BLASTX nr result
ID: Coptis24_contig00008471
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00008471 (1536 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002514929.1| GTP binding protein, putative [Ricinus commu... 587 e-165 ref|XP_004144195.1| PREDICTED: putative ribosome biogenesis GTPa... 586 e-165 ref|XP_002279434.1| PREDICTED: putative ribosome biogenesis GTPa... 580 e-163 ref|XP_003551427.1| PREDICTED: putative ribosome biogenesis GTPa... 566 e-159 ref|XP_003538555.1| PREDICTED: putative ribosome biogenesis GTPa... 563 e-158 >ref|XP_002514929.1| GTP binding protein, putative [Ricinus communis] gi|223545980|gb|EEF47483.1| GTP binding protein, putative [Ricinus communis] Length = 500 Score = 587 bits (1514), Expect = e-165 Identities = 289/378 (76%), Positives = 332/378 (87%), Gaps = 10/378 (2%) Frame = +1 Query: 292 NQAIGMVSSAQANYMRVVVEKAAPTENT-------SSSIVGVELLCVVRAVLKKIKRRVL 450 +QA+G V++AQAN+MRV+++ P+ T S +GVELLCVVRAVLKKI+RRVL Sbjct: 92 SQAVGTVAAAQANFMRVIIQSLPPSSGTFLKSPEEEDSRIGVELLCVVRAVLKKIRRRVL 151 Query: 451 VGDKVLVSSIDWVDKRGMIENVFERSSEILDPPVANVDHLLVLFSFEQPKVESFSLTRFL 630 VGDKV+V SIDWVD+RGMIENVF+RS+EILDPPVANVDHLLVLFS +QPK+E F+LTRFL Sbjct: 152 VGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLVLFSMDQPKIEPFALTRFL 211 Query: 631 VEAESTGIPVTLALNKSELVDEETQVAWKAKLRKWGYQPLFCSVESGVGLDSLAFILREQ 810 VEAESTGIP+TLALNKSELVDEET +AWK++LR WGY+PLFCSVES +GLDSLA+ILREQ Sbjct: 212 VEAESTGIPLTLALNKSELVDEETLIAWKSRLRSWGYEPLFCSVESKLGLDSLAYILREQ 271 Query: 811 TSVIVGPSGVGKSSLINALRGSKHG---PEEDNWLSHIEGSKWFEDQRVGEVSIRSGRGK 981 T+VIVGPSGVGKSSLINALR E DNW + GSKWFE+QRVGEVS RSGRGK Sbjct: 272 TTVIVGPSGVGKSSLINALRNKPRACDVAENDNWFDPMLGSKWFEEQRVGEVSTRSGRGK 331 Query: 982 HTTRHVSLLPLSGGGFLADTPGFNQPSLMRVTKKSLAQMFPEIRKMLSTNDPAKCSFSDC 1161 HTTR+VSLLPLS GG+LADTPGFNQPSL++VTK+SLA+ FPEI+KMLS+ PAKCSF+DC Sbjct: 332 HTTRNVSLLPLSAGGYLADTPGFNQPSLLKVTKQSLAETFPEIQKMLSSGGPAKCSFNDC 391 Query: 1162 LHLGEPGCVVKGDWERYAYYLQLLDEIKIREEFQLRTLGTKRESDVRYKVGDMGVKQAEP 1341 LHLGEPGC+V GDWERY++Y QLLDEI+IREEFQLRT GTK+E DVRYKVGDMGV+QAEP Sbjct: 392 LHLGEPGCIVNGDWERYSFYFQLLDEIRIREEFQLRTYGTKKEGDVRYKVGDMGVQQAEP 451 Query: 1342 RLELKKHRRQSRKRINQS 1395 RLE KKHRRQSRKRINQS Sbjct: 452 RLEPKKHRRQSRKRINQS 469 >ref|XP_004144195.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Cucumis sativus] gi|449489232|ref|XP_004158254.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Cucumis sativus] Length = 504 Score = 586 bits (1511), Expect = e-165 Identities = 294/388 (75%), Positives = 334/388 (86%), Gaps = 20/388 (5%) Frame = +1 Query: 292 NQAIGMVSSAQANYMRVVV---------------EKAAPTENTSS--SIVGVELLCVVRA 420 +QAIG V++AQAN+MRV+V E++ E+ SS S++GVELLCVV+A Sbjct: 88 SQAIGTVAAAQANFMRVIVQTLPSQFSQSPNDDLERSGSLEDDSSKSSMLGVELLCVVKA 147 Query: 421 VLKKIKRRVLVGDKVLVSSIDWVDKRGMIENVFERSSEILDPPVANVDHLLVLFSFEQPK 600 VLKKIKRRVLVGDKV+V SIDWVD+RGMIENVF+RSSEILDPPVANVDHLLVLFS +QP+ Sbjct: 148 VLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHLLVLFSMDQPR 207 Query: 601 VESFSLTRFLVEAESTGIPVTLALNKSELVDEETQVAWKAKLRKWGYQPLFCSVESGVGL 780 +E F+LTRFLVEAESTGIP+TL LNK ELVDEET V+WK++LR WGY PLFCSV++G GL Sbjct: 208 LEPFTLTRFLVEAESTGIPLTLGLNKLELVDEETLVSWKSRLRSWGYDPLFCSVQTGAGL 267 Query: 781 DSLAFILREQTSVIVGPSGVGKSSLINALRGSKHGPEE---DNWLSHIEGSKWFEDQRVG 951 DSLAFILR+QT+VIVGPSGVGKSSLINALR S + DNW I GSKWFE+QRV Sbjct: 268 DSLAFILRDQTTVIVGPSGVGKSSLINALRNSNRATDASDTDNWFDPILGSKWFEEQRVA 327 Query: 952 EVSIRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLMRVTKKSLAQMFPEIRKMLSTN 1131 EVS RSGRGKHTTRHVSLLPLSGGG+LADTPGFNQPSLM++TK+SLAQ FPEI+KML + Sbjct: 328 EVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLMKITKQSLAQAFPEIQKMLHAS 387 Query: 1132 DPAKCSFSDCLHLGEPGCVVKGDWERYAYYLQLLDEIKIREEFQLRTLGTKRESDVRYKV 1311 +PAKCSF+DCLHLGEPGCV+KGDWERY YY QLLDEI+IREEFQLRT GTKRE DVR KV Sbjct: 388 EPAKCSFNDCLHLGEPGCVIKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRIKV 447 Query: 1312 GDMGVKQAEPRLELKKHRRQSRKRINQS 1395 G+MGVKQAEPRLELKKHRRQSRKR+NQS Sbjct: 448 GEMGVKQAEPRLELKKHRRQSRKRVNQS 475 >ref|XP_002279434.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like isoform 3 [Vitis vinifera] Length = 491 Score = 580 bits (1494), Expect = e-163 Identities = 311/461 (67%), Positives = 348/461 (75%), Gaps = 19/461 (4%) Frame = +1 Query: 70 MSISLTSIFRYRLSLSLPILHLKKTSS---TIITSARQDPNPYRKLQXXXXXXXXXXXXX 240 M I+ TSIFRY SL +L +S + Q+P + Sbjct: 1 MPIASTSIFRYSNPSSLLLLRRGAAASFRHLSFVAKHQNPISRKPQNKNLLRAKQTVKHL 60 Query: 241 XXXXXXXXXXXXXXXXXNQAIGMVSSAQANYMRVVVEKAAPTENTSSSI---------VG 393 +A+GMV++AQAN+MRV+VE + + VG Sbjct: 61 SSLSPTLPVNHRPLLSATEAVGMVAAAQANFMRVIVEDSRVEDGDGGGDGDGDGDAVRVG 120 Query: 394 VELLCVVRAVLKKIKRRVLVGDKVLVSSIDWVDKRGMIENVFERSSEILDPPVANVDHLL 573 VELLCVVRAVLKKIKRRVLVGDKVLV SIDWVD+RG+IENVF R SEILDPPVANVDHLL Sbjct: 121 VELLCVVRAVLKKIKRRVLVGDKVLVGSIDWVDRRGVIENVFSRKSEILDPPVANVDHLL 180 Query: 574 VLFSFEQPKVESFSLTRFLVEAESTGIPVTLALNKSELVDEETQVAWKAKLRKWGYQPLF 753 VLF+ EQPK+E +SLTRFLVEAESTGIP+TLALNKSELVDEET+VAWK++LR WGY P+F Sbjct: 181 VLFAMEQPKLEVYSLTRFLVEAESTGIPITLALNKSELVDEETRVAWKSRLRSWGYGPVF 240 Query: 754 CSVESGVGLDSLAFILREQTSVIVGPSGVGKSSLINALRGSKH-----GPEEDNWLSHIE 918 CSVES GLD+LAF LREQT+VIVGPSGVGKSSLINALR S H EE+NW I Sbjct: 241 CSVESKFGLDTLAFSLREQTTVIVGPSGVGKSSLINALR-SNHPLINVSSEENNWFDSIL 299 Query: 919 GSKWFEDQRVGEVSIRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLMRVTKKSLAQM 1098 GSK E+QRVGEVS+RSGRGKHTTRHVSLLPLSGGG+LADTPGFNQPSL++VT +SLAQ Sbjct: 300 GSKLLEEQRVGEVSVRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTTQSLAQT 359 Query: 1099 FPEIRKML--STNDPAKCSFSDCLHLGEPGCVVKGDWERYAYYLQLLDEIKIREEFQLRT 1272 FPEIRK+L S N+P KCSF+DCLHLGEPGCVVKGDWERY YY QLLDEIKIREEFQLRT Sbjct: 360 FPEIRKLLSGSANEPEKCSFNDCLHLGEPGCVVKGDWERYPYYFQLLDEIKIREEFQLRT 419 Query: 1273 LGTKRESDVRYKVGDMGVKQAEPRLELKKHRRQSRKRINQS 1395 LGTKRE DVRYK GDMGVKQAEPRLE KKHRRQSRKR+NQS Sbjct: 420 LGTKREGDVRYKTGDMGVKQAEPRLEPKKHRRQSRKRMNQS 460 >ref|XP_003551427.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Glycine max] Length = 473 Score = 566 bits (1458), Expect = e-159 Identities = 283/369 (76%), Positives = 322/369 (87%), Gaps = 1/369 (0%) Frame = +1 Query: 292 NQAIGMVSSAQANYMRVVVEKAAPTENTSSSIVGVELLCVVRAVLKKIKRRVLVGDKVLV 471 +QAIG+V+++QAN+MRV+V + + S S GVE+LCVVRA+LKKIKRRV+VGDKVLV Sbjct: 79 SQAIGVVAASQANFMRVIVPE---NDEPSGSFRGVEILCVVRALLKKIKRRVMVGDKVLV 135 Query: 472 SSIDWVDKRGMIENVFERSSEILDPPVANVDHLLVLFSFEQPKVESFSLTRFLVEAESTG 651 SIDWVD+RGMIENVF R+SEILDPPVANVD LLVLFS EQPK E F+LTRFLVEAESTG Sbjct: 136 GSIDWVDRRGMIENVFHRTSEILDPPVANVDQLLVLFSLEQPKPEPFTLTRFLVEAESTG 195 Query: 652 IPVTLALNKSELVDEETQVAWKAKLRKWGYQPLFCSVESGVGLDSLAFILREQTSVIVGP 831 IP+TLALNK+ELVD E +WKA+LR WGY+P+FCSVESG GLD L F LR+QT+VIVGP Sbjct: 196 IPLTLALNKTELVDNEIISSWKARLRSWGYEPVFCSVESGHGLDLLGFKLRDQTTVIVGP 255 Query: 832 SGVGKSSLINALRGS-KHGPEEDNWLSHIEGSKWFEDQRVGEVSIRSGRGKHTTRHVSLL 1008 SGVGKSSLINALR + + E +NW + GSKW EDQRVGEVS RSGRGKHTTRHVSLL Sbjct: 256 SGVGKSSLINALRSNPSNAAEGENWFEPVLGSKWLEDQRVGEVSTRSGRGKHTTRHVSLL 315 Query: 1009 PLSGGGFLADTPGFNQPSLMRVTKKSLAQMFPEIRKMLSTNDPAKCSFSDCLHLGEPGCV 1188 PLS GGFLADTPGFNQPSL++VTK+SLAQ FPEIRKMLS ++ KCSF++CLHLGEPGC+ Sbjct: 316 PLSEGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSASEIEKCSFNNCLHLGEPGCI 375 Query: 1189 VKGDWERYAYYLQLLDEIKIREEFQLRTLGTKRESDVRYKVGDMGVKQAEPRLELKKHRR 1368 VKGDWERY+YY QLLDEI+IREEFQLRT GTKRE DVR K+GDMGV+QAEPRLE KKHRR Sbjct: 376 VKGDWERYSYYFQLLDEIRIREEFQLRTFGTKREGDVRLKMGDMGVQQAEPRLEPKKHRR 435 Query: 1369 QSRKRINQS 1395 QSRKRINQS Sbjct: 436 QSRKRINQS 444 >ref|XP_003538555.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Glycine max] Length = 475 Score = 563 bits (1450), Expect = e-158 Identities = 282/369 (76%), Positives = 319/369 (86%), Gaps = 1/369 (0%) Frame = +1 Query: 292 NQAIGMVSSAQANYMRVVVEKAAPTENTSSSIVGVELLCVVRAVLKKIKRRVLVGDKVLV 471 +QAIG+V+++QAN+MRV+V + + S S GVE+LCVVRA+LKKIKRRV+VGDKVLV Sbjct: 83 SQAIGVVAASQANFMRVIVPE---NDEPSGSFRGVEILCVVRALLKKIKRRVMVGDKVLV 139 Query: 472 SSIDWVDKRGMIENVFERSSEILDPPVANVDHLLVLFSFEQPKVESFSLTRFLVEAESTG 651 SIDWVD+RGMIENVF+R+SEILDPPVANVD LLVLFS E PK E F+LTRFLVEAESTG Sbjct: 140 GSIDWVDRRGMIENVFQRTSEILDPPVANVDQLLVLFSLEHPKPEPFTLTRFLVEAESTG 199 Query: 652 IPVTLALNKSELVDEETQVAWKAKLRKWGYQPLFCSVESGVGLDSLAFILREQTSVIVGP 831 IP+ LALNK+ELVD E +WKA+LR WGY+P+FCSVESG GLD L + LR+QT+VIVGP Sbjct: 200 IPLMLALNKTELVDNEIISSWKARLRSWGYEPVFCSVESGHGLDLLGYKLRDQTTVIVGP 259 Query: 832 SGVGKSSLINALRGS-KHGPEEDNWLSHIEGSKWFEDQRVGEVSIRSGRGKHTTRHVSLL 1008 SGVGKSSLINALR + E DNW I GSKW EDQRVGEVS RSGRGKHTTRHVSLL Sbjct: 260 SGVGKSSLINALRSNPSDAAEGDNWFEPILGSKWLEDQRVGEVSTRSGRGKHTTRHVSLL 319 Query: 1009 PLSGGGFLADTPGFNQPSLMRVTKKSLAQMFPEIRKMLSTNDPAKCSFSDCLHLGEPGCV 1188 PLS GGFLADTPGFNQPSL++VTK+SLAQ FPEIRKMLS N+ KCSF++CLHLGEPGC+ Sbjct: 320 PLSEGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCI 379 Query: 1189 VKGDWERYAYYLQLLDEIKIREEFQLRTLGTKRESDVRYKVGDMGVKQAEPRLELKKHRR 1368 VKGDWERY+YY QLLDEI+IREEFQLRT GTKRE DVR K+GDMGV+QAEPRLE KKHRR Sbjct: 380 VKGDWERYSYYFQLLDEIRIREEFQLRTFGTKREGDVRLKMGDMGVQQAEPRLEPKKHRR 439 Query: 1369 QSRKRINQS 1395 QSRK INQS Sbjct: 440 QSRKSINQS 448