BLASTX nr result
ID: Coptis24_contig00008606
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00008606
(2762 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas... 332 4e-88
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas... 327 1e-86
ref|NP_001066197.2| Os12g0156200 [Oryza sativa Japonica Group] g... 326 2e-86
gb|AAQ19327.1| bZIP-like protein [Oryza sativa Japonica Group] 326 2e-86
emb|CAN70922.1| hypothetical protein VITISV_016266 [Vitis vinifera] 324 9e-86
>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 642
Score = 332 bits (850), Expect = 4e-88
Identities = 159/416 (38%), Positives = 254/416 (61%)
Frame = -2
Query: 2755 AVKSFFREAIIPKGANASFIALIPKDKNASKLSQYRPICMSNFLIKIFSKILQIRLNNFI 2576
AV FF+ +P NA+ I LIPK NA + QYR I + NF KI +K+L RL +
Sbjct: 219 AVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKIL 278
Query: 2575 EVLVSKEQSGFIKGREPQTSIGFASEMMNALDKKVYGGSFALKVDISQAYDTLSWEFLVV 2396
++SKEQ GF++GR + I SE +N LD K +GG+ ALK+D+++A+DTL+W+FL++
Sbjct: 279 PSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLL 338
Query: 2395 VLERFGFAEKWIKMVMALLKTARLSVLLNGGPVGYIPVGRGLRQGDPLSPLLFALAEDTL 2216
VL+ FGF E + + +L ++++ + +NG G+ RG+RQGDPLSPLLF + E+ L
Sbjct: 339 VLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVL 398
Query: 2215 SQGLNKLREIRETMPLTSAKGVSAPTHLLYADDIIIFSRGDYRSVANIAELLERYQVSSG 2036
S+ ++ L + + +++ P H Y DD+++F + S+ + L RY SG
Sbjct: 399 SRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSG 458
Query: 2035 QIINKTKSKMFLGGMAQERQDHLHHILNIQIGALPEKYLGVPLIAGRITRAVVTPLLDKI 1856
QI+N KS +F GG+ R +++ +IL +G+LP YLG P+ G+ P+ DK+
Sbjct: 459 QIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKV 518
Query: 1855 RKRIIAWKGKLLSFQGRHVLIQSVLSSIPVYNMGVYKWPSSVIKEAESIFRNFLWSGNPA 1676
+ ++ WK LLS GR L++SV+ S+ V+ M +Y WP ++KE E +NF+WSG+
Sbjct: 519 KAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVT 578
Query: 1675 IKKCVTVSWDKVCKPKEEGGLGIRRLRELNMALLMKLAWHVKYKEDDFVVFMRSKY 1508
+K VTV+W K+C EEGGLG++ L LN A +K+ W++ ++ + +R+ +
Sbjct: 579 KRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQSDEQWANIIRNSW 634
>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 528
Score = 327 bits (837), Expect = 1e-86
Identities = 170/399 (42%), Positives = 243/399 (60%)
Frame = -2
Query: 2755 AVKSFFREAIIPKGANASFIALIPKDKNASKLSQYRPICMSNFLIKIFSKILQIRLNNFI 2576
AV FF I NA+ + LIPK +NA + Q+RPI M+NF KI SKIL RL +
Sbjct: 158 AVLQFFNTGWILPNFNANTLILIPKTQNADSMDQFRPIAMANFKFKIISKILADRLAQIM 217
Query: 2575 EVLVSKEQSGFIKGREPQTSIGFASEMMNALDKKVYGGSFALKVDISQAYDTLSWEFLVV 2396
+VS+EQ GFI+GR + + ASE +N LD+K +GG+ A KVDIS+A+DTL+W+FL+
Sbjct: 218 PNIVSQEQRGFIQGRNIKDCVCLASEAINMLDQKSFGGNLAFKVDISKAFDTLNWKFLLK 277
Query: 2395 VLERFGFAEKWIKMVMALLKTARLSVLLNGGPVGYIPVGRGLRQGDPLSPLLFALAEDTL 2216
VL++FGF+E + + A+L++A+LS+ +NG GY RG+RQGDPLSPLLF LAED L
Sbjct: 278 VLKQFGFSETFCNWIDAILQSAKLSICINGSQQGYFSCSRGVRQGDPLSPLLFCLAEDVL 337
Query: 2215 SQGLNKLREIRETMPLTSAKGVSAPTHLLYADDIIIFSRGDYRSVANIAELLERYQVSSG 2036
S+ L KL E + + + P+H+LYADDI+IF
Sbjct: 338 SRSLTKLVEQGKLKQMRGTRNCLVPSHILYADDIMIFCN--------------------- 376
Query: 2035 QIINKTKSKMFLGGMAQERQDHLHHILNIQIGALPEKYLGVPLIAGRITRAVVTPLLDKI 1856
GG++ R L +++ G+ P YLGVP+ G+ + P++DKI
Sbjct: 377 ------------GGISDARLQQLINVIGFNKGSFPFNYLGVPIFKGKPKARFLQPIVDKI 424
Query: 1855 RKRIIAWKGKLLSFQGRHVLIQSVLSSIPVYNMGVYKWPSSVIKEAESIFRNFLWSGNPA 1676
+ ++ WK +LS GR LI+SV S+ ++ + +Y WPS ++KE E+ FRNF+WSG+
Sbjct: 425 KTKLSNWKASILSIAGRVQLIKSVAQSMLIHTITIYDWPSFLLKELETCFRNFIWSGDIT 484
Query: 1675 IKKCVTVSWDKVCKPKEEGGLGIRRLRELNMALLMKLAW 1559
+K VTV+W K+CKP+ +GGLGIR L +LN A +KL W
Sbjct: 485 KRKLVTVAWKKLCKPQSQGGLGIRSLSQLNAAGNLKLCW 523
>ref|NP_001066197.2| Os12g0156200 [Oryza sativa Japonica Group]
gi|108862221|gb|ABA96496.2| retrotransposon protein,
putative, unclassified, expressed [Oryza sativa Japonica
Group] gi|255670064|dbj|BAF29216.2| Os12g0156200 [Oryza
sativa Japonica Group]
Length = 1764
Score = 326 bits (836), Expect = 2e-86
Identities = 200/642 (31%), Positives = 313/642 (48%), Gaps = 21/642 (3%)
Frame = -2
Query: 2755 AVKSFFREAIIPKGANASFIALIPKDKNASKLSQYRPICMSNFLIKIFSKILQIRLNNFI 2576
AV+ FF+ ++P+G N + I LIPK + L +RPI + N + K+ SK L RL +
Sbjct: 601 AVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRLRPIL 660
Query: 2575 EVLVSKEQSGFIKGREPQTSIGFASEMMNAL--DKKVYGGSFALKVDISQAYDTLSWEFL 2402
+ LVS EQS F++GR + A E +A+ +KK + A K+D+S+AYD + W FL
Sbjct: 661 DDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDRVDWRFL 720
Query: 2401 VVVLERFGFAEKWIKMVMALLKTARLSVLLNGGPVGYIPVGRGLRQGDPLSPLLFALAED 2222
+ + + GFA +W+ +M + + R V NG + RGLRQGDPL P LF D
Sbjct: 721 EMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLFVAD 780
Query: 2221 TLSQGLNKLREIRETMPLTSAKGVSAPTHLLYADDIIIFSRGDYRSVANIAELLERYQVS 2042
LS L + P + +HLL+ADD ++F + R + E+L Y +
Sbjct: 781 GLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMG 840
Query: 2041 SGQIINKTKSKMFLGGMAQER-QDHLHHILNIQIGALPEKYLGVPLIAGRITRAVVTPLL 1865
+GQ+IN K + +GG + + + IL ++ ++YLG P GR+ + L
Sbjct: 841 TGQLINPAKCSILMGGASTPAVSEAISEILQVERDRFEDRYLGFPTPEGRMHKGRFQSLQ 900
Query: 1864 DKIRKRIIAWKGKLLSFQGRHVLIQSVLSSIPVYNMGVYKWPSSVIKEAESIFRNFLWSG 1685
KI KR+I W LS G+ VLI++V+ +IPVY MG++K P SVI + + +NF W
Sbjct: 901 AKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDS 960
Query: 1684 NPAIKKCVTVSWDKVCKPKEEGGLGIRRLRELNMALLMKLAWH-VKYKEDDFVVFMRSKY 1508
+K +WD + KPK GGLG R R N ALL + AW + Y + +++KY
Sbjct: 961 MNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKY 1020
Query: 1507 FTRDN--EPIE*YTKSSLWPGIGWALHEVTSRSQWLIGDGNKVDLWRDVWVGEQSIQQAL 1334
F + + S W I + L + W +G+GN + +WRD W+ ++ +
Sbjct: 1021 FPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSRRPI 1080
Query: 1333 QLSTTQLKNCRSKLSS--IIHNGVWNIPPLLVLLQHMGVDT-ENLPVIRQDERDCSVWKE 1163
T NCR K S I +G W++P + ++ + N+ + + E D W
Sbjct: 1081 ----TGKANCRLKWVSDLITEDGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHP 1136
Query: 1162 DLKGNFSVSSAFQAIRR------------KNTTVDWQQQVWNEYVHPRTAGTAWKLCQKC 1019
D G FSV SA++ + N W + +W V + AW++ C
Sbjct: 1137 DKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAW-EMIWKCKVPQKVKIFAWRVASNC 1195
Query: 1018 AATDAAMQCRGLQMASKCYLGCQAEENLQHIIWDCRFAKDLW 893
AT + R L+ + C + + E+ H + C A LW
Sbjct: 1196 LATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLW 1237
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa Japonica Group]
Length = 2367
Score = 326 bits (836), Expect = 2e-86
Identities = 200/642 (31%), Positives = 313/642 (48%), Gaps = 21/642 (3%)
Frame = -2
Query: 2755 AVKSFFREAIIPKGANASFIALIPKDKNASKLSQYRPICMSNFLIKIFSKILQIRLNNFI 2576
AV+ FF+ ++P+G N + I LIPK + L +RPI + N + K+ SK L RL +
Sbjct: 1204 AVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRLRPIL 1263
Query: 2575 EVLVSKEQSGFIKGREPQTSIGFASEMMNAL--DKKVYGGSFALKVDISQAYDTLSWEFL 2402
+ LVS EQS F++GR + A E +A+ +KK + A K+D+S+AYD + W FL
Sbjct: 1264 DDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDRVDWRFL 1323
Query: 2401 VVVLERFGFAEKWIKMVMALLKTARLSVLLNGGPVGYIPVGRGLRQGDPLSPLLFALAED 2222
+ + + GFA +W+ +M + + R V NG + RGLRQGDPL P LF D
Sbjct: 1324 EMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLFVAD 1383
Query: 2221 TLSQGLNKLREIRETMPLTSAKGVSAPTHLLYADDIIIFSRGDYRSVANIAELLERYQVS 2042
LS L + P + +HLL+ADD ++F + R + E+L Y +
Sbjct: 1384 GLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMG 1443
Query: 2041 SGQIINKTKSKMFLGGMAQER-QDHLHHILNIQIGALPEKYLGVPLIAGRITRAVVTPLL 1865
+GQ+IN K + +GG + + + IL ++ ++YLG P GR+ + L
Sbjct: 1444 TGQLINPAKCSILMGGASTPAVSEAISEILQVERDRFEDRYLGFPTPEGRMHKGRFQSLQ 1503
Query: 1864 DKIRKRIIAWKGKLLSFQGRHVLIQSVLSSIPVYNMGVYKWPSSVIKEAESIFRNFLWSG 1685
KI KR+I W LS G+ VLI++V+ +IPVY MG++K P SVI + + +NF W
Sbjct: 1504 AKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDS 1563
Query: 1684 NPAIKKCVTVSWDKVCKPKEEGGLGIRRLRELNMALLMKLAWH-VKYKEDDFVVFMRSKY 1508
+K +WD + KPK GGLG R R N ALL + AW + Y + +++KY
Sbjct: 1564 MNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKY 1623
Query: 1507 FTRDN--EPIE*YTKSSLWPGIGWALHEVTSRSQWLIGDGNKVDLWRDVWVGEQSIQQAL 1334
F + + S W I + L + W +G+GN + +WRD W+ ++ +
Sbjct: 1624 FPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSRRPI 1683
Query: 1333 QLSTTQLKNCRSKLSS--IIHNGVWNIPPLLVLLQHMGVDT-ENLPVIRQDERDCSVWKE 1163
T NCR K S I +G W++P + ++ + N+ + + E D W
Sbjct: 1684 ----TGKANCRLKWVSDLITEDGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHP 1739
Query: 1162 DLKGNFSVSSAFQAIRR------------KNTTVDWQQQVWNEYVHPRTAGTAWKLCQKC 1019
D G FSV SA++ + N W + +W V + AW++ C
Sbjct: 1740 DKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAW-EMIWKCKVPQKVKIFAWRVASNC 1798
Query: 1018 AATDAAMQCRGLQMASKCYLGCQAEENLQHIIWDCRFAKDLW 893
AT + R L+ + C + + E+ H + C A LW
Sbjct: 1799 LATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLW 1840
>emb|CAN70922.1| hypothetical protein VITISV_016266 [Vitis vinifera]
Length = 945
Score = 324 bits (830), Expect = 9e-86
Identities = 221/698 (31%), Positives = 342/698 (48%), Gaps = 26/698 (3%)
Frame = -2
Query: 2749 KSFFREAIIPKGANASFIALIPKDKNASKLSQYRPICMSNFLIKIFSKILQIRLNNFIEV 2570
K F+ K NA+F+ LIPK A L +RPI + L K +K+L RL +
Sbjct: 209 KEFYENGKFVKSLNATFLVLIPKKVGAEDLGDFRPISLVGSLYKWLAKVLANRLKKVVGK 268
Query: 2569 LVSKEQSGFIKGREPQTSIGFASEMMNALDKKVYGGSFALKVDISQAYDTLSWEFLVVVL 2390
++SK Q F++GR+ ++ A+E++++ K + K+DI +AYD + W F++ V+
Sbjct: 269 VISKAQGAFVEGRQILDAVLIANEVIDSTLKN-NESAILCKLDIEKAYDNVDWTFILTVM 327
Query: 2389 ERFGFAEKWIKMVMALLKTARLSVLLNGGPVGYIPVGRGLRQGDPLSPLLFALAEDTLSQ 2210
++ GF EKWI+ + + TA SVL+NG P G+ + LRQGDPLSP LF +A + S
Sbjct: 328 QKMGFGEKWIRWIKWCISTASFSVLVNGTPTGFFQSSKRLRQGDPLSPYLFVIAMEVFSA 387
Query: 2209 GLNKLREIRETMPLTSAKGVSAP----THLLYADDIIIFSRGDYRSVANIAELLERYQVS 2042
L + E + KG S +HLL+ADD ++F + + +++ LL ++ +
Sbjct: 388 FLQRAVE-GGYLSGCRVKGRSEEGALISHLLFADDTLVFCKPSQDHLTHLSWLLMWFEAA 446
Query: 2041 SGQIINKTKSKMFLGGMAQERQDHLHHILNIQIGALPEKYLGVPLIAGRITRAVVTPLLD 1862
SG IN KS++ G E D L ++G+LP YLG+PL A + +V + D
Sbjct: 447 SGLRINLDKSELIPVGRV-ENMDDLAWEFGCKVGSLPSTYLGMPLGASFKSTSVWDGVED 505
Query: 1861 KIRKRIIAWKGKLLSFQGRHVLIQSVLSSIPVYNMGVYKWPSSVIKEAESIFRNFLWSGN 1682
+ RKR+ WK + LS GR LI+S LS++P+Y M + PS V + E I R+FLW G
Sbjct: 506 RFRKRLGMWKRQYLSKGGRTTLIRSTLSNLPIYLMSLLCLPSVVRRRLEKIQRDFLWGGG 565
Query: 1681 PAIKKCVTVSWDKVCKPKEEGGLGIRRLRELNMALLMKLAWH-VKYKEDDFVVFMRSKYF 1505
+K V W+ VC K++GGLG++ L LN ALL K W +E + +R KY
Sbjct: 566 NLERKPHLVRWEVVCLSKKKGGLGVKNLSILNKALLAKWNWRFANEREALWNQVIRGKYG 625
Query: 1504 TR----DNEPIE*YTKSSLWPGIGWALHEVTSRSQWLIGDGNKVDLWRDVWVGE----QS 1349
+ + LW GI V++R +++G+G +V WRD W G+ S
Sbjct: 626 EERGGWSSREVREAHGLGLWKGIRMNWELVSNRLVFIVGNGRRVRFWRDKWCGDSPLCSS 685
Query: 1348 IQQALQLSTTQLKNCRSKLSSIIHNGVWNIPPLLVL------LQHMGVDTENLPVIR--Q 1193
L+ + ++ S+ G P V ++ E L R +
Sbjct: 686 FPSLFALTVDKEESVADVWDSLAEGGWGGWNPCFVRAFNDWEVEEASSFMERLHRSRVIE 745
Query: 1192 DERDCSVWKEDLKGNFSVSSAFQAIRRKNTTVDWQQQVWNEYVHPRTAGTAWKLCQKCAA 1013
D D W E G FSV S + AI + +WN YV P + AW+ A
Sbjct: 746 DVEDRVSWTETKSGKFSVKSLYLAIEAGGSARFPSSLIWNVYVQPNISFFAWEATWGKAL 805
Query: 1012 TDAAMQCRGLQMASKCYLGCQAEENLQHIIWDCRFAKDLWEWVAWQFGFRGF--TNLKEA 839
T +Q RG +A++C+L + EE + H++ C K LW+ + FG ++KE
Sbjct: 806 TLDKVQKRGWALANRCFLCLENEETIDHLLLHCSRTKVLWDLLFTVFGVSWVLPCSIKET 865
Query: 838 ISRCNHRSTI---IVHLWTAAVMEGMVLLWKHRNLIVF 734
+ H S + +W AA + +WK RN + F
Sbjct: 866 LLSW-HGSFVGKKRKKVWRAAPLHIFWTVWKARNCLAF 902