BLASTX nr result
ID: Coptis24_contig00008232
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00008232 (670 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003560376.1| PREDICTED: uncharacterized protein LOC100846... 54 5e-08 ref|XP_002324377.1| predicted protein [Populus trichocarpa] gi|2... 59 7e-08 >ref|XP_003560376.1| PREDICTED: uncharacterized protein LOC100846465 [Brachypodium distachyon] Length = 1046 Score = 54.3 bits (129), Expect(2) = 5e-08 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 2/50 (4%) Frame = -2 Query: 534 IKKVLFPYEEFVKLFN*NDVRFLPCGLLNCGNRSVQG--YECMTTYTPVI 391 + KV+FPY+EF+KL+N D FLPCGL+NCGN +C++ P++ Sbjct: 179 LNKVIFPYDEFLKLYNWRDHDFLPCGLVNCGNSCFANVVLQCLSCTRPLV 228 Score = 28.5 bits (62), Expect(2) = 5e-08 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 7/41 (17%) Frame = -1 Query: 667 EHWRSSHIQKCQELR-------KCGGLSAKSDVSSIGGKAS 566 +HW+S H KC++++ CGG A S SS+ G+ S Sbjct: 132 KHWQSDHKFKCKQMKLDSVDKLPCGG-EASSKKSSVFGRIS 171 >ref|XP_002324377.1| predicted protein [Populus trichocarpa] gi|222865811|gb|EEF02942.1| predicted protein [Populus trichocarpa] Length = 489 Score = 58.5 bits (140), Expect(2) = 7e-08 Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 2/60 (3%) Frame = -2 Query: 564 GGKSTKEFPLIKKVLFPYEEFVKLFN*NDVRFLPCGLLNCGNRSVQG--YECMTTYTPVI 391 GG ++K KVLFPY+EF+KL+N + RF PCGLLNCGN +C+T P++ Sbjct: 147 GGSNSKPTKKPGKVLFPYDEFIKLYNSDKPRFPPCGLLNCGNSCFANVVLQCLTYTRPLV 206 Score = 23.9 bits (50), Expect(2) = 7e-08 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Frame = -1 Query: 664 HWRSSHIQKCQELRKCGGLSAKSDVS---SIGGKASW 563 HW++ H +C++ + +AKS+ S GG S+ Sbjct: 101 HWKAGHKLQCKDFKANSSQTAKSNFGFKPSGGGSKSF 137