351  LDPENCGVRFARVLADFFVCSTFPPLNRMSAVAYLASYLSRGKFLTASFVANILERLVVW 410

Query: 954  CSKYCKSQAIQEKSMNPELHKVFYSGCQAVMYVLCFRMRSIMDLPHLKSQLLCMPLEDIL 775
            C +YCK   I +  +NP+ H+VFYSGCQA+MYVLCFRMRS+M++PHL+SQLL +PLE IL
Sbjct: 411  CLEYCK---IHDGDINPKAHQVFYSGCQAIMYVLCFRMRSMMNVPHLRSQLLLLPLETIL 467

Query: 774  WNPLNPLKVCLPSIVNEFRLQAKAARLFAVAERLVFENLLESELSRTYGGMERLDMFFPF 595
             +PL+PLKVCLPSIV EF  QAKAARLF V+E  +F +LLESELSR +GG+ERLDMFFPF
Sbjct: 468  KHPLSPLKVCLPSIVEEFLRQAKAARLFTVSETFIFSDLLESELSRAFGGIERLDMFFPF 527

Query: 594  DPCLLKNCDRFIRPNFIYWSLANFTREHXXXXXXXXXXXXXXXXXXXXDVRESGMGMSYD 415
            DPCLLK CDRFIRPNF+YWS+   T +                      + +  M  SYD
Sbjct: 528  DPCLLKKCDRFIRPNFVYWSMIRTTYDDGEDSSDEEPAEDYEASHPDDVMNDDAMARSYD 587

Query: 414  GHEHELDAFENSIRQMSITPNISVMH--------NMPARLRPSTSPESL 292
             H+ ELD F++S+ +MSITP  S+ +         MP+R+RPSTSPESL
Sbjct: 588  SHDLELDEFDHSMNKMSITPKNSLYYRFGDELKVQMPSRIRPSTSPESL 636



 Score =  189 bits (481), Expect = 2e-45
 Identities = 116/241 (48%), Positives = 153/241 (63%), Gaps = 14/241 (5%)
 Frame = -1

Query: 2131 MGMELNSNYSNITEDNKMXXXXXXXEYTDSEIVLFVRDALKSVTNTDDENYTDHYSQLIG 1952
            MG+EL ++ +   E  ++        ++DSE+V  VR AL+SV   D    +D Y QLIG
Sbjct: 1    MGVELATDRAGFHEMEEVN-------FSDSELVYHVRHALQSVPLGD----SDSYDQLIG 49

Query: 1951 VLNSTKRYNPDQVASLVTSLRALSRVTSYIDSYHHGSLLDSIFDIKMWDYGTDVMDALME 1772
            VL+  +R  PD+VA LVTSL+ALS   S ID  HH SLL SIF + +W+YG DVMDAL+E
Sbjct: 50   VLHHKERLAPDEVALLVTSLKALSGAVSCIDMVHHKSLLSSIFGMSLWNYGPDVMDALLE 109

Query: 1771 LIVSLSA-SGYVVQC-LHMLVKSFTPPKSFLPLLSQPRGIAKKKEVLDRVHSALKEIADL 1598
            LI+SL+A SG  + C L MLV +F PP S L  L QPRG+A+K +VL RVHS LK+IADL
Sbjct: 110  LILSLAASSGNYLDCSLDMLVSNFMPPYSLLDFLKQPRGLARKDQVLSRVHSTLKDIADL 169

Query: 1597 VPLAPTTLQFRVLELMPHITNEN------------EVYVENMLRLESGVFGTYLGKEILR 1454
            VPLAP+ L   V++ MP++  +             ++YVENMLRLE G     +G  +L 
Sbjct: 170  VPLAPSRLVPIVIQRMPNVFTKEPVSSICSTLFRIQIYVENMLRLEGGAIRELVGNMMLV 229

Query: 1453 A 1451
            A
Sbjct: 230  A 230


>emb|CBI37506.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  375 bits (963), Expect = e-101
 Identities = 199/349 (57%), Positives = 244/349 (69%), Gaps = 9/349 (2%)
 Frame = -2

Query: 1311 DVCAEKLDRLMVLMCEHIKSCADDGRLIEVFETLLTSFETAILPAHKSKFAQFVIFYACS 1132
            ++ AEKLD LMVL  EH++SC   GRLIEVFETL+ SF+T +L A KSKFAQFV+FYAC+
Sbjct: 282  NLIAEKLDSLMVLTFEHLESCEAGGRLIEVFETLVLSFQTTVLNAFKSKFAQFVMFYACA 341

Query: 1131 LDPEVCGEKFAKKLYKSFVYGA-TPLIRMSAVAYLASYLARGRFLPSDLVVSTLESLADW 955
            LDPE CG +FA+ L   FV     PL RMSAVAYLASYL+RG+FL +  V + LE L  W
Sbjct: 342  LDPENCGVRFARVLADFFVCSTFPPLNRMSAVAYLASYLSRGKFLTASFVANILERLVVW 401

Query: 954  CSKYCKSQAIQEKSMNPELHKVFYSGCQAVMYVLCFRMRSIMDLPHLKSQLLCMPLEDIL 775
            C +YCK   I +  +NP+ H+VFYSGCQA+MYVLCFRMRS+M++PHL+SQLL +PLE IL
Sbjct: 402  CLEYCK---IHDGDINPKAHQVFYSGCQAIMYVLCFRMRSMMNVPHLRSQLLLLPLETIL 458

Query: 774  WNPLNPLKVCLPSIVNEFRLQAKAARLFAVAERLVFENLLESELSRTYGGMERLDMFFPF 595
             +PL+PLKVCLPSIV EF  QAKAARLF V+E  +F +LLESELSR +GG+ERLDMFFPF
Sbjct: 459  KHPLSPLKVCLPSIVEEFLRQAKAARLFTVSETFIFSDLLESELSRAFGGIERLDMFFPF 518

Query: 594  DPCLLKNCDRFIRPNFIYWSLANFTREHXXXXXXXXXXXXXXXXXXXXDVRESGMGMSYD 415
            DPCLLK CDRFIRPNF+YWS+   T +                         S    + D
Sbjct: 519  DPCLLKKCDRFIRPNFVYWSMIRTTYDDGED--------------------SSDEEPAED 558

Query: 414  GHEHELDAFENSIRQMSITPNISVMH--------NMPARLRPSTSPESL 292
                  D F++S+ +MSITP  S+ +         MP+R+RPSTSPESL
Sbjct: 559  YEASHPDDFDHSMNKMSITPKNSLYYRFGDELKVQMPSRIRPSTSPESL 607



 Score =  192 bits (487), Expect = 4e-46
 Identities = 116/232 (50%), Positives = 152/232 (65%), Gaps = 5/232 (2%)
 Frame = -1

Query: 2131 MGMELNSNYSNITEDNKMXXXXXXXEYTDSEIVLFVRDALKSVTNTDDENYTDHYSQLIG 1952
            MG+EL ++ +   E  ++        ++DSE+V  VR AL+SV   D    +D Y QLIG
Sbjct: 1    MGVELATDRAGFHEMEEVN-------FSDSELVYHVRHALQSVPLGD----SDSYDQLIG 49

Query: 1951 VLNSTKRYNPDQVASLVTSLRALSRVTSYIDSYHHGSLLDSIFDIKMWDYGTDVMDALME 1772
            VL+  +R  PD+VA LVTSL+ALS   S ID  HH SLL SIF + +W+YG DVMDAL+E
Sbjct: 50   VLHHKERLAPDEVALLVTSLKALSGAVSCIDMVHHKSLLSSIFGMSLWNYGPDVMDALLE 109

Query: 1771 LIVSLSA-SGYVVQC-LHMLVKSFTPPKSFLPLLSQPRGIAKKKEVLDRVHSALKEIADL 1598
            LI+SL+A SG  + C L MLV +F PP S L  L QPRG+A+K +VL RVHS LK+IADL
Sbjct: 110  LILSLAASSGNYLDCSLDMLVSNFMPPYSLLDFLKQPRGLARKDQVLSRVHSTLKDIADL 169

Query: 1597 VPLAPTTLQFRVLELMPHITNENE---VYVENMLRLESGVFGTYLGKEILRA 1451
            VPLAP+ L   V++ MP++  +     +YVENMLRLE G     +G  +L A
Sbjct: 170  VPLAPSRLVPIVIQRMPNVFTKEPLIMIYVENMLRLEGGAIRELVGNMMLVA 221


>ref|XP_002524432.1| transcription initiation factor ia, putative [Ricinus communis]
            gi|223536316|gb|EEF37967.1| transcription initiation
            factor ia, putative [Ricinus communis]
          Length = 640

 Score =  370 bits (950), Expect = e-100
 Identities = 193/350 (55%), Positives = 238/350 (68%), Gaps = 7/350 (2%)
 Frame = -2

Query: 1320 LQPDVCAEKLDRLMVLMCEHIKSCADDGRLIEVFETLLTSFETAILPAHKSKFAQFVIFY 1141
            L  +V A+ LD LMV + EH++ CA++ RL +VFETLL SF   IL  +KSKFAQFV+FY
Sbjct: 294  LGENVAADLLDSLMVRIFEHLELCANNKRLNDVFETLLDSFMLTILNTYKSKFAQFVMFY 353

Query: 1140 ACSLDPEVCGEKFAKKLYKSFVYGATPLIRMSAVAYLASYLARGRFLPSDLVVSTLESLA 961
            AC+LDPE CG +FA++L   F YG  PL RMSAVAYLASYLAR +FLP   V STL+ L 
Sbjct: 354  ACALDPENCGVEFAERLRDRFTYGENPLTRMSAVAYLASYLARAKFLPIAFVASTLKRLV 413

Query: 960  DWCSKYCKSQAIQEKSMNPELHKVFYSGCQAVMYVLCFRMRSIMDLPHLKSQLLCMPLED 781
            DWCS+YC++Q   +  MNP+ H+VFYSGCQA++YVLCFRM S+MD+P LKSQLL MPLE 
Sbjct: 414  DWCSEYCRNQ---DGDMNPKAHRVFYSGCQAILYVLCFRMSSMMDIPWLKSQLLHMPLEQ 470

Query: 780  ILWNPLNPLKVCLPSIVNEFRLQAKAARLFAVAERLVFENLLESELSRTYGGMERLDMFF 601
            I+ + L PLKVCLPSIV EF  QAKAA LF  ++   FE++LESE S+ +GG+ERLDMFF
Sbjct: 471  IMKHKLGPLKVCLPSIVEEFLKQAKAAHLFTTSQTSSFEDVLESEFSKDFGGLERLDMFF 530

Query: 600  PFDPCLLKNCDR-FIRPNFIYWSLANFTREHXXXXXXXXXXXXXXXXXXXXDVRESGMGM 424
            PFDPCLL+ CDR FIRPNF+YW     T                          E GM  
Sbjct: 531  PFDPCLLRTCDRSFIRPNFVYWKDVRTTYGSDEEDSSDEDIAEDFTDINGGSYMEEGMAT 590

Query: 423  SYDGHEHELDAFENSIRQMSITP------NISVMHNMPARLRPSTSPESL 292
            S DG   +LD F+ ++ +MSITP             MP+++RPSTSPESL
Sbjct: 591  SLDGQHLDLDEFDYAMNKMSITPKNRFGIRFGERMQMPSKIRPSTSPESL 640



 Score =  190 bits (482), Expect = 2e-45
 Identities = 109/244 (44%), Positives = 149/244 (61%), Gaps = 17/244 (6%)
 Frame = -1

Query: 2131 MGMELNSNYSNITEDNKMXXXXXXXEYTDSEIVLFVRDALKSVTNTDDENYTDHYSQLIG 1952
            MG+EL+S Y    ED +         YTDS++V  VRDAL SV   D    T+ Y QL+G
Sbjct: 1    MGVELDSQYKKEIEDME----DDGVNYTDSDLVYHVRDALHSVQYGD----TNSYDQLVG 52

Query: 1951 VLNSTKRYNPDQVASLVTSLRALSRVTSYIDSYHHGSLLDSIFDIKMWDYGTDVMDALME 1772
            V++ ++R  PD VA L+TSL+ALS   SYID  HH  LL SIF + +W+YG DVM+AL+E
Sbjct: 53   VMHHSQRLTPDDVALLLTSLKALSGAVSYIDECHHDRLLQSIFGMSIWNYGPDVMEALLE 112

Query: 1771 LIVSLSASG--YVVQCLHMLVKSFTPPKSFLPLLSQPRGIAKKKEVLDRVHSALKEIADL 1598
            LI++L+AS   Y+  CL MLV +F PP   + +L  PRG AKK++VL R+H+AL++IA L
Sbjct: 113  LIIALAASNGKYIDPCLKMLVTNFVPPMYLIDILKLPRGQAKKEQVLSRLHTALEDIAHL 172

Query: 1597 VPLAPTTLQFRVLELMPHITN---------------ENEVYVENMLRLESGVFGTYLGKE 1463
            +P+A + L   V+  +  I                   E+YVENMLRLESG    ++G  
Sbjct: 173  IPMAASRLSTEVVSEIQRIPTTFKKDQYHEKDRVKYRTEIYVENMLRLESGAIREFVGSR 232

Query: 1462 ILRA 1451
            +L A
Sbjct: 233  MLMA 236


>ref|XP_002307198.1| predicted protein [Populus trichocarpa] gi|222856647|gb|EEE94194.1|
            predicted protein [Populus trichocarpa]
          Length = 635

 Score =  360 bits (925), Expect = 7e-97
 Identities = 191/350 (54%), Positives = 242/350 (69%), Gaps = 7/350 (2%)
 Frame = -2

Query: 1320 LQPDVCAEKLDRLMVLMCEHIKSCADDGRLIEVFETLLTSFETAILPAHKSKFAQFVIFY 1141
            L  +V A+ LD LM+   EH+++CAD  RL EVFETLL+SF   IL  +KSKF+QF IFY
Sbjct: 290  LGKNVTADLLDSLMIQFLEHLEACADKKRLSEVFETLLSSFMATILNTYKSKFSQFTIFY 349

Query: 1140 ACSLDPEVCGEKFAKKLYKSFVYGATPLI-RMSAVAYLASYLARGRFLPSDLVVSTLESL 964
            AC+LDPE CG KFA+ L   F+    P + RMSAVAYL+SYLARG+FL +  V++ L+ L
Sbjct: 350  ACALDPENCGVKFAQTLVDLFISTCNPPVTRMSAVAYLSSYLARGKFLSAAFVMNMLKRL 409

Query: 963  ADWCSKYCKSQAIQEKSMNPELHKVFYSGCQAVMYVLCFRMRSIMDLPHLKSQLLCMPLE 784
             DWC +YC+ Q   +  MNP+ H+VFYS CQ +MYVLCF M+SIM++P LKSQLL MP+E
Sbjct: 410  VDWCLRYCEEQ---DSDMNPKAHQVFYSACQGIMYVLCFHMKSIMNVPTLKSQLLLMPIE 466

Query: 783  DILWNPLNPLKVCLPSIVNEFRLQAKAARLFAVAERLVFENLLESELSRTYGGMERLDMF 604
             IL + L PL+VCLPSIVNEF  QAKAA LF +++  +FE+LLES+LSR +GG+ERLDMF
Sbjct: 467  PILKHKLGPLEVCLPSIVNEFLKQAKAAHLFTISKAFIFEDLLESDLSRDFGGLERLDMF 526

Query: 603  FPFDPCLLKNCDR-FIRPNFIYWSLANFTREHXXXXXXXXXXXXXXXXXXXXDVRESGMG 427
            FPFDPCLLK CDR FIRPNFIYW+    T +                     +  E GM 
Sbjct: 527  FPFDPCLLKKCDRGFIRPNFIYWNHVKTTYDDDEEDSSDEDIADDFGVLNEENFMEEGMA 586

Query: 426  MSYDGHEHELDAFENSIRQMSITP-NISVMH----NMPARLRPSTSPESL 292
             S+D  + +LD F+  + +MSITP N S  H     MP+++RPSTSPESL
Sbjct: 587  RSFD-QDIDLDEFDYVMNKMSITPKNTSGFHFGGERMPSKIRPSTSPESL 635



 Score =  158 bits (400), Expect = 5e-36
 Identities = 100/235 (42%), Positives = 131/235 (55%), Gaps = 10/235 (4%)
 Frame = -1

Query: 2131 MGMELNSNYSNITEDNKMXXXXXXXEYTDSEIVLFVRDALKSVTNTDDENYTDHYSQLIG 1952
            MG+EL   Y+                 TD ++V  VRDAL SV   D  +Y     QL+G
Sbjct: 1    MGVELTHQYTEYRAMEDQEEVEEGVSITDWDLVYHVRDALLSVKTGDRSSY----HQLVG 56

Query: 1951 VLNSTKRYNPDQVASLVTSLRALSRVTSYIDSYHHGSLLDSIFDIKMWDYGTDVMDALME 1772
            VL+   R  PD+VA L+TSL+ALS   SYI+   H SLL SIF + MW+   DVMDAL+E
Sbjct: 57   VLHHRDRSAPDKVALLLTSLKALSGAVSYINDVDHVSLLQSIFGMSMWNCAPDVMDALLE 116

Query: 1771 LIVSLSASG--YVVQCLHMLVKSFTPPKSFLPLLSQPRGIAKKKEVLDRVHSALKEIADL 1598
            LI+ L+AS   YV  CL MLV +F PP     +L  PRG AKK +VL RVH+ L+ I DL
Sbjct: 117  LIICLAASNGKYVDLCLDMLVNNFMPPME-SDMLRHPRGQAKKDQVLPRVHTGLEVIVDL 175

Query: 1597 VPLAPTTLQFRVLELMPHITNEN--------EVYVENMLRLESGVFGTYLGKEIL 1457
            VPLA   L   V++  P    ++         +Y++NML LE G    ++G  +L
Sbjct: 176  VPLAALKLSTNVVQKRPMFFRKDFNMDRLKCRIYLKNMLMLEGGAIREFVGHSML 230


>ref|XP_004155826.1| PREDICTED: RNA polymerase I-specific transcription initiation factor
            RRN3-like [Cucumis sativus]
          Length = 625

 Score =  353 bits (907), Expect = 8e-95
 Identities = 184/349 (52%), Positives = 238/349 (68%), Gaps = 11/349 (3%)
 Frame = -2

Query: 1311 DVCAEKLDRLMVLMCEHIKSCADDGRLIEVFETLLTSFETAILPAHKSKFAQFVIFYACS 1132
            +V AE LD L+VL  EH++SC  DGRL EVF+ LL SF+  +L A+KSKFAQF++FYACS
Sbjct: 281  NVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACS 340

Query: 1131 LDPEVCGEKFAKKLYKSFVY-GATPLIRMSAVAYLASYLARGRFLPSDLVVSTLESLADW 955
            LDPEVCG +FA  L   FV     PLIRMSAV+YLAS+L+RG+FL + LV + L+ L DW
Sbjct: 341  LDPEVCGARFAISLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDW 400

Query: 954  CSKYCKSQAIQEKSMNPELHKVFYSGCQAVMYVLCFRMRSIMDLPHLKSQLLCMPLEDIL 775
            C +Y K+  +     NP+ HKVFYSGCQA+MYVLCFRMRSI+++P LKSQLL MP+  +L
Sbjct: 401  CLEYGKTLNVDP---NPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLL 457

Query: 774  WNPLNPLKVCLPSIVNEFRLQAKAARLFAVAERLVFENLLESELSRTYGGMERLDMFFPF 595
             + L+PLKVCLPSIV EF  QAK A LF  +E  +F  LLES+ SR++GG+ERLDMFFPF
Sbjct: 458  THRLSPLKVCLPSIVEEFLRQAKVANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPF 517

Query: 594  DPCLLKNCDRFIRPNFIYWSLANFTREHXXXXXXXXXXXXXXXXXXXXDVRES-----GM 430
            DPCLLK CDR++RP+F+YWS+   T +                      + E+      M
Sbjct: 518  DPCLLKKCDRYLRPHFVYWSMVRPTYDEEEEEEDDGGSSDEDAEIFPDRIDENLMDDEAM 577

Query: 429  GMSYDGHEHELDAFENSIRQMSITPNISVMH-----NMPARLRPSTSPE 298
             +SYD  + +LD   + + +MSITP  S+ +      MP+R+RPS SPE
Sbjct: 578  AISYDDQDFDLD---SGLNKMSITPRNSLQYRCDFVQMPSRIRPSMSPE 623



 Score =  188 bits (478), Expect = 5e-45
 Identities = 110/234 (47%), Positives = 154/234 (65%), Gaps = 7/234 (2%)
 Frame = -1

Query: 2131 MGMELNSNYSNI--TEDNKMXXXXXXXEYTDSEIVLFVRDALKSVTNTDDENYTDHYSQL 1958
            MG EL +N + +   ED  +         TD+++V F+R  L SV+  D     D Y+QL
Sbjct: 1    MGAELENNQAQLHAMEDVNL---------TDAQLVDFIRGFLSSVSLGD----IDGYNQL 47

Query: 1957 IGVLNSTKRYNPDQVASLVTSLRALSRVTSYIDSYHHGSLLDSIFDIKMWDYGTDVMDAL 1778
            +GV++   R +PD+VA LVT L+ALS   S ID   H SLL +IF + +WDYG++VMDAL
Sbjct: 48   VGVIHHRDRLSPDEVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDAL 107

Query: 1777 MELIVSLSASG--YVVQCLHMLVKSFTPPKSFLPLLSQPRGIAKKKEVLDRVHSALKEIA 1604
            +ELI+SL+ S   YV  CL MLV +F PP S++ LL +P G+ +K+EVL RVH+ALK+I+
Sbjct: 108  IELIISLAVSNGKYVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDIS 167

Query: 1603 DLVPLAPTTLQFRVLELMPHI-TNEN--EVYVENMLRLESGVFGTYLGKEILRA 1451
            DLVPLAP  L+ +V+  M  +  NE+   +YVENMLRLE G    ++G++IL A
Sbjct: 168  DLVPLAPLRLEQKVVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRKILTA 221