BLASTX nr result
ID: Coptis24_contig00008549
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00008549
(1844 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269152.1| PREDICTED: zinc finger CCCH domain-containin... 656 0.0
ref|XP_002315096.1| predicted protein [Populus trichocarpa] gi|2... 614 e-173
ref|XP_002528658.1| conserved hypothetical protein [Ricinus comm... 606 e-171
ref|XP_004148293.1| PREDICTED: zinc finger CCCH domain-containin... 596 e-168
ref|XP_003545729.1| PREDICTED: zinc finger CCCH domain-containin... 560 e-157
>ref|XP_002269152.1| PREDICTED: zinc finger CCCH domain-containing protein 37 [Vitis
vinifera] gi|297736083|emb|CBI24121.3| unnamed protein
product [Vitis vinifera]
Length = 535
Score = 656 bits (1693), Expect = 0.0
Identities = 313/434 (72%), Positives = 355/434 (81%), Gaps = 5/434 (1%)
Frame = -2
Query: 1618 DVSASAGGYDSVLAGIKRQTEAFYHQSVLGNHNSLGQTEALFSTNTLAKRPRFESATNLP 1439
DV AS D ++AG+KR +EA YH SVLG HN++GQ+EA FSTN+LAKRPRFESA+NLP
Sbjct: 101 DVGASV---DPLVAGLKRSSEALYHPSVLGAHNTIGQSEAWFSTNSLAKRPRFESASNLP 157
Query: 1438 IYPQRPGAKDCAHYMLTRTCKFADSCKFDHPIWVPDGGIPDWKEVPLVASSEALPERPGE 1259
IYPQRPG KDCAHYMLTRTCKF DSCKFDHPIWVP+GGIPDWKEVP+VA++E LP+RPGE
Sbjct: 158 IYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPIVAANEFLPQRPGE 217
Query: 1258 PDCPYFLKTQKCKFGFKCKFNHPKDKIESSNALAPVDASVLPERPSEPPCSFYMKTGKCK 1079
PDCPYF+KTQKCKFG KCKFNHPKD+I S A D VLPERPSE PC+FY+KTGKCK
Sbjct: 218 PDCPYFMKTQKCKFGHKCKFNHPKDQIISLGAPENTDVFVLPERPSELPCAFYVKTGKCK 277
Query: 1078 FGATCKFHHPKDIQIPPSIQENGNGVENLSAAVKVESAET-----GDTKSFKPFVPSTPA 914
FGATCKFHHPKDIQI + + N +G E AET G T K V TPA
Sbjct: 278 FGATCKFHHPKDIQIASTGKNNADG----------EQAETGAKGAGTTGDVKLPVSVTPA 327
Query: 913 LLHNSKGLPVRLGEVDCPFYLKTGSCKYGATCRYNHPDRSVINPPVATSLSNAVINSPAA 734
L+HNSKGLP+RLGEVDCPFYLKTGSCKYGATCRYNHPDR+ INPP A ++ +A++ SPAA
Sbjct: 328 LVHNSKGLPMRLGEVDCPFYLKTGSCKYGATCRYNHPDRNAINPP-AAAIGHAIVASPAA 386
Query: 733 SLNFGVINPAATILPSIDPRLAQTTLGVNPPFYPQRPGQMECDFYMKTGECKFGESCRFH 554
+LN GV+NP +IL IDPRL+Q T+GV P YPQRPGQMECDFYMKTGECKFGE C+FH
Sbjct: 387 NLNVGVVNPVTSILHPIDPRLSQ-TMGVGPTIYPQRPGQMECDFYMKTGECKFGERCKFH 445
Query: 553 HPVDRSAPTPSMTKQALQQNVKLTLAGFPRREGTIICPFYLKTGTCKYGVTCRFDHPPPG 374
HP+DRSAPT + LQQN++LTLAGFPRREGTIICPFYLKTGTCKYGVTC+FDHPPPG
Sbjct: 446 HPIDRSAPTAT----KLQQNIRLTLAGFPRREGTIICPFYLKTGTCKYGVTCKFDHPPPG 501
Query: 373 EAIAMATVQGTAGS 332
E +AMAT QG + S
Sbjct: 502 EVMAMATSQGASTS 515
Score = 147 bits (370), Expect = 1e-32
Identities = 96/299 (32%), Positives = 133/299 (44%), Gaps = 28/299 (9%)
Frame = -2
Query: 1141 VLPERPSEPPCSFYMKTGKCKFGATCKFHHPKDIQIPPSIQENGNGVENLSAAVKVESAE 962
+ P+RP E C+ YM T CKFG +CKF HP I +P
Sbjct: 158 IYPQRPGEKDCAHYMLTRTCKFGDSCKFDHP--IWVPE---------------------- 193
Query: 961 TGDTKSFKPFVPSTPALLHNSKGLPVRLGEVDCPFYLKTGSCKYGATCRYNHPDRSVINP 782
G +K VP A ++ LP R GE DCP+++KT CK+G C++NHP +I+
Sbjct: 194 -GGIPDWKE-VPIVAA----NEFLPQRPGEPDCPYFMKTQKCKFGHKCKFNHPKDQIIS- 246
Query: 781 PVATSLSNAVINSPAASLNFGVINPAATILPSIDPRLAQTTLGVNPPFYPQRPGQMECDF 602
+ +P N +LP +RP ++ C F
Sbjct: 247 ----------LGAPE--------NTDVFVLP-------------------ERPSELPCAF 269
Query: 601 YMKTGECKFGESCRFHHPVDRSAPTPSMTKQALQQ------------NVKLTLA------ 476
Y+KTG+CKFG +C+FHHP D + +Q +VKL ++
Sbjct: 270 YVKTGKCKFGATCKFHHPKDIQIASTGKNNADGEQAETGAKGAGTTGDVKLPVSVTPALV 329
Query: 475 ----GFPRREGTIICPFYLKTGTCKYGVTCRFDHP------PPGEAIAMATVQGTAGSV 329
G P R G + CPFYLKTG+CKYG TCR++HP PP AI A V A ++
Sbjct: 330 HNSKGLPMRLGEVDCPFYLKTGSCKYGATCRYNHPDRNAINPPAAAIGHAIVASPAANL 388
>ref|XP_002315096.1| predicted protein [Populus trichocarpa] gi|222864136|gb|EEF01267.1|
predicted protein [Populus trichocarpa]
Length = 532
Score = 614 bits (1583), Expect = e-173
Identities = 294/461 (63%), Positives = 349/461 (75%), Gaps = 8/461 (1%)
Frame = -2
Query: 1711 LYNNQADPAFRYN---DIIRYGGAMPPP--PSWSTPDVSASAGGYDSVLAGIKRQTEAFY 1547
+Y Q+D A RY+ I A P SW+ P +S++ G+KR E Y
Sbjct: 69 MYLKQSDTALRYSVDRGIASASAAATSPHFSSWTPPPGVDVPPAVESLVPGLKRTPEVLY 128
Query: 1546 HQSVLGNHNSLGQTEALFSTNTLAKRPRFESATNLPIYPQRPGAKDCAHYMLTRTCKFAD 1367
H ++LG H+++GQ+E +STN+LAKR RFE+ ++ PIYPQRPG KDCAHYMLTRTCKF D
Sbjct: 129 HPTLLGAHSTIGQSEDWYSTNSLAKRVRFETTSHFPIYPQRPGEKDCAHYMLTRTCKFGD 188
Query: 1366 SCKFDHPIWVPDGGIPDWKEVPLVASSEALPERPGEPDCPYFLKTQKCKFGFKCKFNHPK 1187
+CKFDHP+WVP+GGIPDWKEVPL+A+SE PERPGEPDCPYFLKTQ+CK+G CKFNHPK
Sbjct: 189 TCKFDHPVWVPEGGIPDWKEVPLIATSETFPERPGEPDCPYFLKTQRCKYGLNCKFNHPK 248
Query: 1186 DKI---ESSNALAPVDASVLPERPSEPPCSFYMKTGKCKFGATCKFHHPKDIQIPPSIQE 1016
+K+ +S N+ S LPERPSEPPC+FYMKTGKCKFGA+CKFHHPKDIQIP S
Sbjct: 249 EKLSLGDSENS----SVSALPERPSEPPCAFYMKTGKCKFGASCKFHHPKDIQIPLSGLG 304
Query: 1015 NGNGVENLSAAVKVESAETGDTKSFKPFVPSTPALLHNSKGLPVRLGEVDCPFYLKTGSC 836
N NGV+ + VK E TGD + P TPAL HNSKGLP+RLGEVDCPFYLKTGSC
Sbjct: 305 NDNGVQT-DSVVKNEGI-TGDVDVI--YSPVTPALHHNSKGLPIRLGEVDCPFYLKTGSC 360
Query: 835 KYGATCRYNHPDRSVINPPVATSLSNAVINSPAASLNFGVINPAATILPSIDPRLAQTTL 656
KYGATCRYNHP+R+ INPP A ++ + ++ A+LNFGV NPAA+I +IDPRL+ L
Sbjct: 361 KYGATCRYNHPERTAINPP-AAAIGHPIVAPSLANLNFGVFNPAASIYQTIDPRLSM--L 417
Query: 655 GVNPPFYPQRPGQMECDFYMKTGECKFGESCRFHHPVDRSAPTPSMTKQALQQNVKLTLA 476
GV P FYPQRPGQ ECDFYMKTGECKFGE C+FHHP+DRSAPT KQ QQ VKLTLA
Sbjct: 418 GVGPTFYPQRPGQTECDFYMKTGECKFGERCKFHHPIDRSAPT---EKQIQQQTVKLTLA 474
Query: 475 GFPRREGTIICPFYLKTGTCKYGVTCRFDHPPPGEAIAMAT 353
G PRREG + CP+Y+KTG CKYG TC+FDHPPPGE +A+AT
Sbjct: 475 GLPRREGAVHCPYYMKTGACKYGATCKFDHPPPGEVMAVAT 515
>ref|XP_002528658.1| conserved hypothetical protein [Ricinus communis]
gi|223531909|gb|EEF33724.1| conserved hypothetical
protein [Ricinus communis]
Length = 500
Score = 606 bits (1562), Expect = e-171
Identities = 288/442 (65%), Positives = 339/442 (76%)
Frame = -2
Query: 1657 GGAMPPPPSWSTPDVSASAGGYDSVLAGIKRQTEAFYHQSVLGNHNSLGQTEALFSTNTL 1478
G PPP P S +LAG+KR +E YH +V+G HN++GQTEA +STN L
Sbjct: 57 GAPWTPPPGVDVPPASIEP----HLLAGLKRSSEVLYHPTVMGAHNTIGQTEAWYSTNYL 112
Query: 1477 AKRPRFESATNLPIYPQRPGAKDCAHYMLTRTCKFADSCKFDHPIWVPDGGIPDWKEVPL 1298
KR RFESA+N IYPQRPG KDCAHYMLTRTCKF DSCKFDHP+WVP+GGIP+WKEVPL
Sbjct: 113 TKRSRFESASNYSIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGGIPNWKEVPL 172
Query: 1297 VASSEALPERPGEPDCPYFLKTQKCKFGFKCKFNHPKDKIESSNALAPVDASVLPERPSE 1118
A++E LPERPGEPDCPYFLKTQ+CK+G KCKFNHPKD++ ++ + D LPERPSE
Sbjct: 173 AATTEPLPERPGEPDCPYFLKTQRCKYGSKCKFNHPKDELALGSSQSN-DVFALPERPSE 231
Query: 1117 PPCSFYMKTGKCKFGATCKFHHPKDIQIPPSIQENGNGVENLSAAVKVESAETGDTKSFK 938
P C+FY KTG+CKFGATCKFHHPKDIQI QEN N ++N +AA + TGD + K
Sbjct: 232 PICAFYAKTGRCKFGATCKFHHPKDIQIALG-QENCNIMQNEAAA--MTHGTTGDVNAVK 288
Query: 937 PFVPSTPALLHNSKGLPVRLGEVDCPFYLKTGSCKYGATCRYNHPDRSVINPPVATSLSN 758
+ ALLHNSKGLP+R GEVDCPFYLKTGSCKYGATCRYNHPDR+ INPP A ++ +
Sbjct: 289 ACISFNQALLHNSKGLPIRPGEVDCPFYLKTGSCKYGATCRYNHPDRNAINPP-AAAIGH 347
Query: 757 AVINSPAASLNFGVINPAATILPSIDPRLAQTTLGVNPPFYPQRPGQMECDFYMKTGECK 578
++ SPAA+LN G INPAA+I +I P + LGV P YPQRPG ECD+YMKTGECK
Sbjct: 348 PLLASPAANLNLGDINPAASIYQAIYPSFSSPMLGVGPTIYPQRPGHAECDYYMKTGECK 407
Query: 577 FGESCRFHHPVDRSAPTPSMTKQALQQNVKLTLAGFPRREGTIICPFYLKTGTCKYGVTC 398
FGE CRFHHP+DRSAPT + QA QQ VKLTLAG PRREG + CP+Y+KTGTCKYG TC
Sbjct: 408 FGERCRFHHPIDRSAPTAT---QAQQQAVKLTLAGLPRREGAVHCPYYMKTGTCKYGATC 464
Query: 397 RFDHPPPGEAIAMATVQGTAGS 332
+FDHPPPGE +A+A+ QGT+ S
Sbjct: 465 KFDHPPPGEVMAIAS-QGTSTS 485
>ref|XP_004148293.1| PREDICTED: zinc finger CCCH domain-containing protein 37-like
[Cucumis sativus]
Length = 527
Score = 596 bits (1537), Expect = e-168
Identities = 286/460 (62%), Positives = 344/460 (74%), Gaps = 1/460 (0%)
Frame = -2
Query: 1711 LYNNQAD-PAFRYNDIIRYGGAMPPPPSWSTPDVSASAGGYDSVLAGIKRQTEAFYHQSV 1535
+Y+ Q + P DI+ + SW V+A+ DSV++GIKR ++ Y Q+V
Sbjct: 68 MYSTQKEGPMLSSADIVPRTSHLVSQFSWPGSHVAAAL---DSVVSGIKRSSDVLYDQTV 124
Query: 1534 LGNHNSLGQTEALFSTNTLAKRPRFESATNLPIYPQRPGAKDCAHYMLTRTCKFADSCKF 1355
LG++N+LGQ+EA +++N+LAKRPRFES +NLP+YPQRPG KDCAHYMLTRTCKF DSCKF
Sbjct: 125 LGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKFGDSCKF 184
Query: 1354 DHPIWVPDGGIPDWKEVPLVASSEALPERPGEPDCPYFLKTQKCKFGFKCKFNHPKDKIE 1175
DHPIWVP+GGIPDWKEVP +A+SE LPER G+PDCPYFLKTQ+CKFG +CKFNHPKD+ +
Sbjct: 185 DHPIWVPEGGIPDWKEVPQIANSEDLPERLGDPDCPYFLKTQRCKFGSRCKFNHPKDRSD 244
Query: 1174 SSNALAPVDASVLPERPSEPPCSFYMKTGKCKFGATCKFHHPKDIQIPPSIQENGNGVEN 995
S A DAS LPERPSEP C+FY+KTG CKFG CKFHHPKDIQI S +E GN +
Sbjct: 245 SVGA-EKSDASSLPERPSEPLCAFYVKTGNCKFGINCKFHHPKDIQI-LSGEEYGNSEQT 302
Query: 994 LSAAVKVESAETGDTKSFKPFVPSTPALLHNSKGLPVRLGEVDCPFYLKTGSCKYGATCR 815
L VK E GD K KP + +PA++HNSKGLP+R GEVDCPFYLKTGSCKYG TCR
Sbjct: 303 L--MVKTEE-RAGDFKLVKPPISLSPAIMHNSKGLPIRPGEVDCPFYLKTGSCKYGTTCR 359
Query: 814 YNHPDRSVINPPVATSLSNAVINSPAASLNFGVINPAATILPSIDPRLAQTTLGVNPPFY 635
YNHPDR+ INP + A++++ A++N G +NP+ I ++DPRL Q LG Y
Sbjct: 360 YNHPDRNAINPSTPAMVHPAMVST--ANMNTGFVNPSNAIYQAVDPRLIQPLLGSGSSIY 417
Query: 634 PQRPGQMECDFYMKTGECKFGESCRFHHPVDRSAPTPSMTKQALQQNVKLTLAGFPRREG 455
PQRPGQ+ECDFYMKTG+CKFGE C+FHHP+DRSAP KQ NVKLTLAG PRRE
Sbjct: 418 PQRPGQIECDFYMKTGDCKFGERCKFHHPIDRSAP-----KQGALHNVKLTLAGLPRREE 472
Query: 454 TIICPFYLKTGTCKYGVTCRFDHPPPGEAIAMATVQGTAG 335
IICP+YLKTGTCKYG TC+FDHPPPGE + MA VQ G
Sbjct: 473 AIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPG 512
>ref|XP_003545729.1| PREDICTED: zinc finger CCCH domain-containing protein 37-like
[Glycine max]
Length = 507
Score = 560 bits (1442), Expect = e-157
Identities = 261/414 (63%), Positives = 320/414 (77%)
Frame = -2
Query: 1573 IKRQTEAFYHQSVLGNHNSLGQTEALFSTNTLAKRPRFESATNLPIYPQRPGAKDCAHYM 1394
+KR +EA YH ++LG ++GQ+EA +STN LAKRPR+ESA+N+ IYPQRPG KDCAHYM
Sbjct: 99 LKRSSEALYHPTILG---TIGQSEAWYSTNPLAKRPRYESASNMTIYPQRPGEKDCAHYM 155
Query: 1393 LTRTCKFADSCKFDHPIWVPDGGIPDWKEVPLVASSEALPERPGEPDCPYFLKTQKCKFG 1214
LTRTCKF DSCKFDHP+WVP+GGIPDWKEVP V +SE PERPGEPDCPYFLKTQ+CKFG
Sbjct: 156 LTRTCKFGDSCKFDHPVWVPEGGIPDWKEVPNVVTSETPPERPGEPDCPYFLKTQRCKFG 215
Query: 1213 FKCKFNHPKDKIESSNALAPVDASVLPERPSEPPCSFYMKTGKCKFGATCKFHHPKDIQI 1034
KCKFNHPK E+++ +S LPERPSEPPC+FYMKTGKC++G CKFHHPKDIQI
Sbjct: 216 SKCKFNHPKVSSENADV-----SSGLPERPSEPPCAFYMKTGKCRYGTACKFHHPKDIQI 270
Query: 1033 PPSIQENGNGVENLSAAVKVESAETGDTKSFKPFVPSTPALLHNSKGLPVRLGEVDCPFY 854
S + N + + ++ TGDT+ K + + L NSKGLPVRLGEVDCPFY
Sbjct: 271 QLSDDLSQNVAQTQTNSMM--GGATGDTQPIKSLISPS---LQNSKGLPVRLGEVDCPFY 325
Query: 853 LKTGSCKYGATCRYNHPDRSVINPPVATSLSNAVINSPAASLNFGVINPAATILPSIDPR 674
+KTGSCKYG +CRYNHPDR+ INPP+A L +++ S AA+LN G++NPA + + +PR
Sbjct: 326 MKTGSCKYGVSCRYNHPDRNAINPPIA-GLGASILPSSAANLNIGLLNPAVSAYQAFEPR 384
Query: 673 LAQTTLGVNPPFYPQRPGQMECDFYMKTGECKFGESCRFHHPVDRSAPTPSMTKQALQQN 494
L+ +G+ YPQRPGQ+ECDFYMKTG CKFGE C++HHP+DRSA S++KQA
Sbjct: 385 LSNPMVGIAETIYPQRPGQIECDFYMKTGVCKFGERCKYHHPIDRSA--LSLSKQA---T 439
Query: 493 VKLTLAGFPRREGTIICPFYLKTGTCKYGVTCRFDHPPPGEAIAMATVQGTAGS 332
VKLT AG PRREG +ICP+YLKTGTCK+G TC+FDHPPPGE + MA QGT+ +
Sbjct: 440 VKLTPAGLPRREGDVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTSAN 493
Score = 105 bits (262), Expect = 4e-20
Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 35/212 (16%)
Frame = -2
Query: 1468 PRFESATNLPIYPQRPGAKDCAHYMLTRTCKFADSCKFDHP------------------- 1346
P +++ LP+ R G DC YM T +CK+ SC+++HP
Sbjct: 305 PSLQNSKGLPV---RLGEVDCPFYMKTGSCKYGVSCRYNHPDRNAINPPIAGLGASILPS 361
Query: 1345 ------IWVPDGGIPDWKEV------PLVASSEAL-PERPGEPDCPYFLKTQKCKFGFKC 1205
I + + + ++ P+V +E + P+RPG+ +C +++KT CKFG +C
Sbjct: 362 SAANLNIGLLNPAVSAYQAFEPRLSNPMVGIAETIYPQRPGQIECDFYMKTGVCKFGERC 421
Query: 1204 KFNHPKDKIE---SSNALAPVDASVLPERPSEPPCSFYMKTGKCKFGATCKFHHPKDIQI 1034
K++HP D+ S A + + LP R + C +Y+KTG CKFGATCKF HP ++
Sbjct: 422 KYHHPIDRSALSLSKQATVKLTPAGLPRREGDVICPYYLKTGTCKFGATCKFDHPPPGEV 481
Query: 1033 PPSIQENGNGVENLSAAVKVESAETGDTKSFK 938
+ G E AE GDT + +
Sbjct: 482 MEMAKSQGTSANG-------EEAE-GDTSALE 505