BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008659
         (716 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_045100.1| photosystem II 47 kDa protein [Cyanidium caldar...    64   2e-08
ref|XP_004134361.1| PREDICTED: photosystem II CP47 chlorophyll a...    62   9e-08
gb|AAN32203.1| photosystem II CP47 protein, partial (chloroplast...    62   1e-07
ref|YP_636435.1| photosystem II 47 kDa protein [Staurastrum punc...    62   2e-07
gb|ACD93066.1| CP47 protein [Dennstaedtia punctilobula]                62   2e-07

>ref|NP_045100.1| photosystem II 47 kDa protein [Cyanidium caldarium]
           gi|3122630|sp|O19928.1|PSBB_CYACA RecName:
           Full=Photosystem II CP47 chlorophyll apoprotein;
           AltName: Full=PSII 47 kDa protein; AltName: Full=Protein
           CP-47; AltName: Full=PsbB gi|2465732|gb|AAB82661.1|
           unknown [Cyanidium caldarium]
          Length = 509

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 29/46 (63%), Positives = 33/46 (71%)
 Frame = -1

Query: 404 QTFIDKGLVFRSSPRGWFTFGHARFALLFFFGDIRHGTNLLLPSGF 267
           +T +D   VFRSSPRGWFTFGHA FALLFFFG + HG+  L    F
Sbjct: 434 RTILDSDGVFRSSPRGWFTFGHANFALLFFFGHLWHGSRTLFRDVF 479


>ref|XP_004134361.1| PREDICTED: photosystem II CP47 chlorophyll apoprotein-like [Cucumis
           sativus]
          Length = 125

 Score = 62.4 bits (150), Expect = 9e-08
 Identities = 29/39 (74%), Positives = 29/39 (74%)
 Frame = -1

Query: 380 VFRSSPRGWFTFGHARFALLFFFGDIRHGTNLLLPSGFL 264
           VFRSSPRGWFTFGHA FALLFFFG I HG   L    FL
Sbjct: 87  VFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFL 125


>gb|AAN32203.1| photosystem II CP47 protein, partial (chloroplast) [Cyanastrum
           cordifolium]
          Length = 498

 Score = 62.0 bits (149), Expect = 1e-07
 Identities = 28/38 (73%), Positives = 28/38 (73%)
 Frame = -1

Query: 380 VFRSSPRGWFTFGHARFALLFFFGDIRHGTNLLLPSGF 267
           VFRSSPRGWFTFGHA FALLFFFG I HG   L    F
Sbjct: 432 VFRSSPRGWFTFGHATFALLFFFGHIWHGARTLFRDAF 469


>ref|YP_636435.1| photosystem II 47 kDa protein [Staurastrum punctulatum]
           gi|122211786|sp|Q32RU1.1|PSBB_STAPU RecName:
           Full=Photosystem II CP47 chlorophyll apoprotein;
           AltName: Full=PSII 47 kDa protein; AltName: Full=Protein
           CP-47 gi|61393581|gb|AAX45722.1| CP47 chlorophyll
           apoprotein of photosystem II [Staurastrum punctulatum]
          Length = 508

 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 28/38 (73%), Positives = 29/38 (76%)
 Frame = -1

Query: 380 VFRSSPRGWFTFGHARFALLFFFGDIRHGTNLLLPSGF 267
           VFRSSPRGWFTFGHA FALLFFFG I HG+  L    F
Sbjct: 442 VFRSSPRGWFTFGHANFALLFFFGHIWHGSRTLFRDVF 479


>gb|ACD93066.1| CP47 protein [Dennstaedtia punctilobula]
          Length = 499

 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 28/38 (73%), Positives = 29/38 (76%)
 Frame = -1

Query: 380 VFRSSPRGWFTFGHARFALLFFFGDIRHGTNLLLPSGF 267
           VFRSSPRGWFTFGHA FAL+FFFG I HG   LL   F
Sbjct: 432 VFRSSPRGWFTFGHATFALIFFFGHIWHGARTLLRDVF 469