BLASTX nr result
ID: Coptis24_contig00008321
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00008321
(654 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002521836.1| RNA-binding protein Nova-1, putative [Ricinu... 92 1e-36
ref|XP_004159922.1| PREDICTED: uncharacterized LOC101221280 [Cuc... 91 7e-36
ref|XP_004137120.1| PREDICTED: uncharacterized protein LOC101221... 91 7e-36
ref|NP_180167.1| upstream element-binding protein [Arabidopsis t... 90 1e-33
ref|XP_002880729.1| hypothetical protein ARALYDRAFT_481452 [Arab... 88 2e-33
>ref|XP_002521836.1| RNA-binding protein Nova-1, putative [Ricinus communis]
gi|223538874|gb|EEF40472.1| RNA-binding protein Nova-1,
putative [Ricinus communis]
Length = 544
Score = 92.0 bits (227), Expect(2) = 1e-36
Identities = 51/94 (54%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Frame = -2
Query: 500 KRKLDTFELAKQKAQEIAARIYNSAESKRSRF-DDSTDDLPPFTTEPTPQMTQVVSTPYP 324
KRKLD FELAKQ+AQEIA+RI N A+ KR R DS+ D P + P +
Sbjct: 16 KRKLDVFELAKQRAQEIASRIANDADLKRPRLVSDSSPDPPSLYSNSIPAPPSYTVSYAS 75
Query: 323 LQQQSYGFQGSSKKIDIPNAKVGVIIGKGGETIK 222
Q Q +G QG+SK+I IP+ KVGV+IGKGGETIK
Sbjct: 76 QQSQYHGSQGTSKRITIPSGKVGVVIGKGGETIK 109
Score = 87.0 bits (214), Expect(2) = 1e-36
Identities = 41/55 (74%), Positives = 50/55 (90%)
Frame = -1
Query: 165 GGETIKYLQLQSGARIHITKDSDADPYSQTRDVEITGTAEQITRAEQLVNDVISE 1
GGETIK +QLQSGA+I ITKD DADP+S TRDVE+ GT+EQI+RAE+L+NDVI+E
Sbjct: 104 GGETIKNIQLQSGAKIQITKDQDADPHSLTRDVELMGTSEQISRAEELINDVIAE 158
Score = 47.0 bits (110), Expect(2) = 1e-08
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Frame = -1
Query: 165 GGETIKYLQLQSGARIHI--TKDSDADPYSQTRDVEITGTAEQITRAEQLVNDVIS 4
GGETIKY+Q +SGAR+ I DP ++ R V I G EQI A++LVNDV++
Sbjct: 198 GGETIKYMQSRSGARMQIIPLHLPPGDPTTE-RTVYINGLTEQIEAAKELVNDVLN 252
Score = 38.1 bits (87), Expect(2) = 1e-08
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = -2
Query: 281 IDIPNAKVGVIIGKGGETIKY 219
I +PN KVG++IGKGGETIKY
Sbjct: 184 IRVPNDKVGLLIGKGGETIKY 204
>ref|XP_004159922.1| PREDICTED: uncharacterized LOC101221280 [Cucumis sativus]
Length = 516
Score = 90.9 bits (224), Expect(2) = 7e-36
Identities = 55/108 (50%), Positives = 70/108 (64%), Gaps = 7/108 (6%)
Frame = -2
Query: 521 QYQQETNKRKLD-TFELAKQKAQEIAARIYNSAESKRSRFD-DSTDDLPPFTTEPTPQMT 348
+ +TNKRKL+ +LAKQKAQEI A++ ++AESKR RF+ + PP P T
Sbjct: 9 ELHSDTNKRKLEENIQLAKQKAQEIVAKLVSNAESKRPRFEYEPPAPAPPPQNPPLSSST 68
Query: 347 QVVST-----PYPLQQQSYGFQGSSKKIDIPNAKVGVIIGKGGETIKY 219
VS+ PY +GFQ +SKKI+IPN KVG+IIGKGGETIKY
Sbjct: 69 FTVSSGTQAGPY------HGFQTTSKKINIPNIKVGLIIGKGGETIKY 110
Score = 85.9 bits (211), Expect(2) = 7e-36
Identities = 40/55 (72%), Positives = 50/55 (90%)
Frame = -1
Query: 165 GGETIKYLQLQSGARIHITKDSDADPYSQTRDVEITGTAEQITRAEQLVNDVISE 1
GGETIKYLQLQSGA+I IT+D +ADP S TRDVE+ GT+EQ++RAEQL+N+VI+E
Sbjct: 104 GGETIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLINEVIAE 158
>ref|XP_004137120.1| PREDICTED: uncharacterized protein LOC101221280 [Cucumis sativus]
Length = 516
Score = 90.9 bits (224), Expect(2) = 7e-36
Identities = 55/108 (50%), Positives = 70/108 (64%), Gaps = 7/108 (6%)
Frame = -2
Query: 521 QYQQETNKRKLD-TFELAKQKAQEIAARIYNSAESKRSRFD-DSTDDLPPFTTEPTPQMT 348
+ +TNKRKL+ +LAKQKAQEI A++ ++AESKR RF+ + PP P T
Sbjct: 9 ELHSDTNKRKLEENIQLAKQKAQEIVAKLVSNAESKRPRFEYEPPAPAPPPQNPPLSSST 68
Query: 347 QVVST-----PYPLQQQSYGFQGSSKKIDIPNAKVGVIIGKGGETIKY 219
VS+ PY +GFQ +SKKI+IPN KVG+IIGKGGETIKY
Sbjct: 69 FTVSSGTQAGPY------HGFQTTSKKINIPNIKVGLIIGKGGETIKY 110
Score = 85.9 bits (211), Expect(2) = 7e-36
Identities = 40/55 (72%), Positives = 50/55 (90%)
Frame = -1
Query: 165 GGETIKYLQLQSGARIHITKDSDADPYSQTRDVEITGTAEQITRAEQLVNDVISE 1
GGETIKYLQLQSGA+I IT+D +ADP S TRDVE+ GT+EQ++RAEQL+N+VI+E
Sbjct: 104 GGETIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLINEVIAE 158
>ref|NP_180167.1| upstream element-binding protein [Arabidopsis thaliana]
gi|19310435|gb|AAL84954.1| F17H15.1/F17H15.1
[Arabidopsis thaliana] gi|20197266|gb|AAM15002.1|
unknown protein [Arabidopsis thaliana]
gi|20197368|gb|AAM15045.1| unknown protein [Arabidopsis
thaliana] gi|110741998|dbj|BAE98938.1| hypothetical
protein [Arabidopsis thaliana]
gi|330252684|gb|AEC07778.1| upstream element-binding
protein [Arabidopsis thaliana]
Length = 632
Score = 90.1 bits (222), Expect(2) = 1e-33
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 7/98 (7%)
Frame = -2
Query: 491 LDTFELAKQKAQEIAARIYNSAESKRSRFDDSTD----DLPPFTTEPTP--QMTQVVSTP 330
+D ++AKQKAQEIAAR+ NSA++KR R D+ D F++ P+ QM+ V +
Sbjct: 64 MDEIQIAKQKAQEIAARLLNSADAKRPRVDNGASYDYGDNKGFSSYPSEGKQMSGTVPSS 123
Query: 329 YPLQQQSYG-FQGSSKKIDIPNAKVGVIIGKGGETIKY 219
P+ SYG FQG++KKIDIPN +VGVIIGKGGETIKY
Sbjct: 124 IPV---SYGSFQGTTKKIDIPNMRVGVIIGKGGETIKY 158
Score = 79.3 bits (194), Expect(2) = 1e-33
Identities = 36/55 (65%), Positives = 46/55 (83%)
Frame = -1
Query: 165 GGETIKYLQLQSGARIHITKDSDADPYSQTRDVEITGTAEQITRAEQLVNDVISE 1
GGETIKYLQLQSGA+I +T+D DADP TR V++TGT +QI++AEQL+ DV+ E
Sbjct: 152 GGETIKYLQLQSGAKIQVTRDMDADPNCATRTVDLTGTPDQISKAEQLITDVLQE 206
Score = 44.3 bits (103), Expect(2) = 3e-07
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Frame = -1
Query: 165 GGETIKYLQLQSGARIHITKDS--DADPYSQTRDVEITGTAEQITRAEQLVNDVIS 4
GGETIK +Q ++GARI + DP + R ++I G EQI A+QLVN++IS
Sbjct: 248 GGETIKSMQAKTGARIQVIPLHLPPGDPTPE-RTLQIDGITEQIEHAKQLVNEIIS 302
Score = 35.8 bits (81), Expect(2) = 3e-07
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2
Query: 275 IPNAKVGVIIGKGGETIK 222
IPN KVG+IIGKGGETIK
Sbjct: 236 IPNNKVGLIIGKGGETIK 253
>ref|XP_002880729.1| hypothetical protein ARALYDRAFT_481452 [Arabidopsis lyrata subsp.
lyrata] gi|297326568|gb|EFH56988.1| hypothetical protein
ARALYDRAFT_481452 [Arabidopsis lyrata subsp. lyrata]
Length = 634
Score = 88.2 bits (217), Expect(2) = 2e-33
Identities = 51/96 (53%), Positives = 67/96 (69%), Gaps = 5/96 (5%)
Frame = -2
Query: 491 LDTFELAKQKAQEIAARIYNSAESKRSRFDDSTD----DLPPFTTEPTPQMTQVVSTPYP 324
+D ++AKQKAQEIAAR+ NSA++KR R ++ D F++ P+ + Q+ TP
Sbjct: 64 MDEIQIAKQKAQEIAARLLNSADAKRPRVENGASYDYGDNKGFSSYPS-EGKQMSGTPPS 122
Query: 323 LQQQSYG-FQGSSKKIDIPNAKVGVIIGKGGETIKY 219
SYG FQG++KKIDIPN +VGVIIGKGGETIKY
Sbjct: 123 SIPVSYGSFQGTTKKIDIPNMRVGVIIGKGGETIKY 158
Score = 80.1 bits (196), Expect(2) = 2e-33
Identities = 36/55 (65%), Positives = 47/55 (85%)
Frame = -1
Query: 165 GGETIKYLQLQSGARIHITKDSDADPYSQTRDVEITGTAEQITRAEQLVNDVISE 1
GGETIKYLQLQSGA+I +T+D DADP + TR V++TGT +QI++AEQL+ DV+ E
Sbjct: 152 GGETIKYLQLQSGAKIQVTRDMDADPNATTRTVDLTGTPDQISKAEQLITDVLQE 206
Score = 44.3 bits (103), Expect(2) = 3e-07
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Frame = -1
Query: 165 GGETIKYLQLQSGARIHITKDS--DADPYSQTRDVEITGTAEQITRAEQLVNDVIS 4
GGETIK +Q ++GARI + DP + R ++I G EQI A+QLVN++IS
Sbjct: 247 GGETIKSMQAKTGARIQVIPLHLPPGDPTPE-RTLQIDGITEQIEHAKQLVNEIIS 301
Score = 35.8 bits (81), Expect(2) = 3e-07
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2
Query: 275 IPNAKVGVIIGKGGETIK 222
IPN KVG+IIGKGGETIK
Sbjct: 235 IPNNKVGLIIGKGGETIK 252