BLASTX nr result
ID: Coptis24_contig00008340
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00008340
(2388 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269984.1| PREDICTED: pentatricopeptide repeat-containi... 869 0.0
gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucu... 843 0.0
ref|XP_004144640.1| PREDICTED: pentatricopeptide repeat-containi... 837 0.0
ref|XP_004162287.1| PREDICTED: pentatricopeptide repeat-containi... 837 0.0
ref|XP_002513427.1| pentatricopeptide repeat-containing protein,... 831 0.0
>ref|XP_002269984.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic [Vitis vinifera]
gi|147852271|emb|CAN82234.1| hypothetical protein
VITISV_038804 [Vitis vinifera]
Length = 567
Score = 869 bits (2246), Expect = 0.0
Identities = 420/564 (74%), Positives = 495/564 (87%)
Frame = +3
Query: 189 MAIALLHTMSPLPNPSSTSTKKSCCFFSHIPNLHTPSLNKGFTKILASTHLSIPTKETVF 368
MAI L++ MSP+ +PS + +K C FFS +PNLHT SLNKGF+++LAST ++I K+ VF
Sbjct: 1 MAI-LVNAMSPITSPSPENARKVCGFFSQVPNLHTLSLNKGFSRVLASTQITISPKDNVF 59
Query: 369 TLPNWRNGKNDNKTKDLRLNDAFLYLEYMVGKGHIPDVFQSTQLLYDLCKCNKIRKAIRV 548
TLPNWR+GKND +T+DLRLNDAFLYLEYM+GKGH PD Q+TQL+Y+LCK NK+RKA +V
Sbjct: 60 TLPNWRSGKNDPRTRDLRLNDAFLYLEYMIGKGHKPDGGQATQLMYELCKSNKMRKATKV 119
Query: 549 MEMMVSSGIIPDAASYTFLVNQLCKRGNVGYAIQLVDKLEEYGCPPNTVTYNSLVRGLCI 728
ME+M+ SG PD AS TFLVN LCKRGNVGYA+QLV+K+EEYG P NTVTYNSLVRGLC+
Sbjct: 120 MELMIGSGTTPDPASCTFLVNNLCKRGNVGYAMQLVEKMEEYGYPTNTVTYNSLVRGLCM 179
Query: 729 QGNLQQSLQLLDRFLQRGLVPNVFTYSFLLEAAYKERGADEAMRLLNEIIAKGGKPNLVS 908
GNL QSLQ+LD+F+++GLVPNVFTYSFLLEAAYKERGADEA+RLL+EI+AKGGKPNLVS
Sbjct: 180 HGNLSQSLQILDKFMKKGLVPNVFTYSFLLEAAYKERGADEAIRLLDEIVAKGGKPNLVS 239
Query: 909 YNVLLTGLCKEGRLEEAIGFFRSLPSKGFDPNVVSYNILLRSLCHEGRWEEANELLSEMV 1088
YNVLLTGLCKEGR EEA+ FFR LPSKGF PNVVSYNILLRSLC+EGRWE+A ELL+EM
Sbjct: 240 YNVLLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNILLRSLCYEGRWEKAKELLAEMD 299
Query: 1089 GDDRTPSIITYNILIGSLAHHGRTDHALEVLEEMAHGRFKPNAASYNPIIAQFCKEGKLD 1268
G +R+PSI+T+NILIGSLA HG+TD ALEVL++M+ RFK AASYNPIIA+ CKEGK+D
Sbjct: 300 GGERSPSIVTFNILIGSLALHGQTDQALEVLDDMSRARFKATAASYNPIIARLCKEGKVD 359
Query: 1269 LVVKCLDQMIYRHCNPNDGTYNALAVLCGKGSVEEAFSIIQTLGNRQKLSMHDFYKNVIT 1448
LVVKCLDQM+YR CNPN+GTYNA+AVLC +G V+EAFSIIQ+LGN+Q S HDFYK VI+
Sbjct: 360 LVVKCLDQMMYRRCNPNEGTYNAIAVLCEEGKVQEAFSIIQSLGNKQNSSTHDFYKGVIS 419
Query: 1449 SLCRKGNTFAAFQLLYEMTKNEFTPDSYTNSSLIRGLCMEGMLDEAMAIFEVMEENDYRP 1628
SLCRKGNT+ AFQLLYEMTK F PDSYT SSLIRGLC EGMLDEAM IF +MEEN RP
Sbjct: 420 SLCRKGNTYPAFQLLYEMTKYGFVPDSYTYSSLIRGLCSEGMLDEAMEIFSIMEENYCRP 479
Query: 1629 DIDNYNALLLGLCKAQRTDISLEVFETMIEKAFMPNEATYTIIVEGIAHEEDLELAADVL 1808
D+DN+NAL+LGLCK ++TD+SL VFE M++K +MPNE TYTIIVEGIAH+E++ELAA VL
Sbjct: 480 DVDNFNALILGLCKCRKTDLSLMVFEMMVKKGYMPNETTYTIIVEGIAHQEEMELAAAVL 539
Query: 1809 KELYVRQVVSRNTVERLVMQYDLE 1880
KELY+RQ V R+T+ERLVMQYDLE
Sbjct: 540 KELYLRQAVGRSTLERLVMQYDLE 563
>gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 566
Score = 843 bits (2179), Expect = 0.0
Identities = 408/564 (72%), Positives = 489/564 (86%)
Frame = +3
Query: 201 LLHTMSPLPNPSSTSTKKSCCFFSHIPNLHTPSLNKGFTKILASTHLSIPTKETVFTLPN 380
LL+T+SP+ N S +T++ C FFSHIPNL SLNKGF+K+LAST ++I K+T+FTLPN
Sbjct: 4 LLNTVSPITNTSPETTRRGCGFFSHIPNLQKLSLNKGFSKVLASTQITISPKDTIFTLPN 63
Query: 381 WRNGKNDNKTKDLRLNDAFLYLEYMVGKGHIPDVFQSTQLLYDLCKCNKIRKAIRVMEMM 560
W+ GK + K+K+LRL DAF +LE+MV KG PDVFQ+TQLLYDLCK K+RKAI+VMEMM
Sbjct: 64 WKTGKVEQKSKELRLTDAFFHLEFMVEKGQKPDVFQATQLLYDLCKACKMRKAIKVMEMM 123
Query: 561 VSSGIIPDAASYTFLVNQLCKRGNVGYAIQLVDKLEEYGCPPNTVTYNSLVRGLCIQGNL 740
+ SGIIPDA+SYTFLV+ LC++GNVGYA+QLVDK+EEYG P NTVTYNSLVRGLC+ GNL
Sbjct: 124 IGSGIIPDASSYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGNL 183
Query: 741 QQSLQLLDRFLQRGLVPNVFTYSFLLEAAYKERGADEAMRLLNEIIAKGGKPNLVSYNVL 920
QSLQLLDR +Q+GLVPN +TYSFLLEAAYKERGADEA +LL+EIIAKGG+PNLVSYNVL
Sbjct: 184 TQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVSYNVL 243
Query: 921 LTGLCKEGRLEEAIGFFRSLPSKGFDPNVVSYNILLRSLCHEGRWEEANELLSEMVGDDR 1100
LTGLCKEGR E+AI FR LPSKGF PNVVSYNILLRSLC+EGRWEEAN LL+EM GD+R
Sbjct: 244 LTGLCKEGRTEDAIRLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDER 303
Query: 1101 TPSIITYNILIGSLAHHGRTDHALEVLEEMAHGRFKPNAASYNPIIAQFCKEGKLDLVVK 1280
+PS +TYNILIGSLA HGRT+HALEVLEEM RFKP A+SYNPIIA CK+GKLDLVVK
Sbjct: 304 SPSTVTYNILIGSLALHGRTEHALEVLEEMIRARFKPTASSYNPIIAHLCKDGKLDLVVK 363
Query: 1281 CLDQMIYRHCNPNDGTYNALAVLCGKGSVEEAFSIIQTLGNRQKLSMHDFYKNVITSLCR 1460
CLDQM+YRHCNPN+GTYNA+A LC +G V+EAFSIIQ+LGN+Q S +FYK VITSLCR
Sbjct: 364 CLDQMMYRHCNPNEGTYNAIATLCEEGMVQEAFSIIQSLGNKQHSSTQEFYKIVITSLCR 423
Query: 1461 KGNTFAAFQLLYEMTKNEFTPDSYTNSSLIRGLCMEGMLDEAMAIFEVMEENDYRPDIDN 1640
KGNT+ AFQLLYEMTK FTPDS+T SSLIRGLCMEGML+EA+ IF VMEEN+ +PD +N
Sbjct: 424 KGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENN-KPDTEN 482
Query: 1641 YNALLLGLCKAQRTDISLEVFETMIEKAFMPNEATYTIIVEGIAHEEDLELAADVLKELY 1820
YN+L+LG CK++RTD++L+VFE M+ K ++PNE TYTI+VEGI HE++++LA VL+EL
Sbjct: 483 YNSLILGCCKSRRTDLALDVFEIMVGKGYLPNETTYTILVEGIIHEKEMDLATKVLRELQ 542
Query: 1821 VRQVVSRNTVERLVMQYDLE*IAL 1892
+R V+S++T+ERLVMQYDL + L
Sbjct: 543 LRDVISQSTLERLVMQYDLNELPL 566
>ref|XP_004144640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic-like [Cucumis sativus]
Length = 566
Score = 837 bits (2162), Expect = 0.0
Identities = 405/564 (71%), Positives = 487/564 (86%)
Frame = +3
Query: 201 LLHTMSPLPNPSSTSTKKSCCFFSHIPNLHTPSLNKGFTKILASTHLSIPTKETVFTLPN 380
LL+T+SP+ NPS +T++ C FFSHIPN+ SLNKGF+K+LAST ++I K+T+FTLPN
Sbjct: 4 LLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFTLPN 63
Query: 381 WRNGKNDNKTKDLRLNDAFLYLEYMVGKGHIPDVFQSTQLLYDLCKCNKIRKAIRVMEMM 560
W+ GK D K+K+LRLNDAF +LE+MV KG PDVFQ+TQLLYDLCK K+RKAI+VMEMM
Sbjct: 64 WKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMM 123
Query: 561 VSSGIIPDAASYTFLVNQLCKRGNVGYAIQLVDKLEEYGCPPNTVTYNSLVRGLCIQGNL 740
+ SGIIPDAASYTFLV+ LC++GNVGYA+QLVDK+EEYG P NT TYNSLVRGLC+ GNL
Sbjct: 124 IGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNL 183
Query: 741 QQSLQLLDRFLQRGLVPNVFTYSFLLEAAYKERGADEAMRLLNEIIAKGGKPNLVSYNVL 920
QSLQLLDR +Q+GLVPN +TYSFLLEAAYKERGADEA +LL+EIIAKGGKPNLVSYNVL
Sbjct: 184 TQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVL 243
Query: 921 LTGLCKEGRLEEAIGFFRSLPSKGFDPNVVSYNILLRSLCHEGRWEEANELLSEMVGDDR 1100
LTGLCKEGR E+A+ FR LPSKGF PNVVSYNILLRSLC+EGRWEEAN LL+EM GD+R
Sbjct: 244 LTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDER 303
Query: 1101 TPSIITYNILIGSLAHHGRTDHALEVLEEMAHGRFKPNAASYNPIIAQFCKEGKLDLVVK 1280
+PS +TYNILIGSL HGRT+HALEVLEEM RFKP A+SYNPIIA+ CK+ K+DLVVK
Sbjct: 304 SPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVVK 363
Query: 1281 CLDQMIYRHCNPNDGTYNALAVLCGKGSVEEAFSIIQTLGNRQKLSMHDFYKNVITSLCR 1460
CLDQM+YRHCNPN+GTYNA+A LC +G V+EAFSIIQ+LGN+Q S +FYK VITSLCR
Sbjct: 364 CLDQMMYRHCNPNEGTYNAIATLCEEGMVQEAFSIIQSLGNKQHFSTQEFYKIVITSLCR 423
Query: 1461 KGNTFAAFQLLYEMTKNEFTPDSYTNSSLIRGLCMEGMLDEAMAIFEVMEENDYRPDIDN 1640
KGNT+ AFQLLYEMTK FTPDS+T SSLIRGLCMEGML+EA+ IF VMEEN + D +N
Sbjct: 424 KGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEEN-IKLDTEN 482
Query: 1641 YNALLLGLCKAQRTDISLEVFETMIEKAFMPNEATYTIIVEGIAHEEDLELAADVLKELY 1820
YN+L+LG CK++RTD++L+VFE M+ K ++ NE TYTI+VEGI HE++++LA +VL+EL
Sbjct: 483 YNSLILGCCKSRRTDLALDVFEIMVGKGYLANETTYTILVEGIIHEKEMDLATEVLRELQ 542
Query: 1821 VRQVVSRNTVERLVMQYDLE*IAL 1892
+R V++++TVERLVMQYDL + L
Sbjct: 543 LRDVINQSTVERLVMQYDLNELPL 566
>ref|XP_004162287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic-like [Cucumis sativus]
Length = 566
Score = 837 bits (2161), Expect = 0.0
Identities = 404/564 (71%), Positives = 487/564 (86%)
Frame = +3
Query: 201 LLHTMSPLPNPSSTSTKKSCCFFSHIPNLHTPSLNKGFTKILASTHLSIPTKETVFTLPN 380
LL+T+SP+ NPS +T++ C FFSHIPN+ SLNKGF+K+LAST ++I K+T+FTLPN
Sbjct: 4 LLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFTLPN 63
Query: 381 WRNGKNDNKTKDLRLNDAFLYLEYMVGKGHIPDVFQSTQLLYDLCKCNKIRKAIRVMEMM 560
W+ GK D K+K+LRLNDAF +LE+MV KG PDVFQ+TQLLYDLCK K+RKAI+VMEMM
Sbjct: 64 WKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMM 123
Query: 561 VSSGIIPDAASYTFLVNQLCKRGNVGYAIQLVDKLEEYGCPPNTVTYNSLVRGLCIQGNL 740
+ SGIIPDAASYTFLV+ LC++GNVGYA+QLVDK+EEYG P NT TYNSLVRGLC+ GNL
Sbjct: 124 IGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNL 183
Query: 741 QQSLQLLDRFLQRGLVPNVFTYSFLLEAAYKERGADEAMRLLNEIIAKGGKPNLVSYNVL 920
QSLQLLDR +Q+GLVPN +TYSFLLEAAYKERGADEA +LL+EIIAKGGKPNLVSYNVL
Sbjct: 184 TQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVL 243
Query: 921 LTGLCKEGRLEEAIGFFRSLPSKGFDPNVVSYNILLRSLCHEGRWEEANELLSEMVGDDR 1100
LTGLCKEGR E+A+ FR LPSKGF PNVVSYNILLRSLC+EGRWEEAN LL+EM GD+R
Sbjct: 244 LTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDER 303
Query: 1101 TPSIITYNILIGSLAHHGRTDHALEVLEEMAHGRFKPNAASYNPIIAQFCKEGKLDLVVK 1280
+PS +TYNILIGSL HGRT+HALEVLEEM RFKP A+SYNPIIA+ CK+ K+DLVVK
Sbjct: 304 SPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVVK 363
Query: 1281 CLDQMIYRHCNPNDGTYNALAVLCGKGSVEEAFSIIQTLGNRQKLSMHDFYKNVITSLCR 1460
CLDQM+YRHCNPN+GTYNA+A LC +G V+EAFSIIQ+LGN+Q S +FYK VITSLCR
Sbjct: 364 CLDQMMYRHCNPNEGTYNAIATLCEEGMVQEAFSIIQSLGNKQHFSTQEFYKIVITSLCR 423
Query: 1461 KGNTFAAFQLLYEMTKNEFTPDSYTNSSLIRGLCMEGMLDEAMAIFEVMEENDYRPDIDN 1640
KGNT+ AFQLLYEMTK FTPDS+T SSLIRGLCMEGML+EA+ IF VMEEN + D +N
Sbjct: 424 KGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEEN-IKLDTEN 482
Query: 1641 YNALLLGLCKAQRTDISLEVFETMIEKAFMPNEATYTIIVEGIAHEEDLELAADVLKELY 1820
YN+L+LG CK++RTD++L+VFE M+ K ++ NE TYTI+VEGI HE++++LA +VL+EL
Sbjct: 483 YNSLILGCCKSRRTDLALDVFEIMVGKGYLANETTYTILVEGIIHEKEMDLATEVLRELQ 542
Query: 1821 VRQVVSRNTVERLVMQYDLE*IAL 1892
+R V++++TVERL+MQYDL + L
Sbjct: 543 LRDVINQSTVERLIMQYDLNELPL 566
>ref|XP_002513427.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223547335|gb|EEF48830.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 567
Score = 831 bits (2147), Expect = 0.0
Identities = 395/561 (70%), Positives = 489/561 (87%)
Frame = +3
Query: 198 ALLHTMSPLPNPSSTSTKKSCCFFSHIPNLHTPSLNKGFTKILASTHLSIPTKETVFTLP 377
+L+H++SPL NP + + + +C FFSHIPNLH+ SLNK FT++LAST ++I K++V TLP
Sbjct: 3 SLVHSVSPLTNPFTEAARIACGFFSHIPNLHSFSLNKDFTRVLASTQITISPKDSVITLP 62
Query: 378 NWRNGKNDNKTKDLRLNDAFLYLEYMVGKGHIPDVFQSTQLLYDLCKCNKIRKAIRVMEM 557
NWR+GKND + +D+R++DAF +LE++V GH PDV Q+TQLLYDLCK NK++KAIRVMEM
Sbjct: 63 NWRSGKNDQRNRDMRISDAFFHLEHIVKNGHKPDVVQATQLLYDLCKSNKMKKAIRVMEM 122
Query: 558 MVSSGIIPDAASYTFLVNQLCKRGNVGYAIQLVDKLEEYGCPPNTVTYNSLVRGLCIQGN 737
M+S GIIPDAASYTFLVN LCKRGNVGYA+QLV+K+E+ G P NTVTYN+LV+GLC+ GN
Sbjct: 123 MISCGIIPDAASYTFLVNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGN 182
Query: 738 LQQSLQLLDRFLQRGLVPNVFTYSFLLEAAYKERGADEAMRLLNEIIAKGGKPNLVSYNV 917
L +SLQ LDR +Q+GLVPN FTYS LLEAAYKERG +EAMRLL+EIIAKGG+PNLVSYNV
Sbjct: 183 LNKSLQFLDRLMQKGLVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNV 242
Query: 918 LLTGLCKEGRLEEAIGFFRSLPSKGFDPNVVSYNILLRSLCHEGRWEEANELLSEMVGDD 1097
LLTGLCKEGR+EEAI F++LPSKGF PNVVSYNILLRSLC+EGRWEEANELL+EM G +
Sbjct: 243 LLTGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANELLAEMNGRE 302
Query: 1098 RTPSIITYNILIGSLAHHGRTDHALEVLEEMAHGRFKPNAASYNPIIAQFCKEGKLDLVV 1277
R+PSI+TYNILIGSLA HG+ + AL+V++EM G FKP A SYNPIIA+ CKEGK++ VV
Sbjct: 303 RSPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLCKEGKVEAVV 362
Query: 1278 KCLDQMIYRHCNPNDGTYNALAVLCGKGSVEEAFSIIQTLGNRQKLSMHDFYKNVITSLC 1457
CLDQMI+ C+PN+GT+NA+AVLC +G V+EAFS+IQ+LGN+Q S+HD+YK V++ LC
Sbjct: 363 NCLDQMIFGRCSPNEGTFNAIAVLCYEGKVQEAFSLIQSLGNKQNSSIHDYYKGVVSCLC 422
Query: 1458 RKGNTFAAFQLLYEMTKNEFTPDSYTNSSLIRGLCMEGMLDEAMAIFEVMEENDYRPDID 1637
+KGNT+ AF LLYEMTK FTPDSYT SSLIRGLC+EGML EAM IF+++EE+ YRPDID
Sbjct: 423 KKGNTYPAFLLLYEMTKYGFTPDSYTYSSLIRGLCIEGMLYEAMEIFKLLEEDHYRPDID 482
Query: 1638 NYNALLLGLCKAQRTDISLEVFETMIEKAFMPNEATYTIIVEGIAHEEDLELAADVLKEL 1817
N+NAL+LG CK+ RTD+SLEVFE MIEK + P+E TYTI+VEGI HEE+ ELAA+VL+EL
Sbjct: 483 NFNALILGFCKSHRTDLSLEVFEMMIEKGYTPSETTYTILVEGIIHEEEKELAAEVLREL 542
Query: 1818 YVRQVVSRNTVERLVMQYDLE 1880
++RQV+S++TVERL+MQYDLE
Sbjct: 543 HLRQVMSQSTVERLIMQYDLE 563