BLASTX nr result

ID: Coptis24_contig00008324 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008324
         (767 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002315054.1| predicted protein [Populus trichocarpa] gi|2...   213   4e-53
gb|AFK41019.1| unknown [Lotus japonicus]                              207   2e-51
emb|CBI27449.3| unnamed protein product [Vitis vinifera]              205   8e-51
ref|XP_002271912.1| PREDICTED: uncharacterized protein LOC100247...   204   1e-50
ref|XP_002514376.1| conserved hypothetical protein [Ricinus comm...   201   2e-49

>ref|XP_002315054.1| predicted protein [Populus trichocarpa] gi|222864094|gb|EEF01225.1|
           predicted protein [Populus trichocarpa]
          Length = 233

 Score =  213 bits (542), Expect = 4e-53
 Identities = 110/157 (70%), Positives = 124/157 (78%), Gaps = 1/157 (0%)
 Frame = -2

Query: 469 LAVGDNYCGRTRHSRPVYSSTLXXXXXXXXXXXXDKHEGESSKEETGAVNNGF-RDDLER 293
           LA    Y   TR  RPV+SST+               + +SSK ETG +++   R++LER
Sbjct: 56  LASSSCYRPSTRKYRPVFSSTVDDPRDQDDPEEDGARDKDSSKGETGGIDSELLRENLER 115

Query: 292 IVGTDDSTFSGVDLATLIRNKYGRSYDVQLIKKEFMGKNLLALNVMWKYMEQRSFPLTEE 113
           IVG+DDS FSG+DLATLIRNKYGRSYDVQLIKKEFMG+NLLALNVMWKY EQRSFPLTEE
Sbjct: 116 IVGSDDSAFSGIDLATLIRNKYGRSYDVQLIKKEFMGRNLLALNVMWKYREQRSFPLTEE 175

Query: 112 EYILRLDDVANTLKCWGAVSHIRSSLSKSKERPRMGK 2
           EYILRLDDVANTLKCWGAVSHIR+SL KSKERPR+GK
Sbjct: 176 EYILRLDDVANTLKCWGAVSHIRNSLEKSKERPRIGK 212


>gb|AFK41019.1| unknown [Lotus japonicus]
          Length = 222

 Score =  207 bits (528), Expect = 2e-51
 Identities = 115/202 (56%), Positives = 140/202 (69%), Gaps = 2/202 (0%)
 Frame = -2

Query: 601 SVLSSKLQSWSLRVQDDAVKGRTHKALYHLYF--HSSGSCLNQGSHLAVGDNYCGRTRHS 428
           +++S+    W LRV D+  +G  HKA +  Y   +S+   L+  +   +        R  
Sbjct: 2   NIMSTHQCGWPLRVPDNPDRGNIHKAPFPGYTGTYSTSRGLDSRNVGYLAGKCHHNARKC 61

Query: 427 RPVYSSTLXXXXXXXXXXXXDKHEGESSKEETGAVNNGFRDDLERIVGTDDSTFSGVDLA 248
           RPV+SS +            DK+  ++   E    +   R+ LE+IVGTDDS FSG DLA
Sbjct: 62  RPVFSSLVSDSLDPYDSDDKDKNIPQNG--EIDEHSKKLRESLEKIVGTDDSAFSGFDLA 119

Query: 247 TLIRNKYGRSYDVQLIKKEFMGKNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKC 68
           TLIRNKYGRSYDVQLIKKEFMG+NLLALNVMWKYMEQRSFPL+EEEYILRLDDVANTLKC
Sbjct: 120 TLIRNKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLSEEEYILRLDDVANTLKC 179

Query: 67  WGAVSHIRSSLSKSKERPRMGK 2
           WGAVSHIR+SL+KSKERPR+GK
Sbjct: 180 WGAVSHIRNSLAKSKERPRIGK 201


>emb|CBI27449.3| unnamed protein product [Vitis vinifera]
          Length = 265

 Score =  205 bits (522), Expect = 8e-51
 Identities = 114/206 (55%), Positives = 139/206 (67%), Gaps = 3/206 (1%)
 Frame = -2

Query: 610 EMTSVLSSKLQSWSLRVQDDAVKGRTHKALYH---LYFHSSGSCLNQGSHLAVGDNYCGR 440
           +MT +  +    W L +Q+   +GR ++ +      Y  S GS    G  LA   +   R
Sbjct: 42  DMTMLSGNHCNLW-LGIQNHPSRGRFNQIICPGSGPYIPSRGSFFYHGQCLAGSSHQSAR 100

Query: 439 TRHSRPVYSSTLXXXXXXXXXXXXDKHEGESSKEETGAVNNGFRDDLERIVGTDDSTFSG 260
               RP++SST+               +  S+ E  G  +   R++LERIVG+DDSTFSG
Sbjct: 101 --RCRPIFSSTVDDGMDPDDSEDGIDKKQPSNGELGGVNSEMIRENLERIVGSDDSTFSG 158

Query: 259 VDLATLIRNKYGRSYDVQLIKKEFMGKNLLALNVMWKYMEQRSFPLTEEEYILRLDDVAN 80
           +DLATLIRNKYGRSYDV LIKKEFMG+NLLALNVMWKYMEQRSFPLTEEEY+LRLDDVAN
Sbjct: 159 LDLATLIRNKYGRSYDVLLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYLLRLDDVAN 218

Query: 79  TLKCWGAVSHIRSSLSKSKERPRMGK 2
           TLKCWGA+SHIR+SL K KERPR+GK
Sbjct: 219 TLKCWGAISHIRNSLEKLKERPRIGK 244


>ref|XP_002271912.1| PREDICTED: uncharacterized protein LOC100247903 [Vitis vinifera]
          Length = 223

 Score =  204 bits (520), Expect = 1e-50
 Identities = 114/205 (55%), Positives = 138/205 (67%), Gaps = 3/205 (1%)
 Frame = -2

Query: 607 MTSVLSSKLQSWSLRVQDDAVKGRTHKALYH---LYFHSSGSCLNQGSHLAVGDNYCGRT 437
           MT +  +    W L +Q+   +GR ++ +      Y  S GS    G  LA   +   R 
Sbjct: 1   MTMLSGNHCNLW-LGIQNHPSRGRFNQIICPGSGPYIPSRGSFFYHGQCLAGSSHQSAR- 58

Query: 436 RHSRPVYSSTLXXXXXXXXXXXXDKHEGESSKEETGAVNNGFRDDLERIVGTDDSTFSGV 257
              RP++SST+               +  S+ E  G  +   R++LERIVG+DDSTFSG+
Sbjct: 59  -RCRPIFSSTVDDGMDPDDSEDGIDKKQPSNGELGGVNSEMIRENLERIVGSDDSTFSGL 117

Query: 256 DLATLIRNKYGRSYDVQLIKKEFMGKNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANT 77
           DLATLIRNKYGRSYDV LIKKEFMG+NLLALNVMWKYMEQRSFPLTEEEY+LRLDDVANT
Sbjct: 118 DLATLIRNKYGRSYDVLLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYLLRLDDVANT 177

Query: 76  LKCWGAVSHIRSSLSKSKERPRMGK 2
           LKCWGA+SHIR+SL K KERPR+GK
Sbjct: 178 LKCWGAISHIRNSLEKLKERPRIGK 202


>ref|XP_002514376.1| conserved hypothetical protein [Ricinus communis]
           gi|223546473|gb|EEF47972.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 243

 Score =  201 bits (510), Expect = 2e-49
 Identities = 98/118 (83%), Positives = 111/118 (94%), Gaps = 1/118 (0%)
 Frame = -2

Query: 352 ESSKEETGAVNNGF-RDDLERIVGTDDSTFSGVDLATLIRNKYGRSYDVQLIKKEFMGKN 176
           ++SK++ G V++   R +LERIVGTDDS FSG+DLATLIRNKYGRSYDVQLIKKEFMG+N
Sbjct: 78  DTSKDDVGGVDSEILRRNLERIVGTDDSAFSGIDLATLIRNKYGRSYDVQLIKKEFMGRN 137

Query: 175 LLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIRSSLSKSKERPRMGK 2
           LLALNVMW+YMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIR+SL+KSKERPR+GK
Sbjct: 138 LLALNVMWRYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIRNSLAKSKERPRIGK 195


Top