BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008394
         (1518 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...   845   0.0  
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...   835   0.0  
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...   834   0.0  
ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II su...   830   0.0  
ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II su...   829   0.0  

>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera] gi|147841183|emb|CAN72948.1| hypothetical
            protein VITISV_033708 [Vitis vinifera]
            gi|302143287|emb|CBI21848.3| unnamed protein product
            [Vitis vinifera]
          Length = 1193

 Score =  845 bits (2183), Expect = 0.0
 Identities = 425/443 (95%), Positives = 431/443 (97%)
 Frame = +3

Query: 189  AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIVIRPESQHNPGRQSDFLETI 368
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI IRPESQHNPGRQSDFLETI
Sbjct: 27   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFLETI 86

Query: 369  YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMKKGHDCEEVT 548
            YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK+++KKGHD EEVT
Sbjct: 87   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDLEEVT 146

Query: 549  EPPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 728
            E  E   KVFIGKVPIMLRSSYCT+YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 147  ETQE-FTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 205

Query: 729  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRAT 908
            KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRAT
Sbjct: 206  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRAT 265

Query: 909  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQLVALD 1088
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSD QMMELLRPSLEEAFVIQNQ VALD
Sbjct: 266  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALD 325

Query: 1089 YIGKRGSTVGVTKEKRIKYAREILQKEMLPHVGVGEYYETKKAYYFGYIIHRLLLCALGR 1268
            YIGKRGSTVGVT+EKRIKYA+EILQKEMLPHVGVGEY ETKKAYYFGYIIHRLLLCALGR
Sbjct: 326  YIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 385

Query: 1269 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYAQKCVDNGKDVNLQFAIKAKT 1448
            RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY QKCVDNGKDVNLQFAIKAKT
Sbjct: 386  RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 445

Query: 1449 ITSGLKYSLATGNWGQANAAGTR 1517
            ITSGLKYSLATGNWGQANAAGTR
Sbjct: 446  ITSGLKYSLATGNWGQANAAGTR 468


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 1194

 Score =  835 bits (2158), Expect = 0.0
 Identities = 421/443 (95%), Positives = 428/443 (96%)
 Frame = +3

Query: 189  AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIVIRPESQHNPGRQSDFLETI 368
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI IRPESQHNPG QSDF ETI
Sbjct: 28   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 87

Query: 369  YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMKKGHDCEEVT 548
            YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK+V+KKGHD EEVT
Sbjct: 88   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 147

Query: 549  EPPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 728
            E  +   KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 148  ETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206

Query: 729  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRAT 908
            KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS+MFVRMLSRTSAKGGSSGQYIRAT
Sbjct: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 266

Query: 909  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQLVALD 1088
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSD QMMELLRPSLEEAFVIQNQ VALD
Sbjct: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALD 326

Query: 1089 YIGKRGSTVGVTKEKRIKYAREILQKEMLPHVGVGEYYETKKAYYFGYIIHRLLLCALGR 1268
            YIGKRG+TVGVTKEKRIKYA+EILQKEMLPHVGVGEY ETKKAYYFGYIIHRLLLCALGR
Sbjct: 327  YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 386

Query: 1269 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYAQKCVDNGKDVNLQFAIKAKT 1448
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+Y QKCVDNGKDVNLQFAIKAKT
Sbjct: 387  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKT 446

Query: 1449 ITSGLKYSLATGNWGQANAAGTR 1517
            ITSGLKYSLATGNWGQANAAGTR
Sbjct: 447  ITSGLKYSLATGNWGQANAAGTR 469


>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score =  834 bits (2154), Expect = 0.0
 Identities = 420/443 (94%), Positives = 427/443 (96%)
 Frame = +3

Query: 189  AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIVIRPESQHNPGRQSDFLETI 368
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI IRPESQHNPG QSDF ETI
Sbjct: 25   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 84

Query: 369  YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMKKGHDCEEVT 548
            YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK+V+KKGHD EEVT
Sbjct: 85   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 144

Query: 549  EPPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 728
            E  +   KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 145  ETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 203

Query: 729  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRAT 908
            KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS+MFVRMLSRTSAKGGSSGQYIRAT
Sbjct: 204  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 263

Query: 909  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQLVALD 1088
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDF+D QMMELLRPSLEEAFVIQNQ VALD
Sbjct: 264  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALD 323

Query: 1089 YIGKRGSTVGVTKEKRIKYAREILQKEMLPHVGVGEYYETKKAYYFGYIIHRLLLCALGR 1268
            YIGKRG+TVGVTKEKRIKYA+EILQKEMLPHVGVGEY ETKKAYYFGYIIHRLLLCALGR
Sbjct: 324  YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 383

Query: 1269 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYAQKCVDNGKDVNLQFAIKAKT 1448
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFAIKAKT
Sbjct: 384  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKT 443

Query: 1449 ITSGLKYSLATGNWGQANAAGTR 1517
            ITSGLKYSLATGNWGQANAAGTR
Sbjct: 444  ITSGLKYSLATGNWGQANAAGTR 466


>ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1193

 Score =  830 bits (2145), Expect = 0.0
 Identities = 418/443 (94%), Positives = 427/443 (96%)
 Frame = +3

Query: 189  AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIVIRPESQHNPGRQSDFLETI 368
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI IRPESQHNPG QSDF ETI
Sbjct: 28   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 87

Query: 369  YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMKKGHDCEEVT 548
            YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+K+V+KKGHD EEVT
Sbjct: 88   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVVKKGHDGEEVT 147

Query: 549  EPPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 728
            E  + + KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 148  ETQD-LTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206

Query: 729  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRAT 908
            KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS+MFVRMLSRTS+KGGSSGQYIRAT
Sbjct: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRAT 266

Query: 909  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQLVALD 1088
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSD  MMELLRPSLEEAFVIQNQ VALD
Sbjct: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTLMMELLRPSLEEAFVIQNQQVALD 326

Query: 1089 YIGKRGSTVGVTKEKRIKYAREILQKEMLPHVGVGEYYETKKAYYFGYIIHRLLLCALGR 1268
            YIGKRG+TVGVTKEKRIKYA+EILQKEMLPHVGVGEY ETKKAYYFGYIIHRLLLCALGR
Sbjct: 327  YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 386

Query: 1269 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYAQKCVDNGKDVNLQFAIKAKT 1448
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFAIKAKT
Sbjct: 387  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKT 446

Query: 1449 ITSGLKYSLATGNWGQANAAGTR 1517
            ITSGLKYSLATGNWGQANAAGTR
Sbjct: 447  ITSGLKYSLATGNWGQANAAGTR 469


>ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1192

 Score =  829 bits (2141), Expect = 0.0
 Identities = 418/443 (94%), Positives = 426/443 (96%)
 Frame = +3

Query: 189  AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIVIRPESQHNPGRQSDFLETI 368
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI IRPESQHNPG QSDF ETI
Sbjct: 28   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 87

Query: 369  YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMKKGHDCEEVT 548
            YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+K+V+KKGHD EEVT
Sbjct: 88   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVT 147

Query: 549  EPPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 728
            E  +   KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 148  EAQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206

Query: 729  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRAT 908
            KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS+MFVRMLSRTS+KGGSSGQYIRAT
Sbjct: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRAT 266

Query: 909  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQLVALD 1088
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDFS  QMMELLRPSLEEAFVIQNQ VALD
Sbjct: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSYTQMMELLRPSLEEAFVIQNQQVALD 326

Query: 1089 YIGKRGSTVGVTKEKRIKYAREILQKEMLPHVGVGEYYETKKAYYFGYIIHRLLLCALGR 1268
            YIGKRG+TVGVTKEKRIKYA+EILQKEMLPHVGVGEY ETKKAYYFGYIIHRLLLCALGR
Sbjct: 327  YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 386

Query: 1269 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYAQKCVDNGKDVNLQFAIKAKT 1448
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFAIKAKT
Sbjct: 387  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKT 446

Query: 1449 ITSGLKYSLATGNWGQANAAGTR 1517
            ITSGLKYSLATGNWGQANAAGTR
Sbjct: 447  ITSGLKYSLATGNWGQANAAGTR 469