BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008290
         (2876 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    55   2e-07
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]              58   2e-06
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]              58   2e-06
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]              57   2e-06

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 55.1 bits (131), Expect(2) = 2e-07
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
 Frame = +3

Query: 2472 GITRIGAIYRNRSGYFMLVLWRKLGVNTNYLAECLAILESMECAMQRGWSKLWIEADSEV 2651
            G+   G ++R+ SG F+      +G+ + + AE LA + ++E A   GW  LW+E+DS  
Sbjct: 1034 GLAACGGLFRDSSGSFLGAFSCNIGLASVFHAETLAFILALEHAAHHGWRNLWLESDSTS 1093

Query: 2652 AISSFGTRN-VPWCMKNIWDICQ 2717
            A+  F   + V W ++N W   Q
Sbjct: 1094 ALMIFSNSSLVQWLLRNRWHNAQ 1116



 Score = 29.3 bits (64), Expect(2) = 2e-07
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 2365 VQPRWITHQTVKQCTWELPEPDTIKINCDGASMGNRA 2475
            V PR   ++ +    W+ P P  +K+N DG+ +G  A
Sbjct: 1000 VSPRHRKYKDIILVLWKNPSPPLLKVNTDGSVVGGLA 1036


>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
          Length = 1898

 Score = 57.8 bits (138), Expect(2) = 2e-06
 Identities = 57/238 (23%), Positives = 89/238 (37%), Gaps = 11/238 (4%)
 Frame = +3

Query: 1977 KRGIHLASRYYCCQQKSEDLKHIIWHCDSARKCWTWVADKFKFSANFYSSTEAKSKSVSN 2156
            +RG+  A+    C ++ E L H+   C  A  CW        F  + +    +  K+  +
Sbjct: 1601 RRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTFQTSNHLHMHSWMKAACS 1660

Query: 2157 SPIMKHL---WDAAILSCLTILWNHRNRLVFDNK----S*SIQFCHKEISN----IIQQT 2303
            S         W       L  LW  RNRLVFDN     S  +     E S     + ++T
Sbjct: 1661 SQQKDGYGTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILNRSFMESSEARCLLAKRT 1720

Query: 2304 GVL*KAQMWSATDIEVLNNWSPTAMDYSSNSETMYLGVA*TRYNQN*L*WCING*PGITR 2483
            G+    Q W          WSP A  +             T+ N +           +  
Sbjct: 1721 GLQTAFQTWVV--------WSPPAAGF-------------TKLNSD---GACKSHSHLAS 1756

Query: 2484 IGAIYRNRSGYFMLVLWRKLGVNTNYLAECLAILESMECAMQRGWSKLWIEADSEVAI 2657
             G + RN +G ++      +G   ++LAE   + E +  A  RG++KL  E DSE  +
Sbjct: 1757 AGGLLRNENGLWVAGYTCNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVV 1814



 Score = 23.1 bits (48), Expect(2) = 2e-06
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 2740 KITPTWREANFSADKAANHAISMTYTSTIL 2829
            K+T   RE N  AD  AN   S ++ +TIL
Sbjct: 1845 KVTHILREGNQCADFLANLGQSSSWGTTIL 1874


>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score = 57.8 bits (138), Expect(2) = 2e-06
 Identities = 57/238 (23%), Positives = 89/238 (37%), Gaps = 11/238 (4%)
 Frame = +3

Query: 1977 KRGIHLASRYYCCQQKSEDLKHIIWHCDSARKCWTWVADKFKFSANFYSSTEAKSKSVSN 2156
            +RG+  A+    C ++ E L H+   C  A  CW        F  + +    +  K+  +
Sbjct: 1069 RRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTFQTSNHLHMHSWMKAACS 1128

Query: 2157 SPIMKHL---WDAAILSCLTILWNHRNRLVFDNK----S*SIQFCHKEISN----IIQQT 2303
            S         W       L  LW  RNRLVFDN     S  +     E S     + ++T
Sbjct: 1129 SQQKDGYSTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILNRSFMESSEARCLLAKRT 1188

Query: 2304 GVL*KAQMWSATDIEVLNNWSPTAMDYSSNSETMYLGVA*TRYNQN*L*WCING*PGITR 2483
            G+    Q W          WSP A  +             T+ N +           +  
Sbjct: 1189 GLQTAFQTWVV--------WSPPAAGF-------------TKLNSD---GACKSHSHLAS 1224

Query: 2484 IGAIYRNRSGYFMLVLWRKLGVNTNYLAECLAILESMECAMQRGWSKLWIEADSEVAI 2657
             G + RN +G ++      +G   ++LAE   + E +  A  RG++KL  E DSE  +
Sbjct: 1225 AGGLLRNENGLWVAGYTCNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVV 1282



 Score = 23.1 bits (48), Expect(2) = 2e-06
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 2740 KITPTWREANFSADKAANHAISMTYTSTIL 2829
            K+T   RE N  AD  AN   S ++ +TIL
Sbjct: 1313 KVTHILREGNQCADFLANLGQSSSWGTTIL 1342


>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score = 57.4 bits (137), Expect(2) = 2e-06
 Identities = 57/238 (23%), Positives = 89/238 (37%), Gaps = 11/238 (4%)
 Frame = +3

Query: 1977 KRGIHLASRYYCCQQKSEDLKHIIWHCDSARKCWTWVADKFKFSANFYSSTEAKSKSVSN 2156
            +RG+  A+    C ++ E L H+   C  A  CW        F  + +    +  K+  +
Sbjct: 1069 RRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTFQTSNHLHMHSWMKAACS 1128

Query: 2157 SPIMKHL---WDAAILSCLTILWNHRNRLVFDNK----S*SIQFCHKEISN----IIQQT 2303
            S         W       L  LW  RNRLVFDN     S  +     E S     + ++T
Sbjct: 1129 SQQKDGYGTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILNRSFMESSEARCLLAKRT 1188

Query: 2304 GVL*KAQMWSATDIEVLNNWSPTAMDYSSNSETMYLGVA*TRYNQN*L*WCING*PGITR 2483
            G+    Q W          WSP A  +             T+ N +           +  
Sbjct: 1189 GLQTAFQTWVV--------WSPPAAGF-------------TKLNSD---GACKSHSHLAS 1224

Query: 2484 IGAIYRNRSGYFMLVLWRKLGVNTNYLAECLAILESMECAMQRGWSKLWIEADSEVAI 2657
             G + RN +G ++      +G   ++LAE   + E +  A  RG++KL  E DSE  +
Sbjct: 1225 AGGLLRNENGLWVAGYICNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVV 1282



 Score = 23.1 bits (48), Expect(2) = 2e-06
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 2740 KITPTWREANFSADKAANHAISMTYTSTIL 2829
            K+T   RE N  AD  AN   S ++ +TIL
Sbjct: 1313 KVTHILREGNQCADFLANLGQSSSWGTTIL 1342