BLASTX nr result
ID: Coptis24_contig00008230
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00008230 (305 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002285922.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1... 121 5e-26 ref|XP_003540566.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1... 116 2e-24 gb|AFK49070.1| unknown [Lotus japonicus] 113 1e-23 ref|XP_002306968.1| predicted protein [Populus trichocarpa] gi|2... 113 1e-23 gb|ABK96425.1| unknown [Populus trichocarpa x Populus deltoides] 112 4e-23 >ref|XP_002285922.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2-like [Vitis vinifera] Length = 69 Score = 121 bits (304), Expect = 5e-26 Identities = 47/55 (85%), Positives = 52/55 (94%) Frame = +1 Query: 25 GGGDGHSTSYKGFTMHHPKRWHVVTGKGMCAIMWFWVLYRAKKDGPVVLGWRHPW 189 GGG GHST+YKG TMHHPKRWH +TGKG+CAIMWFWV+YRAK+DGPVVLGWRHPW Sbjct: 3 GGGHGHSTTYKGVTMHHPKRWHTITGKGLCAIMWFWVMYRAKQDGPVVLGWRHPW 57 >ref|XP_003540566.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Glycine max] Length = 67 Score = 116 bits (291), Expect = 2e-24 Identities = 44/56 (78%), Positives = 50/56 (89%) Frame = +1 Query: 22 MGGGDGHSTSYKGFTMHHPKRWHVVTGKGMCAIMWFWVLYRAKKDGPVVLGWRHPW 189 MGGG GH T+YKG T+H PKRWH +TGKG+CA+MWFWV YRAK+DGPVVLGWRHPW Sbjct: 1 MGGGQGHGTTYKGVTIHQPKRWHTITGKGLCAVMWFWVFYRAKQDGPVVLGWRHPW 56 >gb|AFK49070.1| unknown [Lotus japonicus] Length = 66 Score = 113 bits (283), Expect = 1e-23 Identities = 45/56 (80%), Positives = 50/56 (89%) Frame = +1 Query: 22 MGGGDGHSTSYKGFTMHHPKRWHVVTGKGMCAIMWFWVLYRAKKDGPVVLGWRHPW 189 MGGG G T+YKG T+H PKRWH VTGKG+CA+MWFWVLYRAK+DGPVVLGWRHPW Sbjct: 1 MGGGHGGGTTYKGVTVHTPKRWHAVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPW 56 >ref|XP_002306968.1| predicted protein [Populus trichocarpa] gi|222856417|gb|EEE93964.1| predicted protein [Populus trichocarpa] Length = 68 Score = 113 bits (283), Expect = 1e-23 Identities = 45/56 (80%), Positives = 49/56 (87%) Frame = +1 Query: 22 MGGGDGHSTSYKGFTMHHPKRWHVVTGKGMCAIMWFWVLYRAKKDGPVVLGWRHPW 189 M GG G +YKG TMH PKRWHVVTGKG+CA+MWFWVLYRAK+DGPVVLGWRHPW Sbjct: 1 MAGGHGEGINYKGLTMHKPKRWHVVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPW 56 >gb|ABK96425.1| unknown [Populus trichocarpa x Populus deltoides] Length = 68 Score = 112 bits (279), Expect = 4e-23 Identities = 44/56 (78%), Positives = 48/56 (85%) Frame = +1 Query: 22 MGGGDGHSTSYKGFTMHHPKRWHVVTGKGMCAIMWFWVLYRAKKDGPVVLGWRHPW 189 M GG G +YKG TMH PKRWH VTGKG+CA+MWFWVLYRAK+DGPVVLGWRHPW Sbjct: 1 MAGGHGEGIAYKGLTMHKPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPW 56