BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008492
         (1190 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         224   5e-78
emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]   231   2e-76
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]           199   1e-71
gb|AAK29467.1| polyprotein-like [Solanum chilense]                    199   5e-70
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   196   8e-70

>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  224 bits (570), Expect(2) = 5e-78
 Identities = 126/323 (39%), Positives = 183/323 (56%), Gaps = 1/323 (0%)
 Frame = +2

Query: 2    TLAVSLHGAAKDGIVTMEMATASLLNEETRRXXXXXXXXX-EILVTEKWGRDRYKKPXXX 178
            T  VSL  +A +G+VTME   + +LNEE RR          +ILVT+  GR++ K     
Sbjct: 156  TFRVSLTNSAPNGVVTMEYVKSGILNEEARRRSQDTSTSQSDILVTDDRGRNKQK----- 210

Query: 179  XXXXXXXXXXEARTPKAERQCYYYATKGHFRYECRTLKRDEKNNCVHEDMVQRNENTGRD 358
                      ++R+   + +C+Y   K H +      KR++K +        ++ +TG  
Sbjct: 211  GQRGRDKSRSKSRSRYKDIECHYCGKKSHIKKYSFKWKREKKQD-------NKDGDTGNQ 263

Query: 359  TTALVEDLVGIVSDCGVCCFNISCQDTE*VIDTGASYHVTPHREFFTTCSGGKYGEVKMG 538
               +  DL+    D  +   N++C +T  ++D+GA+YHVTP +EFFT+ + G +GE++MG
Sbjct: 264  VATVRADLLVACDDNVI---NVACHETTWIVDSGAAYHVTPRKEFFTSYTPGDFGELRMG 320

Query: 539  NSGVSKIIDIGNVHVETYAGYTLTLKDVIHVPDIRLSPISVGKLDDDGFINSFGNRVWNL 718
            N G  K+   G V +ET  G  L LK+V H PDIRL+ IS GKLDDDGF   FG+  W +
Sbjct: 321  NDGQVKVTGTGTVCLETSNGTKLVLKNVKHAPDIRLNLISTGKLDDDGFCCFFGDGHWKI 380

Query: 719  SRGSIVAAREKKTCSLYKTQIILCKVEVNAAEEEVFSKLWHKRLCHMGLKGIEVLAKQKA 898
            ++GS+V AR  K+ +LY  Q  +    VN  E+E  S+LWHKRL HM +KGI+ LAK+  
Sbjct: 381  TKGSLVVARGNKSSNLYSLQSSVSDDSVNVVEKECASELWHKRLGHMSVKGIDYLAKKSK 440

Query: 899  LPDIKGTHFNICTHCLVGKQHRV 967
            L  +K    + C HCL GKQ RV
Sbjct: 441  LSGVKEAKLDKCVHCLAGKQRRV 463



 Score = 95.1 bits (235), Expect(2) = 5e-78
 Identities = 42/74 (56%), Positives = 57/74 (77%)
 Frame = +3

Query: 969  FQRFPSHRKDNVLELVHTHLCGPIKVKSHGGASYFVTFIDYASRKIWAYSLKTKDEVFGV 1148
            F   P  RK   L+L+H+ +CGP+KV+S GGASYFVTFID  SRK+W Y+LK K +V GV
Sbjct: 465  FMSHPPTRKSEPLDLIHSDVCGPMKVRSLGGASYFVTFIDDYSRKLWVYTLKHKSDVLGV 524

Query: 1149 FEKFHSIVEKETEK 1190
            F++FH++VE++T K
Sbjct: 525  FKEFHALVERQTGK 538


>emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]
          Length = 1362

 Score =  231 bits (590), Expect(2) = 2e-76
 Identities = 132/325 (40%), Positives = 187/325 (57%), Gaps = 3/325 (0%)
 Frame = +2

Query: 2    TLAVSLHGAAKDGIVTMEMATASLLNEETRRXXXXXXXXXEILVTEKWGRDRYKKPXXXX 181
            T   SL  +A DGI+ M++  + +LNEE RR          +LV  K GR + + P    
Sbjct: 134  TFRTSLSNSAPDGIMNMDLVKSCVLNEEMRRKSQGSSSQSNVLVIXKXGRSKSRGPKNRD 193

Query: 182  XXXXXXXXXEARTPK-AERQCYYYATKGHFRYECRTLKRDEKNNCVHEDMVQRNENTGRD 358
                     +++T K A  +C+Y   KGH +  CR LKRD K   V E   ++N+N G D
Sbjct: 194  RS-------KSKTNKFANVECHYCHLKGHIKKYCRQLKRDMKQGKVKE---KKNDNGGED 243

Query: 359  --TTALVEDLVGIVSDCGVCCFNISCQDTE*VIDTGASYHVTPHREFFTTCSGGKYGEVK 532
                  + D + IV D  V   N +CQ++  VID GAS H TP ++FFT+ + G +G V+
Sbjct: 244  DQVATTISDFL-IVYDSDVV--NFACQESXWVIDXGASIHATPQKDFFTSYTSGDFGSVR 300

Query: 533  MGNSGVSKIIDIGNVHVETYAGYTLTLKDVIHVPDIRLSPISVGKLDDDGFINSFGNRVW 712
            MGN G +K I +G+V +ET  G  LTLK+V H+PDIR++ IS GKLDD+GF N+F +  W
Sbjct: 301  MGNDGSAKAIGMGDVRLETSNGTMLTLKNVKHIPDIRMNLISTGKLDDEGFCNTFRDSQW 360

Query: 713  NLSRGSIVAAREKKTCSLYKTQIILCKVEVNAAEEEVFSKLWHKRLCHMGLKGIEVLAKQ 892
             L+RGS+V A+  K+ SLY  Q  +    +NA +++   +LWH +L HM  KG+ +LAK+
Sbjct: 361  KLTRGSMVIAKGNKSSSLYLMQARVIDSSINAVDDDSTFELWHNKLGHMSEKGLMILAKK 420

Query: 893  KALPDIKGTHFNICTHCLVGKQHRV 967
              L  +K      C HCL GKQ RV
Sbjct: 421  NLLXGMKKGSLKRCAHCLAGKQTRV 445



 Score = 82.4 bits (202), Expect(2) = 2e-76
 Identities = 37/72 (51%), Positives = 55/72 (76%)
 Frame = +3

Query: 969  FQRFPSHRKDNVLELVHTHLCGPIKVKSHGGASYFVTFIDYASRKIWAYSLKTKDEVFGV 1148
            F+     RK  +L+LV++ + GP+K K+ GG+ YFVTFID  SRKIW Y+LKTKD+V  V
Sbjct: 447  FKTLHHTRKPGMLDLVYSDVYGPMKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDV 506

Query: 1149 FEKFHSIVEKET 1184
            F++FH++VE+++
Sbjct: 507  FKQFHALVERQS 518


>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score =  199 bits (506), Expect(2) = 1e-71
 Identities = 119/323 (36%), Positives = 173/323 (53%), Gaps = 1/323 (0%)
 Frame = +2

Query: 2    TLAVSLHGAAKDGIVTMEMATASLLNEETRRXXXXXXXXX-EILVTEKWGRDRYKKPXXX 178
            TL VS+  +A +G+V ME   + +LNEE RR          E+L     GR + K     
Sbjct: 156  TLKVSITNSAPNGVVNMETVKSGILNEEMRRRSQGTSSSQSEVLAVTTRGRSQNKSQSNR 215

Query: 179  XXXXXXXXXXEARTPKAERQCYYYATKGHFRYECRTLKRDEKNNCVHEDMVQRNENTGRD 358
                            A  +C+Y   KGH +  CR  + D+K N      V+  E++  +
Sbjct: 216  DKSRGKSNKF------ANVECHYCKKKGHIKRFCRQFQNDQKKN--KGKKVKPEESSDDE 267

Query: 359  TTALVEDLVGIVSDCGVCCFNISCQDTE*VIDTGASYHVTPHREFFTTCSGGKYGEVKMG 538
            T +  E    +V D  +   N++ Q+   VID+GA+ H TP RE F++ + G +G VKMG
Sbjct: 268  TNSFGE--FNVVYDDDI--INLTTQEMTWVIDSGATIHATPRRELFSSYTLGDFGRVKMG 323

Query: 539  NSGVSKIIDIGNVHVETYAGYTLTLKDVIHVPDIRLSPISVGKLDDDGFINSFGNRVWNL 718
            N+  S ++  G+V +ET  G  L L+DV HVPD+RL+ ISV KLD++G+ N+F N  W L
Sbjct: 324  NANFSTVVGKGDVCLETMNGMKLLLRDVRHVPDMRLNLISVDKLDEEGYCNTFHNGQWKL 383

Query: 719  SRGSIVAAREKKTCSLYKTQIILCKVEVNAAEEEVFSKLWHKRLCHMGLKGIEVLAKQKA 898
            ++GS++ AR  K   LY TQ  + +  +N AE +   KLWH+RL HM  K +  L K+ A
Sbjct: 384  TKGSLMVARGTKQSKLYVTQASISQQVINVAENDSNIKLWHRRLGHMSEKSMARLVKKNA 443

Query: 899  LPDIKGTHFNICTHCLVGKQHRV 967
            LP +       C  CL GKQ+RV
Sbjct: 444  LPGLNQIQLKKCADCLAGKQNRV 466



 Score = 98.2 bits (243), Expect(2) = 1e-71
 Identities = 48/80 (60%), Positives = 61/80 (76%)
 Frame = +3

Query: 951  ESNTGCFQRFPSHRKDNVLELVHTHLCGPIKVKSHGGASYFVTFIDYASRKIWAYSLKTK 1130
            + N   F+RFP  R+ NVL+LVH+ +CGP K KS GGA YFVTFID  SRK W Y+LKTK
Sbjct: 462  KQNRVSFKRFPPSRRQNVLDLVHSDVCGPFK-KSLGGARYFVTFIDDHSRKTWVYTLKTK 520

Query: 1131 DEVFGVFEKFHSIVEKETEK 1190
            D+VF VF++F ++VE+ET K
Sbjct: 521  DQVFQVFKQFLTLVERETGK 540


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score =  199 bits (507), Expect(2) = 5e-70
 Identities = 121/329 (36%), Positives = 184/329 (55%), Gaps = 3/329 (0%)
 Frame = +2

Query: 17   LHGAAKDGIVTMEMATASLLNEETRRXXXXXXXXXEILVTEKWGRDRYKKPXXXXXXXXX 196
            LHG  KD I   ++ +A LLNE+ R+         ++ +TE  GR  Y++          
Sbjct: 165  LHG--KDSIQLKDVTSALLLNEKMRKKPENHG---QVFITESRGRS-YQRSSSNYGRSGA 218

Query: 197  XXXXEARTPKAERQCYYYATKGHFRYECRTLKRDEKNNCVHEDMVQRNENTGRDTTALVE 376
                + R+    R CY     GHF+ +C   KR +      E   Q+N++   +T A+V+
Sbjct: 219  RGKSKVRSKSKARNCYNCDQPGHFKRDCPNPKRGKG-----ESSGQKNDD---NTAAMVQ 270

Query: 377  ---DLVGIVSDCGVCCFNISCQDTE*VIDTGASYHVTPHREFFTTCSGGKYGEVKMGNSG 547
               D+V ++++   C  +++  ++E V+DT ASYH TP R+ F     G YG VKMGN+ 
Sbjct: 271  NNDDVVLLINEEEEC-MHLAGTESEWVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTS 329

Query: 548  VSKIIDIGNVHVETYAGYTLTLKDVIHVPDIRLSPISVGKLDDDGFINSFGNRVWNLSRG 727
             SKI  IG++  +T  G TL LKDV HVPD+R++ IS   LD DG+ N F N+ W L++G
Sbjct: 330  YSKIAGIGDICFKTNVGCTLVLKDVRHVPDLRMNLISGIALDQDGYENYFANQKWRLTKG 389

Query: 728  SIVAAREKKTCSLYKTQIILCKVEVNAAEEEVFSKLWHKRLCHMGLKGIEVLAKQKALPD 907
            ++V A+     +LY+T   +C+ E+NAA EE  + LWHKR+ H   KG+++L+K+  +  
Sbjct: 390  ALVIAKGVARGTLYRTNAEICQGELNAAHEENSADLWHKRMGHTSEKGLQILSKKSLISF 449

Query: 908  IKGTHFNICTHCLVGKQHRVFPKISVSQK 994
             KGT    C + L GKQHRV  + S  +K
Sbjct: 450  TKGTTIKPCNYWLFGKQHRVSFQTSSERK 478



 Score = 92.8 bits (229), Expect(2) = 5e-70
 Identities = 39/67 (58%), Positives = 55/67 (82%)
 Frame = +3

Query: 984  SHRKDNVLELVHTHLCGPIKVKSHGGASYFVTFIDYASRKIWAYSLKTKDEVFGVFEKFH 1163
            S RK N+L+LV++ +CGP++++S GG  YFVTFID ASRK+W Y  + KD+VF VF+KFH
Sbjct: 475  SERKSNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYIFRAKDQVFQVFQKFH 534

Query: 1164 SIVEKET 1184
            ++VE+ET
Sbjct: 535  ALVERET 541


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  196 bits (497), Expect(2) = 8e-70
 Identities = 120/328 (36%), Positives = 184/328 (56%), Gaps = 2/328 (0%)
 Frame = +2

Query: 17   LHGAAKDGIVTMEMATASLLNEETRRXXXXXXXXXEILVTEKWGRDRYKKPXXXXXXXXX 196
            LHG  K  I   ++ +A LLNE+ R+         + L+TE  GR  Y++          
Sbjct: 164  LHG--KTTIELKDVTSALLLNEKMRKKPENQG---QALITEGRGRS-YQRSSNNYGRSGA 217

Query: 197  XXXXEARTPKAERQCYYYATKGHFRYECRTLKRDEKNNCVHEDMVQRNENTGRDTTALVE 376
                + R+    R CY     GHF+ +C   ++ +      E   Q+N++   +T A+V+
Sbjct: 218  RGKSKNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKG-----ETSGQKNDD---NTAAMVQ 269

Query: 377  --DLVGIVSDCGVCCFNISCQDTE*VIDTGASYHVTPHREFFTTCSGGKYGEVKMGNSGV 550
              D V +  +    C ++S  ++E V+DT AS+H TP R+ F     G +G VKMGN+  
Sbjct: 270  NNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSY 329

Query: 551  SKIIDIGNVHVETYAGYTLTLKDVIHVPDIRLSPISVGKLDDDGFINSFGNRVWNLSRGS 730
            SKI  IG++ ++T  G TL LKDV HVPD+R++ IS   LD DG+ + F N+ W L++GS
Sbjct: 330  SKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGS 389

Query: 731  IVAAREKKTCSLYKTQIILCKVEVNAAEEEVFSKLWHKRLCHMGLKGIEVLAKQKALPDI 910
            +V A+     +LY+T   +C+ E+NAA++E+   LWHKR+ HM  KG+++LAK+  +   
Sbjct: 390  LVIAKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYA 449

Query: 911  KGTHFNICTHCLVGKQHRVFPKISVSQK 994
            KGT    C +CL GKQHRV  + S  +K
Sbjct: 450  KGTTVKPCDYCLFGKQHRVSFQTSSERK 477



 Score = 95.9 bits (237), Expect(2) = 8e-70
 Identities = 42/67 (62%), Positives = 57/67 (85%)
 Frame = +3

Query: 984  SHRKDNVLELVHTHLCGPIKVKSHGGASYFVTFIDYASRKIWAYSLKTKDEVFGVFEKFH 1163
            S RK N+L+LV++ +CGP++++S GG  YFVTFID ASRK+W Y LKTKD+VF VF+KFH
Sbjct: 474  SERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFH 533

Query: 1164 SIVEKET 1184
            ++VE+ET
Sbjct: 534  ALVERET 540