BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008524
         (1822 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278441.2| PREDICTED: nuclear transcription factor Y su...   187   8e-45
emb|CBI27842.3| unnamed protein product [Vitis vinifera]              174   9e-41
ref|XP_002308270.1| predicted protein [Populus trichocarpa] gi|2...   161   5e-37
ref|XP_003597551.1| Nuclear transcription factor Y subunit A-3 [...   156   2e-35
ref|XP_003597550.1| Nuclear transcription factor Y subunit A-3 [...   152   3e-34

>ref|XP_002278441.2| PREDICTED: nuclear transcription factor Y subunit A-3-like [Vitis
            vinifera]
          Length = 350

 Score =  187 bits (475), Expect = 8e-45
 Identities = 126/332 (37%), Positives = 160/332 (48%), Gaps = 7/332 (2%)
 Frame = -3

Query: 1322 RMQSFLKKESVQSSVHSSVPGVVNCSSWWASTESQVPHXXXXXXXXXXXXXSPNTYHNVK 1143
            R+ +  K+   QSSVHS     VNC +WW S E Q+P               P  Y N+K
Sbjct: 4    RIGNLPKRSFDQSSVHSMPHFTVNCQAWWNSNEQQLPESFSKNLSLKVESP-PQLYQNMK 62

Query: 1142 XXXXXXXXXXXXXGKS----HHEMATM-RATPDGNCNSAHSDYNKSYGTQVEGQIQT--V 984
                          +S    H E++ + R      C S+ S + +S   +VEGQ Q   V
Sbjct: 63   QLGLQLQDQDSSSSQSTGQSHQEVSAIGRTNSQDQCISSESVHGESCEKRVEGQSQMKPV 122

Query: 983  FSPGTSNLPFLPPQLDYSQSMVHMXXXXXXXXXXXXXXAIVPQFFQMNPQFVGMAPARVP 804
            F     ++ F P Q+DY  S+ H+              A  P    + PQ VG+AP RVP
Sbjct: 123  FFMANPDVVFNPSQVDYGHSVTHVAYPYADPYHGGLVAAYGPHAV-IQPQLVGIAPTRVP 181

Query: 803  LPPDFGEDEPIYVNSKQYRGILRRRQSRAKLEARNKLIKDRKPYLHESRHLHALNRARGC 624
            LP D  ED PI+VN+KQY GILRRRQSRAK+EA+NKL+K RKPYLHESRHLHALNR RG 
Sbjct: 182  LPFDIAEDGPIFVNAKQYHGILRRRQSRAKMEAQNKLVKARKPYLHESRHLHALNRVRGS 241

Query: 623  GGRFLNTKLEQSKTPFTNDGENASSESSLXXXXXXXXXXXXXXXXXGNMESYITXXXXXX 444
            GGRFL+TK  Q     +N G ++ S S                   G   +  T      
Sbjct: 242  GGRFLSTKKLQEPDSTSNAGCHSVSGSGHFHQKGDTTEYEVHQSDTGKFVASTTSSSDVT 301

Query: 443  XXXDKDNMHPPSNPRLSGYHPPMGTNIQDGGG 348
               + D +      R SG  P MG  +Q GGG
Sbjct: 302  SVSNSDVLFRQPEHRFSGMSPHMGGAMQGGGG 333


>emb|CBI27842.3| unnamed protein product [Vitis vinifera]
          Length = 310

 Score =  174 bits (440), Expect = 9e-41
 Identities = 116/310 (37%), Positives = 147/310 (47%), Gaps = 7/310 (2%)
 Frame = -3

Query: 1256 VNCSSWWASTESQVPHXXXXXXXXXXXXXSPNTYHNVKXXXXXXXXXXXXXGKS----HH 1089
            VNC +WW S E Q+P               P  Y N+K              +S    H 
Sbjct: 6    VNCQAWWNSNEQQLPESFSKNLSLKVESP-PQLYQNMKQLGLQLQDQDSSSSQSTGQSHQ 64

Query: 1088 EMATM-RATPDGNCNSAHSDYNKSYGTQVEGQIQT--VFSPGTSNLPFLPPQLDYSQSMV 918
            E++ + R      C S+ S + +S   +VEGQ Q   VF     ++ F P Q+DY  S+ 
Sbjct: 65   EVSAIGRTNSQDQCISSESVHGESCEKRVEGQSQMKPVFFMANPDVVFNPSQVDYGHSVT 124

Query: 917  HMXXXXXXXXXXXXXXAIVPQFFQMNPQFVGMAPARVPLPPDFGEDEPIYVNSKQYRGIL 738
            H+              A  P    + PQ VG+AP RVPLP D  ED PI+VN+KQY GIL
Sbjct: 125  HVAYPYADPYHGGLVAAYGPHAV-IQPQLVGIAPTRVPLPFDIAEDGPIFVNAKQYHGIL 183

Query: 737  RRRQSRAKLEARNKLIKDRKPYLHESRHLHALNRARGCGGRFLNTKLEQSKTPFTNDGEN 558
            RRRQSRAK+EA+NKL+K RKPYLHESRHLHALNR RG GGRFL+TK  Q     +N G +
Sbjct: 184  RRRQSRAKMEAQNKLVKARKPYLHESRHLHALNRVRGSGGRFLSTKKLQEPDSTSNAGCH 243

Query: 557  ASSESSLXXXXXXXXXXXXXXXXXGNMESYITXXXXXXXXXDKDNMHPPSNPRLSGYHPP 378
            +S                          +  T         + D +      R SG  P 
Sbjct: 244  SSDTGKFV--------------------ASTTSSSDVTSVSNSDVLFRQPEHRFSGMSPH 283

Query: 377  MGTNIQDGGG 348
            MG  +Q GGG
Sbjct: 284  MGGAMQGGGG 293


>ref|XP_002308270.1| predicted protein [Populus trichocarpa] gi|222854246|gb|EEE91793.1|
            predicted protein [Populus trichocarpa]
          Length = 341

 Score =  161 bits (408), Expect = 5e-37
 Identities = 108/262 (41%), Positives = 131/262 (50%), Gaps = 8/262 (3%)
 Frame = -3

Query: 1322 RMQSFLKKESVQSSVHSSVPGVVNCSSWWASTESQVPHXXXXXXXXXXXXXSPNTYHNVK 1143
            R+Q+ LKK   +          V+C SWW S E                  SP  YH  K
Sbjct: 4    RIQNLLKKNFDEPHF------TVSCPSWWNSNEQHFS-PSLSKNINFKVDSSPQPYHEAK 56

Query: 1142 XXXXXXXXXXXXXG----KSHHEMATMRAT-PDGNCNSAHSDYNKSYGTQVEGQIQTVFS 978
                              +SH+EM+ M  T   G C S+ SD  +S G  VEG+++ V  
Sbjct: 57   QLGLNLPDQESSSTLSIGQSHNEMSAMGGTNSQGQCISSESD--ESCGKGVEGKMRPVLL 114

Query: 977  PGTSNLPFLPPQLDYSQSMVHMXXXXXXXXXXXXXXAIVPQFF---QMNPQFVGMAPARV 807
              T +      Q D S SMV                   P  F   QM    VGM   RV
Sbjct: 115  LSTPDGVSNHSQADCSYSMVRTPYPCADPYFGGLFNPYGPHAFIQPQMGSHMVGMTAGRV 174

Query: 806  PLPPDFGEDEPIYVNSKQYRGILRRRQSRAKLEARNKLIKDRKPYLHESRHLHALNRARG 627
            PLP D  +D PIYVN+KQY GILRRRQSRAKLEA+NKL+K+RKPYLHESRH+HALNR RG
Sbjct: 175  PLPLDLADDGPIYVNAKQYHGILRRRQSRAKLEAQNKLVKNRKPYLHESRHIHALNRVRG 234

Query: 626  CGGRFLNTKLEQSKTPFTNDGE 561
             GGRFL+TK  Q   P ++ G+
Sbjct: 235  SGGRFLSTKKLQRSDPTSSHGQ 256


>ref|XP_003597551.1| Nuclear transcription factor Y subunit A-3 [Medicago truncatula]
            gi|355486599|gb|AES67802.1| Nuclear transcription factor
            Y subunit A-3 [Medicago truncatula]
          Length = 331

 Score =  156 bits (395), Expect = 2e-35
 Identities = 101/248 (40%), Positives = 128/248 (51%), Gaps = 1/248 (0%)
 Frame = -3

Query: 1289 QSSVHSSVPGVVNCSSWWASTESQVPHXXXXXXXXXXXXXSPNTYHNVKXXXXXXXXXXX 1110
            + S HS+   +  C SW  S+ESQV                P   HN K           
Sbjct: 7    KDSAHSTPHHIFGCPSWGTSSESQVQQTSMSKGLSFKVEALPQECHNSKALSFQFQEQDS 66

Query: 1109 XXGKSHHEMATMRATPDGNCNSAHSDYNKSYGTQVEGQIQTVFSPGTSNLPFLPPQLDYS 930
               +S     + +  P  +C+S  S + ++    + G +    S G+ NL   PP +D+S
Sbjct: 67   SSTQSTGSSQSGQI-PFQHCSSTGSTFKRTEENNM-GCLIGSSSIGSPNLTVHPPLMDHS 124

Query: 929  QSMVHMXXXXXXXXXXXXXXAIVPQFFQMNPQFVGMAPARVPLPPDFGEDEPIYVNSKQY 750
            QS+ H+              A   Q  Q   Q +  A  R+PLP D  E EPIYVNSKQY
Sbjct: 125  QSLAHVALHYADPGYNGLLSASYGQ--QYKGQLMETASVRIPLPSDMAE-EPIYVNSKQY 181

Query: 749  RGILRRRQSRAKLEARNKLIKDRKPYLHESRHLHALNRARGCGGRFLNT-KLEQSKTPFT 573
              I+RRRQ RAKLEA NKLIKDRKPYLHESRH+HAL RARG GGRFLN  KL++SK    
Sbjct: 182  HAIMRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLNAKKLQESKLDSP 241

Query: 572  NDGENASS 549
            N G+N S+
Sbjct: 242  NHGQNVST 249


>ref|XP_003597550.1| Nuclear transcription factor Y subunit A-3 [Medicago truncatula]
            gi|355486598|gb|AES67801.1| Nuclear transcription factor
            Y subunit A-3 [Medicago truncatula]
          Length = 345

 Score =  152 bits (384), Expect = 3e-34
 Identities = 100/260 (38%), Positives = 130/260 (50%), Gaps = 13/260 (5%)
 Frame = -3

Query: 1289 QSSVHSSVPGVVNCSSWWASTESQVPHXXXXXXXXXXXXXSPNTYHNVKXXXXXXXXXXX 1110
            + S HS+   +  C SW  S+ESQV                P   HN K           
Sbjct: 7    KDSAHSTPHHIFGCPSWGTSSESQVQQTSMSKGLSFKVEALPQECHNSKALSFQFQEQDS 66

Query: 1109 XXGKSHHEMATMRATPDGNCNSAHSDYNKSYGTQVEGQIQTVFSPGTSNLPFLPPQLDYS 930
               +S     + +  P  +C+S  S + ++    + G +    S G+ NL   PP +D+S
Sbjct: 67   SSTQSTGSSQSGQI-PFQHCSSTGSTFKRTEENNM-GCLIGSSSIGSPNLTVHPPLMDHS 124

Query: 929  QSMVHMXXXXXXXXXXXXXXAIVPQFFQ------------MNPQFVGMAPARVPLPPDFG 786
            QS+ H+              A   Q ++            +  Q +  A  R+PLP D  
Sbjct: 125  QSLAHVALHYADPGYNGLLSASYGQQYKAYSIMSSNSDQLLQGQLMETASVRIPLPSDMA 184

Query: 785  EDEPIYVNSKQYRGILRRRQSRAKLEARNKLIKDRKPYLHESRHLHALNRARGCGGRFLN 606
            E EPIYVNSKQY  I+RRRQ RAKLEA NKLIKDRKPYLHESRH+HAL RARG GGRFLN
Sbjct: 185  E-EPIYVNSKQYHAIMRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLN 243

Query: 605  T-KLEQSKTPFTNDGENASS 549
              KL++SK    N G+N S+
Sbjct: 244  AKKLQESKLDSPNHGQNVST 263