BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008593
         (710 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containi...   185   7e-45
ref|XP_004155660.1| PREDICTED: pentatricopeptide repeat-containi...   182   6e-44
ref|XP_004134964.1| PREDICTED: uncharacterized protein LOC101207...   182   6e-44
ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containi...   181   2e-43
ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containi...   179   6e-43

>ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial-like [Vitis vinifera]
          Length = 382

 Score =  185 bits (470), Expect = 7e-45
 Identities = 89/176 (50%), Positives = 120/176 (68%)
 Frame = +2

Query: 83  EKLFREVSLKLSIEPDIHSYTFVIQAFVELGSFDSAVLMMDEMEKNGVKPDLITFNTLLN 262
           E  F E+  KLS+EPD+ SY  VI    ++GS DSAV M+DEMEK  ++PDLITFNTLLN
Sbjct: 149 EGFFSELPSKLSVEPDLVSYNIVINGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLN 208

Query: 263 GYYSKGQFSDGEFFWARMEESGVVPDIISFNTKLKGLVSGGNISEAVELVEQLGNSEVKP 442
           G Y+ G+F DGE  W RME+  ++PDI S+N KL GLVS   + E + LVE++    +KP
Sbjct: 209 GCYTSGRFLDGEKIWGRMEKKNILPDIRSYNAKLVGLVSEKRMLEGIGLVEEMQTKGIKP 268

Query: 443 NRFTYNVLIKWYCSNGKLDEAKRLYDYMLKNDVVPGYITFEALIPCACEKGDCDLA 610
           + +++N LIK +C++GK+DEA   Y  M +ND +P  +TF  L+P  CEKG  D A
Sbjct: 269 DGYSFNALIKGFCNDGKVDEATNWYGKMRENDCLPDKLTFATLVPLYCEKGSFDQA 324



 Score = 66.6 bits (161), Expect = 5e-09
 Identities = 36/135 (26%), Positives = 68/135 (50%)
 Frame = +2

Query: 110 KLSIEPDIHSYTFVIQAFVELGSFDSAVLMMDEMEKNGVKPDLITFNTLLNGYYSKGQFS 289
           K +I PDI SY   +   V        + +++EM+  G+KPD  +FN L+ G+ + G+  
Sbjct: 228 KKNILPDIRSYNAKLVGLVSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGKVD 287

Query: 290 DGEFFWARMEESGVVPDIISFNTKLKGLVSGGNISEAVELVEQLGNSEVKPNRFTYNVLI 469
           +   ++ +M E+  +PD ++F T +      G+  +A EL +++ N +   +       +
Sbjct: 288 EATNWYGKMRENDCLPDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVDEVLLQNAV 347

Query: 470 KWYCSNGKLDEAKRL 514
                 GK+ EAK+L
Sbjct: 348 DGLVKGGKVVEAKKL 362



 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 39/114 (34%), Positives = 55/114 (48%)
 Frame = +2

Query: 89  LFREVSLKLSIEPDIHSYTFVIQAFVELGSFDSAVLMMDEMEKNGVKPDLITFNTLLNGY 268
           L  E+  K  I+PD +S+  +I+ F   G  D A     +M +N   PD +TF TL+  Y
Sbjct: 257 LVEEMQTK-GIKPDGYSFNALIKGFCNDGKVDEATNWYGKMRENDCLPDKLTFATLVPLY 315

Query: 269 YSKGQFSDGEFFWARMEESGVVPDIISFNTKLKGLVSGGNISEAVELVEQLGNS 430
             KG F         +     + D +     + GLV GG + EA +LV QLGNS
Sbjct: 316 CEKGSFDQAFELCKEIFNRKCLVDEVLLQNAVDGLVKGGKVVEAKKLV-QLGNS 368


>ref|XP_004155660.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial-like [Cucumis sativus]
          Length = 398

 Score =  182 bits (462), Expect = 6e-44
 Identities = 83/174 (47%), Positives = 117/174 (67%)
 Frame = +2

Query: 83  EKLFREVSLKLSIEPDIHSYTFVIQAFVELGSFDSAVLMMDEMEKNGVKPDLITFNTLLN 262
           EK+FREV  +LSIE D+ SY  VI A+ E+  FD A+L  + MEKNG++PDL+TFNTLL 
Sbjct: 164 EKIFREVPQELSIEADVSSYNIVINAYCEMDDFDKAILFFNHMEKNGMEPDLVTFNTLLT 223

Query: 263 GYYSKGQFSDGEFFWARMEESGVVPDIISFNTKLKGLVSGGNISEAVELVEQLGNSEVKP 442
             Y KGQF DGE  WARME   + PD++S+N +L+G+V    I + +EL+ ++   E+KP
Sbjct: 224 ALYRKGQFLDGESMWARMENKNIAPDLVSYNARLRGMVLDKRIQDGIELLAKMEEKEIKP 283

Query: 443 NRFTYNVLIKWYCSNGKLDEAKRLYDYMLKNDVVPGYITFEALIPCACEKGDCD 604
           +   YN LI  +C +G L+EAK+ Y  + +++V P   T+  L+P  CEKGD D
Sbjct: 284 DVHIYNTLITSFCKDGDLEEAKKWYYKLKESEVDPNATTYRTLLPLLCEKGDFD 337


>ref|XP_004134964.1| PREDICTED: uncharacterized protein LOC101207147 [Cucumis sativus]
          Length = 2802

 Score =  182 bits (462), Expect = 6e-44
 Identities = 83/174 (47%), Positives = 117/174 (67%)
 Frame = +2

Query: 83   EKLFREVSLKLSIEPDIHSYTFVIQAFVELGSFDSAVLMMDEMEKNGVKPDLITFNTLLN 262
            EK+FREV  +LSIE D+ SY  VI A+ E+  FD A+L  + MEKNG++PDL+TFNTLL 
Sbjct: 1021 EKIFREVPQELSIEADVSSYNIVINAYCEMDDFDKAILFFNHMEKNGMEPDLVTFNTLLT 1080

Query: 263  GYYSKGQFSDGEFFWARMEESGVVPDIISFNTKLKGLVSGGNISEAVELVEQLGNSEVKP 442
              Y KGQF DGE  WARME   + PD++S+N +L+G+V    I + +EL+ ++   E+KP
Sbjct: 1081 ALYRKGQFLDGESMWARMENKNIAPDLVSYNARLRGMVLDKRIQDGIELLAKMEEKEIKP 1140

Query: 443  NRFTYNVLIKWYCSNGKLDEAKRLYDYMLKNDVVPGYITFEALIPCACEKGDCD 604
            +   YN LI  +C +G L+EAK+ Y  + +++V P   T+  L+P  CEKGD D
Sbjct: 1141 DVHIYNTLITSFCKDGDLEEAKKWYYKLKESEVDPNATTYRTLLPLLCEKGDFD 1194



 Score =  175 bits (444), Expect = 7e-42
 Identities = 79/174 (45%), Positives = 120/174 (68%)
 Frame = +2

Query: 83   EKLFREVSLKLSIEPDIHSYTFVIQAFVELGSFDSAVLMMDEMEKNGVKPDLITFNTLLN 262
            EK+FREV  ++SI+ D+ SY  VI AF E+ + D A+L   +MEKNG++P+L+TFNTLL 
Sbjct: 1401 EKIFREVPQEVSIKADVISYNIVINAFCEMDALDKAILFFHDMEKNGMEPNLVTFNTLLT 1460

Query: 263  GYYSKGQFSDGEFFWARMEESGVVPDIISFNTKLKGLVSGGNISEAVELVEQLGNSEVKP 442
              Y KGQF DGE  WA ME   + PD++S+N +L+G+V    I + +EL+ ++   E+KP
Sbjct: 1461 ALYRKGQFFDGERVWATMENKNIAPDLVSYNARLRGMVLEKRIQDGIELLAKMEEKEIKP 1520

Query: 443  NRFTYNVLIKWYCSNGKLDEAKRLYDYMLKNDVVPGYITFEALIPCACEKGDCD 604
            + ++YN+LIK +C +G L+EAK+ Y  + +++V P   T+  L+P  CE+GD D
Sbjct: 1521 DVYSYNILIKGFCQDGDLEEAKKWYYKLKESEVDPIATTYRILLPLLCEQGDFD 1574



 Score =  170 bits (430), Expect = 3e-40
 Identities = 85/209 (40%), Positives = 128/209 (61%)
 Frame = +2

Query: 83   EKLFREVSLKLSIEPDIHSYTFVIQAFVELGSFDSAVLMMDEMEKNGVKPDLITFNTLLN 262
            E +FREV  ++SIE D+ SY  VI A+ ++G+ D A+L  ++MEKNG +P+L+TFNTLL 
Sbjct: 1818 ETIFREVPQEVSIEADVVSYNIVINAYCKMGALDKAILFFNDMEKNGTEPNLVTFNTLLT 1877

Query: 263  GYYSKGQFSDGEFFWARMEESGVVPDIISFNTKLKGLVSGGNISEAVELVEQLGNSEVKP 442
              YSKGQF DGE  WARME   + PD+IS+N +L+ +V    I + ++L+ ++    +KP
Sbjct: 1878 ALYSKGQFLDGESMWARMENKNIAPDLISYNARLQRMVLEKRIQDGIQLLAEMEEKAIKP 1937

Query: 443  NRFTYNVLIKWYCSNGKLDEAKRLYDYMLKNDVVPGYITFEALIPCACEKGDCDLAXXXX 622
            N  +Y +LI+ +C +G L++AK+ Y  +  N+V P    +  L+P  CEKGD D      
Sbjct: 1938 NVDSYYILIEGFCEDGDLEQAKQWYYKLKDNEVNPNASIYRTLLPLYCEKGDFD---SGL 1994

Query: 623  XXXXXXXXXXXXXXADIVQVVVNGLVKES 709
                          A+ VQ VV+GL++ S
Sbjct: 1995 RLCKESFDNGLVFLAEEVQRVVDGLIEVS 2023


>ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial [Vitis vinifera]
          Length = 383

 Score =  181 bits (458), Expect = 2e-43
 Identities = 89/177 (50%), Positives = 120/177 (67%), Gaps = 1/177 (0%)
 Frame = +2

Query: 83  EKLFREVSLKLSIEPDIHSYTFVIQAFVELGSFDSAVLMMDEMEKNGVKPDLITFNTLLN 262
           E  F E+  KLS+EPD+ SY  VI+   ++GS DSAV M+DEMEK  ++PDLITFNTLLN
Sbjct: 149 EGFFSELPSKLSVEPDLVSYNIVIKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLN 208

Query: 263 GYYSKGQFSDGEFFWARMEESGVVPDIISFNTKLKGLVSG-GNISEAVELVEQLGNSEVK 439
           G Y+ G+F DGE  W RME+  ++PDI S+N KL GLVS    + E + LVE++    +K
Sbjct: 209 GCYTSGRFLDGEKIWGRMEKKNILPDIRSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIK 268

Query: 440 PNRFTYNVLIKWYCSNGKLDEAKRLYDYMLKNDVVPGYITFEALIPCACEKGDCDLA 610
           P+ +++N LIK +C++GK+DEA   Y  M +ND  P  +TF  L+P  CEKG  D A
Sbjct: 269 PDGYSFNALIKGFCNDGKVDEATNWYGKMRENDCSPDKLTFATLVPLYCEKGSFDQA 325



 Score = 62.0 bits (149), Expect = 1e-07
 Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
 Frame = +2

Query: 110 KLSIEPDIHSYTFVIQAFVELGSFDSAVL----MMDEMEKNGVKPDLITFNTLLNGYYSK 277
           K +I PDI SY   +   V L S +  +L    +++EM+  G+KPD  +FN L+ G+ + 
Sbjct: 228 KKNILPDIRSYNAKL---VGLVSSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCND 284

Query: 278 GQFSDGEFFWARMEESGVVPDIISFNTKLKGLVSGGNISEAVELVEQLGNSEVKPNRFTY 457
           G+  +   ++ +M E+   PD ++F T +      G+  +A EL +++ N +   +    
Sbjct: 285 GKVDEATNWYGKMRENDCSPDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVDEVLL 344

Query: 458 NVLIKWYCSNGKLDEAKRL 514
              +      GK+ EAK+L
Sbjct: 345 QNAVDGLVKGGKVVEAKKL 363



 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 39/114 (34%), Positives = 55/114 (48%)
 Frame = +2

Query: 89  LFREVSLKLSIEPDIHSYTFVIQAFVELGSFDSAVLMMDEMEKNGVKPDLITFNTLLNGY 268
           L  E+  K  I+PD +S+  +I+ F   G  D A     +M +N   PD +TF TL+  Y
Sbjct: 258 LVEEMQTK-GIKPDGYSFNALIKGFCNDGKVDEATNWYGKMRENDCSPDKLTFATLVPLY 316

Query: 269 YSKGQFSDGEFFWARMEESGVVPDIISFNTKLKGLVSGGNISEAVELVEQLGNS 430
             KG F         +     + D +     + GLV GG + EA +LV QLGNS
Sbjct: 317 CEKGSFDQAFELCKEIFNRKCLVDEVLLQNAVDGLVKGGKVVEAKKLV-QLGNS 369


>ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13150-like [Vitis vinifera]
          Length = 379

 Score =  179 bits (453), Expect = 6e-43
 Identities = 89/206 (43%), Positives = 133/206 (64%)
 Frame = +2

Query: 92  FREVSLKLSIEPDIHSYTFVIQAFVELGSFDSAVLMMDEMEKNGVKPDLITFNTLLNGYY 271
           F+E+   L + PD+ SY  ++ AF E+GS DSA+ ++DEMEK G++PDLITFNTLLN +Y
Sbjct: 150 FQELPGNLGVVPDVVSYNIIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFY 209

Query: 272 SKGQFSDGEFFWARMEESGVVPDIISFNTKLKGLVSGGNISEAVELVEQLGNSEVKPNRF 451
             G ++DGE  W  M+++ V P++ S+N KL+G++S   +SEAVEL++++  S +KP+ F
Sbjct: 210 QNGSYADGEKIWDLMKKNNVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVF 269

Query: 452 TYNVLIKWYCSNGKLDEAKRLYDYMLKNDVVPGYITFEALIPCACEKGDCDLAXXXXXXX 631
           T N L+K +C+ G L+EAKR Y  + +N++ P   T+  LIP   EKGD D+A       
Sbjct: 270 TLNSLMKGFCNAGNLEEAKRWYSEIARNELPPVRATYMTLIPFLVEKGDFDMATELCKEV 329

Query: 632 XXXXXXXXXXXADIVQVVVNGLVKES 709
                        ++Q V+ GLVKES
Sbjct: 330 CSRRWLIEPA---LLQQVLEGLVKES 352



 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 34/133 (25%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
 Frame = +2

Query: 173 GSFDSAVLMMDEMEKNGVKPDLITFNTLLNGYYSKGQFSDGEFFWARMEES-GVVPDIIS 349
           G F+ A  + DE+ K   +  +++FN LL+   +  +F   + F+  +  + GVVPD++S
Sbjct: 106 GMFEHAHKLFDELPKLNCERTVVSFNALLSVCVNSKKFDKIDGFFQELPGNLGVVPDVVS 165

Query: 350 FNTKLKGLVSGGNISEAVELVEQLGNSEVKPNRFTYNVLIKWYCSNGKLDEAKRLYDYML 529
           +N  +      G++  A+ +++++    ++P+  T+N L+  +  NG   + ++++D M 
Sbjct: 166 YNIIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMK 225

Query: 530 KNDVVPGYITFEA 568
           KN+V P   ++ A
Sbjct: 226 KNNVAPNVRSYNA 238