BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008615
         (1122 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK95696.1| unknown [Populus trichocarpa]                          374   e-101
ref|XP_002308316.1| predicted protein [Populus trichocarpa] gi|2...   372   e-100
ref|XP_002284711.1| PREDICTED: sigma factor sigB regulation prot...   367   3e-99
ref|XP_002284715.1| PREDICTED: sigma factor sigB regulation prot...   360   3e-97
ref|XP_002515580.1| sigma factor sigb regulation protein rsbq, p...   358   1e-96

>gb|ABK95696.1| unknown [Populus trichocarpa]
          Length = 278

 Score =  374 bits (959), Expect = e-101
 Identities = 180/269 (66%), Positives = 216/269 (80%)
 Frame = -3

Query: 1003 MVVQDTSLKASMNARIIGSGDDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGA 824
            MVV +  L  ++NAR+ GSG++ +ILAHGFGGDQS+WDK V  LA+   V+VFDW FSGA
Sbjct: 1    MVVPEKGLSGALNARVTGSGNEAIILAHGFGGDQSVWDKIVPRLAKHCRVLVFDWIFSGA 60

Query: 823  TNDPSMFDPVKYSSYDAFAKDLIALLDEMNLSSSVFIGHSMSGMIGCLASIKRPDLFKRL 644
              DP++FDPVKYSSYDAFA DLI+L+DE++L SSV +GHSMSGMIGC+ASIKRPDLFK+L
Sbjct: 61   IKDPNLFDPVKYSSYDAFANDLISLMDELDLKSSVLVGHSMSGMIGCIASIKRPDLFKKL 120

Query: 643  VLIGASPRYLNSEDYEGGFEKPQIEEIFLNIESNFQMWATNFASLVVDAKDPPSVEQFSK 464
            +L+GASPRY+N++DYEGGF   ++E+I  NIESN+  WA  FAS VVDA DPPSV+ FSK
Sbjct: 121  ILVGASPRYINADDYEGGFSNSEVEDIISNIESNYYNWAQAFASAVVDANDPPSVDMFSK 180

Query: 463  SLGRMRPEVALSLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKINGKS 284
             L RMRPE A+ +AKTVF  D    L+KV  PC I+QT+ DIVVPNSVAYYMQ+KI GKS
Sbjct: 181  CLQRMRPEFAVPVAKTVFYCDERDILEKVLTPCIIVQTTRDIVVPNSVAYYMQEKIKGKS 240

Query: 283  TVEIIEADGHFPQLTKTKQLLDVLYRVMS 197
            TVEIIE DGHFP LT  +QLLDVL   MS
Sbjct: 241  TVEIIETDGHFPHLTAHQQLLDVLIAAMS 269


>ref|XP_002308316.1| predicted protein [Populus trichocarpa] gi|222854292|gb|EEE91839.1|
            predicted protein [Populus trichocarpa]
          Length = 264

 Score =  372 bits (954), Expect = e-100
 Identities = 178/264 (67%), Positives = 215/264 (81%)
 Frame = -3

Query: 1003 MVVQDTSLKASMNARIIGSGDDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGA 824
            MVV +  L  ++NAR+ GSG++ +ILAHGFGGDQS+WDK V  LA+   V+VFDW FSGA
Sbjct: 1    MVVPEKGLSGALNARVTGSGNEAIILAHGFGGDQSVWDKIVPRLAKHCRVLVFDWIFSGA 60

Query: 823  TNDPSMFDPVKYSSYDAFAKDLIALLDEMNLSSSVFIGHSMSGMIGCLASIKRPDLFKRL 644
              DP++FDPVKYSSYDAFA DLI+L+DE++L SSV +GHSMSGMIGC+ASIKRPDLFK+L
Sbjct: 61   IKDPNLFDPVKYSSYDAFANDLISLMDELDLKSSVLVGHSMSGMIGCIASIKRPDLFKKL 120

Query: 643  VLIGASPRYLNSEDYEGGFEKPQIEEIFLNIESNFQMWATNFASLVVDAKDPPSVEQFSK 464
            +L+GASPRY+N++DYEGGF   ++E+I  NIESN+  WA  FAS+VVDA DPPSV+ FSK
Sbjct: 121  ILVGASPRYINADDYEGGFSNSEVEDIISNIESNYYNWAQAFASVVVDANDPPSVDMFSK 180

Query: 463  SLGRMRPEVALSLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKINGKS 284
             L RMRPE A+ +AKTVF  D    L+KV  PC I+QT+ DIVVPNSVAYYMQ+KI GKS
Sbjct: 181  CLQRMRPEFAVPVAKTVFYCDERDILEKVLTPCIIVQTTRDIVVPNSVAYYMQEKIKGKS 240

Query: 283  TVEIIEADGHFPQLTKTKQLLDVL 212
            TVEIIE DGHFP LT  +QLLDVL
Sbjct: 241  TVEIIETDGHFPHLTAHQQLLDVL 264


>ref|XP_002284711.1| PREDICTED: sigma factor sigB regulation protein rsbQ isoform 1 [Vitis
            vinifera] gi|297738861|emb|CBI28106.3| unnamed protein
            product [Vitis vinifera]
          Length = 277

 Score =  367 bits (942), Expect = 3e-99
 Identities = 180/268 (67%), Positives = 212/268 (79%)
 Frame = -3

Query: 1003 MVVQDTSLKASMNARIIGSGDDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGA 824
            M+V +  L A+MNAR+IG G++ ++LAHGFGGDQS+WDK    LA+ Y V+VFDWNFSGA
Sbjct: 1    MLVIEKGLSAAMNARMIGFGNEAIVLAHGFGGDQSLWDKITPHLARSYRVLVFDWNFSGA 60

Query: 823  TNDPSMFDPVKYSSYDAFAKDLIALLDEMNLSSSVFIGHSMSGMIGCLASIKRPDLFKRL 644
              DPS++D  KYSSYDAFA DLIALLDE  L +SVF+GHSMSGMIGC+ASIKRP+LFKRL
Sbjct: 61   VKDPSLYDSTKYSSYDAFADDLIALLDEFKLLASVFVGHSMSGMIGCIASIKRPELFKRL 120

Query: 643  VLIGASPRYLNSEDYEGGFEKPQIEEIFLNIESNFQMWATNFASLVVDAKDPPSVEQFSK 464
            + I ASPRYLN+ +YEGGFE+ +IE+IF NIES+F  WA+NFA L VD  DP SVE+  K
Sbjct: 121  IFIAASPRYLNANNYEGGFERSEIEQIFANIESDFDKWASNFAPLAVDVNDPLSVEKVEK 180

Query: 463  SLGRMRPEVALSLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKINGKS 284
             + RMRPEVAL LAKTVFC D    LDKV  PCTI+Q +NDIV P SVA YMQKKI GK+
Sbjct: 181  CIRRMRPEVALPLAKTVFCCDHRDILDKVTTPCTIVQPTNDIVAPISVAEYMQKKIKGKT 240

Query: 283  TVEIIEADGHFPQLTKTKQLLDVLYRVM 200
            TVEII+ DGHFPQLT   QLL VL  V+
Sbjct: 241  TVEIIDMDGHFPQLTAHLQLLSVLDSVL 268


>ref|XP_002284715.1| PREDICTED: sigma factor sigB regulation protein rsbQ isoform 2
           [Vitis vinifera]
          Length = 269

 Score =  360 bits (925), Expect = 3e-97
 Identities = 176/257 (68%), Positives = 205/257 (79%)
 Frame = -3

Query: 970 MNARIIGSGDDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGATNDPSMFDPVK 791
           MNAR+IG G++ ++LAHGFGGDQS+WDK    LA+ Y V+VFDWNFSGA  DPS++D  K
Sbjct: 4   MNARMIGFGNEAIVLAHGFGGDQSLWDKITPHLARSYRVLVFDWNFSGAVKDPSLYDSTK 63

Query: 790 YSSYDAFAKDLIALLDEMNLSSSVFIGHSMSGMIGCLASIKRPDLFKRLVLIGASPRYLN 611
           YSSYDAFA DLIALLDE  L +SVF+GHSMSGMIGC+ASIKRP+LFKRL+ I ASPRYLN
Sbjct: 64  YSSYDAFADDLIALLDEFKLLASVFVGHSMSGMIGCIASIKRPELFKRLIFIAASPRYLN 123

Query: 610 SEDYEGGFEKPQIEEIFLNIESNFQMWATNFASLVVDAKDPPSVEQFSKSLGRMRPEVAL 431
           + +YEGGFE+ +IE+IF NIES+F  WA+NFA L VD  DP SVE+  K + RMRPEVAL
Sbjct: 124 ANNYEGGFERSEIEQIFANIESDFDKWASNFAPLAVDVNDPLSVEKVEKCIRRMRPEVAL 183

Query: 430 SLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKINGKSTVEIIEADGHF 251
            LAKTVFC D    LDKV  PCTI+Q +NDIV P SVA YMQKKI GK+TVEII+ DGHF
Sbjct: 184 PLAKTVFCCDHRDILDKVTTPCTIVQPTNDIVAPISVAEYMQKKIKGKTTVEIIDMDGHF 243

Query: 250 PQLTKTKQLLDVLYRVM 200
           PQLT   QLL VL  V+
Sbjct: 244 PQLTAHLQLLSVLDSVL 260


>ref|XP_002515580.1| sigma factor sigb regulation protein rsbq, putative [Ricinus
            communis] gi|223545524|gb|EEF47029.1| sigma factor sigb
            regulation protein rsbq, putative [Ricinus communis]
          Length = 276

 Score =  358 bits (919), Expect = 1e-96
 Identities = 175/272 (64%), Positives = 217/272 (79%), Gaps = 4/272 (1%)
 Frame = -3

Query: 1003 MVVQDTSLKASMNARIIGSGDDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGA 824
            MV+ +T L  +MNA++IG+G++T++LAHG+GGDQS WDK V  LA+ + ++VFDW FSGA
Sbjct: 1    MVMLETGLSTAMNAKVIGTGEETIVLAHGYGGDQSAWDKIVPDLAKYFRILVFDWLFSGA 60

Query: 823  TNDPSMFDPVKYSSYDAFAKDLIALLDEMNLSSS--VFIGHSMSGMIGCLASIKRPDLFK 650
              D  +FDP KY+S+DAFA DLI LL+EM+L SS  VF+GHSMSGMIGC+ASIKRP+LFK
Sbjct: 61   VKDQQLFDPEKYASFDAFADDLICLLEEMSLISSPVVFVGHSMSGMIGCIASIKRPELFK 120

Query: 649  RLVLIGASPRYLNSEDYEGGFEKPQIEEIFLNIESNFQMWATNFASLVVDAKD--PPSVE 476
            RL+L+GASPRY+N +DYEGGF+K  +++I  NIESNFQ W   FASLVV AKD  P SVE
Sbjct: 121  RLILVGASPRYINIDDYEGGFKKTDVDDIISNIESNFQNWTPGFASLVVGAKDKDPDSVE 180

Query: 475  QFSKSLGRMRPEVALSLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKI 296
            QF+K L  M+PE ALS+AKTVF SD    LDKV  PCTI+QT+ D+VVPNSV YYMQ+KI
Sbjct: 181  QFTKCLSNMKPEHALSVAKTVFYSDEREILDKVSTPCTIVQTTGDLVVPNSVVYYMQEKI 240

Query: 295  NGKSTVEIIEADGHFPQLTKTKQLLDVLYRVM 200
             GKS+VE I+ DGHFP LT  +QLLDVL  V+
Sbjct: 241  KGKSSVEFIDTDGHFPHLTAHQQLLDVLTAVL 272