BLASTX nr result

ID: Coptis24_contig00008622 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008622
         (494 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283770.1| PREDICTED: uncharacterized protein LOC100243...    77   6e-18
ref|XP_003544249.1| PREDICTED: uncharacterized protein LOC100786...    51   1e-06

>ref|XP_002283770.1| PREDICTED: uncharacterized protein LOC100243767 [Vitis vinifera]
           gi|302142075|emb|CBI19278.3| unnamed protein product
           [Vitis vinifera]
          Length = 347

 Score = 77.4 bits (189), Expect(2) = 6e-18
 Identities = 41/90 (45%), Positives = 47/90 (52%)
 Frame = +3

Query: 3   PNPGFGQGGIPYPYSGRGSGLQFSNRGCPGWGRGGSPSPNAXXXXXXXXXXXXXXXXXXX 182
           P+PGF   G P   SGRG G  F+N   P  GRGGS SPN+                   
Sbjct: 188 PSPGFRPVGSPSFRSGRGRGHWFNNSPSPVSGRGGSSSPNSGRGRSGWFGNSMSPGSGRG 247

Query: 183 XXXXXXFHGHVSARESPELFYNKSMLEDPW 272
                 FH HVSA++ PELFYNKSM+EDPW
Sbjct: 248 RGRGLGFHAHVSAQDRPELFYNKSMVEDPW 277



 Score = 38.1 bits (87), Expect(2) = 6e-18
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 9/49 (18%)
 Frame = +2

Query: 341 MLEDPWRFLKPVV--REITVSE-------ETSWLPKSISRKDIVPKAAT 460
           M+EDPW+FLKPV+  RE  + +         SWLPKSI+ K      AT
Sbjct: 272 MVEDPWKFLKPVIWSREKALGKMGNASDSPKSWLPKSINMKKTRVSEAT 320


>ref|XP_003544249.1| PREDICTED: uncharacterized protein LOC100786030 [Glycine max]
          Length = 720

 Score = 50.8 bits (120), Expect(2) = 1e-06
 Identities = 33/93 (35%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
 Frame = +3

Query: 3   PNPGFGQGGIPYPYSGRGSGLQFSNRGCPGWGRGGSPSPNAXXXXXXXXXXXXXXXXXXX 182
           PNP  G    P P  GRG G  + N G P  GRG    PN                    
Sbjct: 585 PNPSPGYRNSPSPGQGRGRGF-WRNTGSPVSGRGSGQGPN-------------------- 623

Query: 183 XXXXXXFHGHVSARES---PELFYNKSMLEDPW 272
                 FHGH S   +   P+ FYN+SM+EDPW
Sbjct: 624 ------FHGHRSNENTARGPDRFYNRSMVEDPW 650



 Score = 26.2 bits (56), Expect(2) = 1e-06
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
 Frame = +2

Query: 341 MLEDPWRFLKPVVREITVS---------EETSWLPKSISRKDIVPKAATVFPSG--SIAE 487
           M+EDPW  L+P++ +                 W+ K+ S K     AA+V  S   S+AE
Sbjct: 645 MVEDPWEHLEPIIWKANDGYLNTSRIPLNSQPWISKATSTKGEGSSAASVKSSSEPSLAE 704


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